Wall clock time and date at job start Tue Mar 31 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.68110 * 2 1 4 4 C 1.53366 * 113.39372 * 229.42214 * 2 1 3 5 5 C 1.53368 * 81.26289 * 218.61827 * 4 2 1 6 6 H 1.09006 * 113.43237 * 271.58180 * 5 4 2 7 7 C 1.52998 * 113.39247 * 141.38772 * 5 4 2 8 8 N 1.46500 * 109.47095 * 181.58362 * 7 5 4 9 9 C 1.34769 * 120.00234 * 179.97438 * 8 7 5 10 10 O 1.21546 * 120.00006 * 359.72440 * 9 8 7 11 11 C 1.47884 * 120.00388 * 179.71833 * 9 8 7 12 12 C 1.39924 * 120.02329 * 359.73344 * 11 9 8 13 13 C 1.38329 * 120.35824 * 179.71550 * 12 11 9 14 14 C 1.37760 * 120.41198 * 0.55318 * 13 12 11 15 15 C 1.40746 * 120.03663 * 359.72135 * 14 13 12 16 16 C 1.41437 * 120.17637 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00279 * 334.92566 * 16 15 14 18 18 C 1.39942 * 119.99928 * 154.93042 * 16 15 14 19 19 N 1.30820 * 120.00202 * 342.58418 * 18 16 15 20 20 Si 1.86800 * 119.99608 * 162.58261 * 18 16 15 21 21 H 1.48503 * 109.47241 * 90.00163 * 20 18 16 22 22 H 1.48502 * 109.47145 * 209.99600 * 20 18 16 23 23 H 1.48496 * 109.47550 * 330.00399 * 20 18 16 24 24 C 1.38994 * 120.02867 * 179.97438 * 11 9 8 25 25 O 1.43350 * 88.44638 * 26.48588 * 5 4 2 26 26 H 1.08998 * 109.47635 * 308.99082 * 1 2 3 27 27 H 1.08996 * 109.47115 * 68.99633 * 1 2 3 28 28 H 1.09010 * 109.47202 * 188.99180 * 1 2 3 29 29 H 1.09000 * 109.46670 * 171.00641 * 3 2 1 30 30 H 1.08999 * 109.46520 * 291.00849 * 3 2 1 31 31 H 1.08999 * 109.46970 * 51.00280 * 3 2 1 32 32 H 1.08999 * 114.56474 * 105.52112 * 4 2 1 33 33 H 1.09000 * 114.57048 * 331.71339 * 4 2 1 34 34 H 1.08998 * 109.47265 * 61.58309 * 7 5 4 35 35 H 1.09001 * 109.46835 * 301.57805 * 7 5 4 36 36 H 0.97003 * 119.99837 * 359.71595 * 8 7 5 37 37 H 1.08002 * 119.82159 * 359.97021 * 12 11 9 38 38 H 1.07999 * 119.79869 * 180.25691 * 13 12 11 39 39 H 1.07992 * 119.98182 * 179.74757 * 14 13 12 40 40 H 0.96996 * 120.00198 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.19916 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1200 1.4117 0.0000 4 6 2.1389 -0.9156 -1.0691 5 6 3.1335 -1.1892 0.0659 6 1 3.9734 -0.4947 0.0831 7 6 3.5755 -2.6517 0.1468 8 7 4.4905 -2.8234 1.2780 9 6 5.0110 -4.0374 1.5455 10 8 4.7173 -4.9909 0.8513 11 6 5.9395 -4.2095 2.6835 12 6 6.2824 -3.1111 3.4796 13 6 7.1457 -3.2654 4.5494 14 6 7.6866 -4.4993 4.8367 15 6 7.3578 -5.6146 4.0436 16 6 7.9110 -6.8830 4.3362 17 1 8.8507 -6.9536 4.8638 18 6 7.2408 -8.0465 3.9420 19 7 5.9741 -7.9943 3.6192 20 14 8.1550 -9.6742 3.8767 21 1 8.0474 -10.3555 5.1919 22 1 7.5590 -10.5348 2.8234 23 1 9.5852 -9.4266 3.5633 24 6 6.4761 -5.4615 2.9602 25 8 2.0991 -0.8547 1.0003 26 1 -0.3634 0.6466 0.7987 27 1 -0.3633 0.3683 -0.9593 28 1 -0.3634 -1.0151 0.1606 29 1 3.1966 1.3555 0.1607 30 1 1.9201 1.8889 -0.9594 31 1 1.6634 1.9963 0.7987 32 1 2.5623 -0.3921 -1.9263 33 1 1.5177 -1.7684 -1.3427 34 1 4.0834 -2.9294 -0.7768 35 1 2.7017 -3.2881 0.2865 36 1 4.7247 -2.0625 1.8322 37 1 5.8677 -2.1384 3.2601 38 1 7.4010 -2.4122 5.1604 39 1 8.3630 -4.6110 5.6710 40 1 5.5097 -8.8007 3.3456 41 1 6.2169 -6.3114 2.3463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:39 Heat of formation + Delta-G solvation = -39.137509 kcal Electronic energy + Delta-G solvation = -22232.628383 eV Core-core repulsion = 18885.086771 eV Total energy + Delta-G solvation = -3347.541612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44538 -39.05237 -36.98161 -34.44162 -33.68272 -32.44824 -30.73122 -29.65190 -29.38290 -27.88342 -26.47387 -25.19612 -22.48768 -21.51569 -20.85697 -19.75030 -19.37302 -17.73138 -16.77299 -16.51880 -16.06555 -15.34895 -15.22562 -14.80394 -14.55347 -14.36825 -13.94044 -13.62546 -13.28608 -13.12568 -12.73322 -12.63389 -12.47570 -12.36775 -12.23034 -12.11885 -11.80105 -11.61804 -11.12999 -11.07881 -11.04263 -10.73105 -10.65881 -10.47458 -10.01956 -9.89807 -9.66570 -9.19114 -8.99222 -8.64612 -7.60147 -7.49180 -6.77371 -4.39027 2.23927 2.83583 3.09267 3.12314 3.18143 3.44449 3.68808 3.89673 3.94444 4.01114 4.47691 4.60321 4.66782 4.74321 4.87513 5.08010 5.15737 5.24662 5.34154 5.43686 5.54889 5.58756 5.63121 5.68464 5.74390 5.92152 5.94827 6.08622 6.12410 6.19271 6.30686 6.74064 6.86504 7.01157 7.04356 7.23623 7.40770 7.72737 7.78398 7.94994 8.11833 8.21592 8.52894 8.82623 8.85929 8.97696 10.17470 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.003178 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.996696 B = 8807.512054 C = 9451.467085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.156 4.156 4 C -0.170 4.170 5 C 0.046 3.954 6 H 0.096 0.904 7 C 0.123 3.877 8 N -0.735 5.735 9 C 0.564 3.436 10 O -0.548 6.548 11 C -0.128 4.128 12 C -0.217 4.217 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.784 5.784 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.091 4.091 25 O -0.351 6.351 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.284 0.716 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 14.422 -8.319 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.035 3.965 3 C -0.214 4.214 4 C -0.208 4.208 5 C -0.012 4.012 6 H 0.114 0.886 7 C -0.001 4.001 8 N -0.389 5.389 9 C 0.355 3.645 10 O -0.426 6.426 11 C -0.131 4.131 12 C -0.237 4.237 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.408 5.408 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.112 4.112 25 O -0.270 6.270 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.764 13.496 -8.620 17.797 hybrid contribution 0.389 -0.265 0.233 0.525 sum -7.375 13.231 -8.387 17.314 Atomic orbital electron populations 1.21837 0.92701 1.03225 1.02412 1.22481 0.95206 0.91545 0.87282 1.22031 1.01642 0.94837 1.02851 1.24491 0.98001 1.00468 0.97864 1.23490 0.92497 0.96707 0.88474 0.88640 1.21413 0.94133 0.93813 0.90729 1.45886 1.48754 1.11687 1.32569 1.18850 0.79810 0.81585 0.84290 1.90689 1.61344 1.39649 1.50913 1.19470 1.01057 0.95843 0.96750 1.20352 1.06429 0.95916 1.00985 1.20435 0.97929 0.96380 0.96877 1.21101 1.06836 0.93605 1.01619 1.17599 0.90502 0.92783 0.89503 1.19571 1.06692 0.89838 1.32858 0.90102 1.25966 0.94395 1.01590 0.92658 1.69788 1.08586 1.31305 1.31120 0.86289 0.80850 0.80681 0.78808 1.19458 1.19965 1.18400 1.21630 0.97735 0.94754 0.97044 1.90055 1.40672 1.61419 1.34857 0.91927 0.91090 0.91413 0.91635 0.91046 0.91439 0.89881 0.87894 0.90425 0.90924 0.76392 0.89248 0.88902 0.88610 0.90449 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.43 37.16 0.35 -0.81 16 2 C 0.07 0.69 1.69 -103.17 -0.17 0.52 16 3 C -0.16 -1.15 9.27 37.16 0.34 -0.81 16 4 C -0.17 -1.46 7.31 -26.35 -0.19 -1.65 16 5 C 0.05 0.52 3.77 -39.28 -0.15 0.37 16 6 H 0.10 0.93 7.11 -51.93 -0.37 0.56 16 7 C 0.12 1.79 5.72 -4.04 -0.02 1.77 16 8 N -0.73 -12.87 5.51 -61.24 -0.34 -13.20 16 9 C 0.56 12.80 7.77 -12.32 -0.10 12.70 16 10 O -0.55 -14.12 16.33 5.33 0.09 -14.03 16 11 C -0.13 -3.11 5.87 -105.04 -0.62 -3.73 16 12 C -0.22 -4.70 9.55 -38.92 -0.37 -5.07 16 13 C -0.10 -2.14 10.01 -39.72 -0.40 -2.53 16 14 C -0.21 -5.12 9.78 -38.81 -0.38 -5.50 16 15 C 0.10 2.65 5.57 -106.87 -0.59 2.06 16 16 C -0.46 -12.26 9.05 -37.73 -0.34 -12.60 16 17 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 18 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 19 N -0.78 -21.11 10.97 55.55 0.61 -20.50 16 20 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 25 O -0.35 -4.59 12.21 -35.23 -0.43 -5.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.49 6.87 -51.93 -0.36 0.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 6.27 6.49 -40.82 -0.26 6.00 16 37 H 0.09 1.62 6.38 -52.49 -0.33 1.29 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 41 H 0.13 3.91 5.76 -52.49 -0.30 3.61 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -31.24 342.24 -8.82 -40.05 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.83 Total: 9.90 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.05 Total: -16.31 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.27 Total: -33.70 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.34 Total: -19.05 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.24 -8.82 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.917 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds