Wall clock time and date at job start Tue Mar 31 2020 07:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.68110 * 2 1 4 4 C 1.53366 * 113.39372 * 229.42214 * 2 1 3 5 5 C 1.53368 * 81.26289 * 218.61827 * 4 2 1 6 6 H 1.09006 * 113.43237 * 271.58180 * 5 4 2 7 7 C 1.52998 * 113.39247 * 141.38772 * 5 4 2 8 8 N 1.46500 * 109.47095 * 181.58362 * 7 5 4 9 9 C 1.34769 * 120.00234 * 179.97438 * 8 7 5 10 10 O 1.21546 * 120.00006 * 359.72440 * 9 8 7 11 11 C 1.47884 * 120.00388 * 179.71833 * 9 8 7 12 12 C 1.39924 * 120.02329 * 359.73344 * 11 9 8 13 13 C 1.38329 * 120.35824 * 179.71550 * 12 11 9 14 14 C 1.37760 * 120.41198 * 0.55318 * 13 12 11 15 15 C 1.40746 * 120.03663 * 359.72135 * 14 13 12 16 16 C 1.41437 * 120.17637 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00279 * 334.92566 * 16 15 14 18 18 C 1.39942 * 119.99928 * 154.93042 * 16 15 14 19 19 N 1.30820 * 120.00202 * 342.58418 * 18 16 15 20 20 Si 1.86800 * 119.99608 * 162.58261 * 18 16 15 21 21 H 1.48503 * 109.47241 * 90.00163 * 20 18 16 22 22 H 1.48502 * 109.47145 * 209.99600 * 20 18 16 23 23 H 1.48496 * 109.47550 * 330.00399 * 20 18 16 24 24 C 1.38994 * 120.02867 * 179.97438 * 11 9 8 25 25 O 1.43350 * 88.44638 * 26.48588 * 5 4 2 26 26 H 1.08998 * 109.47635 * 308.99082 * 1 2 3 27 27 H 1.08996 * 109.47115 * 68.99633 * 1 2 3 28 28 H 1.09010 * 109.47202 * 188.99180 * 1 2 3 29 29 H 1.09000 * 109.46670 * 171.00641 * 3 2 1 30 30 H 1.08999 * 109.46520 * 291.00849 * 3 2 1 31 31 H 1.08999 * 109.46970 * 51.00280 * 3 2 1 32 32 H 1.08999 * 114.56474 * 105.52112 * 4 2 1 33 33 H 1.09000 * 114.57048 * 331.71339 * 4 2 1 34 34 H 1.08998 * 109.47265 * 61.58309 * 7 5 4 35 35 H 1.09001 * 109.46835 * 301.57805 * 7 5 4 36 36 H 0.97003 * 119.99837 * 359.71595 * 8 7 5 37 37 H 1.08002 * 119.82159 * 359.97021 * 12 11 9 38 38 H 1.07999 * 119.79869 * 180.25691 * 13 12 11 39 39 H 1.07992 * 119.98182 * 179.74757 * 14 13 12 40 40 H 0.96996 * 120.00198 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.19916 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1200 1.4117 0.0000 4 6 2.1389 -0.9156 -1.0691 5 6 3.1335 -1.1892 0.0659 6 1 3.9734 -0.4947 0.0831 7 6 3.5755 -2.6517 0.1468 8 7 4.4905 -2.8234 1.2780 9 6 5.0110 -4.0374 1.5455 10 8 4.7173 -4.9909 0.8513 11 6 5.9395 -4.2095 2.6835 12 6 6.2824 -3.1111 3.4796 13 6 7.1457 -3.2654 4.5494 14 6 7.6866 -4.4993 4.8367 15 6 7.3578 -5.6146 4.0436 16 6 7.9110 -6.8830 4.3362 17 1 8.8507 -6.9536 4.8638 18 6 7.2408 -8.0465 3.9420 19 7 5.9741 -7.9943 3.6192 20 14 8.1550 -9.6742 3.8767 21 1 8.0474 -10.3555 5.1919 22 1 7.5590 -10.5348 2.8234 23 1 9.5852 -9.4266 3.5633 24 6 6.4761 -5.4615 2.9602 25 8 2.0991 -0.8547 1.0003 26 1 -0.3634 0.6466 0.7987 27 1 -0.3633 0.3683 -0.9593 28 1 -0.3634 -1.0151 0.1606 29 1 3.1966 1.3555 0.1607 30 1 1.9201 1.8889 -0.9594 31 1 1.6634 1.9963 0.7987 32 1 2.5623 -0.3921 -1.9263 33 1 1.5177 -1.7684 -1.3427 34 1 4.0834 -2.9294 -0.7768 35 1 2.7017 -3.2881 0.2865 36 1 4.7247 -2.0625 1.8322 37 1 5.8677 -2.1384 3.2601 38 1 7.4010 -2.4122 5.1604 39 1 8.3630 -4.6110 5.6710 40 1 5.5097 -8.8007 3.3456 41 1 6.2169 -6.3114 2.3463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:38 Heat of formation + Delta-G solvation = -59.317154 kcal Electronic energy + Delta-G solvation = -22233.503438 eV Core-core repulsion = 18885.086771 eV Total energy + Delta-G solvation = -3348.416667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27217 -40.80406 -38.82967 -35.99407 -35.53503 -33.23592 -32.32988 -31.31976 -30.86024 -28.46692 -27.68818 -26.99935 -24.10445 -22.89806 -22.46700 -21.20868 -20.34389 -19.52336 -18.09814 -17.65553 -17.35980 -16.92819 -16.50780 -16.47279 -16.00596 -15.79202 -15.12990 -15.05423 -14.74874 -14.38681 -14.27100 -13.98060 -13.80577 -13.45848 -13.12004 -13.03286 -12.93276 -12.78009 -12.74417 -12.56008 -12.51940 -12.20692 -11.97747 -11.88023 -11.52275 -11.36570 -11.07406 -10.78816 -10.70800 -10.21628 -9.48625 -9.39945 -8.67057 -6.39170 0.35685 0.99693 1.36000 1.46030 1.52637 2.06467 2.16469 2.19559 2.77691 2.81076 3.18338 3.68418 3.70276 3.87056 3.96718 4.01251 4.12331 4.23621 4.39581 4.40912 4.57720 4.66200 4.70022 4.74590 4.84713 4.89686 4.90726 4.96817 5.07729 5.09306 5.17509 5.29179 5.30465 5.36666 5.39139 5.47243 5.50819 5.84854 5.90955 6.03906 6.27014 6.47756 6.64822 6.86845 6.93438 7.25839 8.29947 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.003178 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.996696 B = 8807.512054 C = 9451.467085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 C -0.154 4.154 4 C -0.159 4.159 5 C 0.049 3.951 6 H 0.117 0.883 7 C 0.119 3.881 8 N -0.713 5.713 9 C 0.559 3.441 10 O -0.590 6.590 11 C -0.140 4.140 12 C -0.198 4.198 13 C -0.095 4.095 14 C -0.216 4.216 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.827 5.827 20 Si 0.984 3.016 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.254 1.254 24 C -0.130 4.130 25 O -0.387 6.387 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.286 0.714 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 17.247 -8.655 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 C -0.211 4.211 4 C -0.196 4.196 5 C -0.009 4.009 6 H 0.135 0.865 7 C -0.004 4.004 8 N -0.365 5.365 9 C 0.349 3.651 10 O -0.472 6.472 11 C -0.144 4.144 12 C -0.218 4.218 13 C -0.113 4.113 14 C -0.236 4.236 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.104 0.896 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.150 4.150 25 O -0.307 6.307 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.559 16.393 -8.946 20.147 hybrid contribution 0.244 -0.913 0.343 1.006 sum -7.315 15.480 -8.603 19.161 Atomic orbital electron populations 1.21873 0.92144 1.02465 1.03767 1.22773 0.95851 0.92217 0.86290 1.22045 1.01420 0.93502 1.04134 1.24465 0.96753 1.00403 0.98021 1.23583 0.93378 0.94246 0.89683 0.86537 1.21639 0.92727 0.96398 0.89636 1.45726 1.47681 1.10129 1.32988 1.18771 0.79891 0.82642 0.83791 1.90662 1.62862 1.41406 1.52221 1.19784 1.01051 0.95792 0.97733 1.20838 1.04827 0.96712 0.99441 1.20926 0.96615 0.96838 0.96919 1.21422 1.06808 0.93912 1.01485 1.17956 0.91257 0.94149 0.90151 1.19866 1.07380 0.90775 1.34625 0.89647 1.26894 0.94876 1.05255 0.91655 1.69894 1.10305 1.32324 1.32717 0.85176 0.79411 0.75790 0.79192 1.18137 1.19741 1.17735 1.21437 1.00362 0.95215 0.98029 1.90036 1.41577 1.62601 1.36510 0.91912 0.88760 0.92906 0.91623 0.88786 0.91595 0.87083 0.88200 0.89750 0.92864 0.75008 0.84898 0.84289 0.87169 0.90313 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.43 71.98 0.68 -1.37 16 2 C 0.07 1.09 1.69 -18.92 -0.03 1.05 16 3 C -0.15 -1.76 9.27 71.98 0.67 -1.10 16 4 C -0.16 -2.30 7.31 30.84 0.23 -2.07 16 5 C 0.05 0.98 3.77 22.46 0.08 1.07 16 6 H 0.12 1.87 7.11 -2.38 -0.02 1.85 16 7 C 0.12 3.37 5.72 86.38 0.49 3.86 16 8 N -0.71 -24.19 5.51 -465.95 -2.57 -26.76 16 9 C 0.56 25.77 7.77 86.80 0.67 26.45 16 10 O -0.59 -31.81 16.33 -3.86 -0.06 -31.87 16 11 C -0.14 -6.90 5.87 -20.13 -0.12 -7.02 16 12 C -0.20 -8.11 9.55 22.70 0.22 -7.90 16 13 C -0.10 -3.87 10.01 22.18 0.22 -3.65 16 14 C -0.22 -10.32 9.78 22.77 0.22 -10.10 16 15 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 16 C -0.50 -27.52 9.05 23.47 0.21 -27.31 16 17 H 0.09 4.43 7.90 -2.91 -0.02 4.41 16 18 C 0.03 1.49 5.14 85.26 0.44 1.93 16 19 N -0.83 -47.17 10.97 21.82 0.24 -46.93 16 20 Si 0.98 40.21 29.59 68.60 2.03 42.24 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 24 C -0.13 -7.41 8.23 23.01 0.19 -7.23 16 25 O -0.39 -9.49 12.21 -148.98 -1.82 -11.31 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.75 6.87 -2.39 -0.02 0.74 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 1.01 8.11 -2.39 -0.02 0.99 16 33 H 0.10 1.52 8.12 -2.39 -0.02 1.50 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 11.82 6.49 -92.71 -0.60 11.22 16 37 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.29 15.06 8.30 -92.71 -0.77 14.29 16 41 H 0.10 6.24 5.76 -2.91 -0.02 6.23 16 Total: -1.00 -72.82 342.24 2.32 -70.50 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.44 Total: 33.89 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.06 Total: -29.76 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -2.33 Total: -73.69 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.88 Total: -43.18 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -72.82 2.32 -70.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.184 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds