Wall clock time and date at job start Tue Mar 31 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 113.03232 * 2 1 4 4 C 1.54028 * 113.86664 * 131.97588 * 2 1 3 5 5 C 1.54029 * 85.82491 * 136.72897 * 4 2 1 6 6 H 1.09001 * 113.86901 * 91.69358 * 5 4 2 7 7 C 1.52997 * 113.86914 * 223.27691 * 5 4 2 8 8 N 1.46499 * 109.47286 * 184.99452 * 7 5 4 9 9 C 1.34780 * 119.99877 * 179.97438 * 8 7 5 10 10 O 1.21545 * 119.99723 * 0.02562 * 9 8 7 11 11 C 1.47884 * 119.99785 * 179.72550 * 9 8 7 12 12 C 1.39919 * 120.02637 * 0.28032 * 11 9 8 13 13 C 1.38334 * 120.35877 * 179.97438 * 12 11 9 14 14 C 1.37751 * 120.40893 * 0.02562 * 13 12 11 15 15 C 1.40746 * 120.04206 * 359.97438 * 14 13 12 16 16 C 1.41442 * 120.17831 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99831 * 150.19444 * 16 15 14 18 18 C 1.39934 * 119.99961 * 330.19927 * 16 15 14 19 19 N 1.30824 * 120.00266 * 161.72441 * 18 16 15 20 20 Si 1.86800 * 119.99999 * 341.72144 * 18 16 15 21 21 H 1.48502 * 109.47406 * 95.41613 * 20 18 16 22 22 H 1.48498 * 109.47299 * 215.41467 * 20 18 16 23 23 H 1.48499 * 109.47211 * 335.41279 * 20 18 16 24 24 C 1.39002 * 120.02394 * 180.02562 * 11 9 8 25 25 O 1.44170 * 113.86459 * 227.85101 * 2 1 3 26 26 H 1.09006 * 109.47055 * 288.02361 * 1 2 3 27 27 H 1.08993 * 109.47300 * 48.02056 * 1 2 3 28 28 H 1.08997 * 109.47214 * 168.02472 * 1 2 3 29 29 H 1.09000 * 109.46695 * 191.97758 * 3 2 1 30 30 H 1.09002 * 109.46914 * 311.97775 * 3 2 1 31 31 H 1.09004 * 109.46792 * 71.97845 * 3 2 1 32 32 H 1.08999 * 113.81998 * 22.50091 * 4 2 1 33 33 H 1.09000 * 113.93059 * 250.96858 * 4 2 1 34 34 H 1.09000 * 109.47211 * 64.99643 * 7 5 4 35 35 H 1.09002 * 109.47261 * 304.99759 * 7 5 4 36 36 H 0.96998 * 119.99937 * 0.02562 * 8 7 5 37 37 H 1.07993 * 119.82089 * 359.97438 * 12 11 9 38 38 H 1.07993 * 119.79319 * 180.02562 * 13 12 11 39 39 H 1.08007 * 119.97700 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00427 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.19831 * 0.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1286 1.4081 0.0000 4 6 2.1532 -0.9421 1.0472 5 6 3.1307 -1.3536 -0.0698 6 1 4.0485 -0.7660 -0.0913 7 6 3.3828 -2.8607 -0.1476 8 7 4.4100 -3.1325 -1.1562 9 6 4.7975 -4.4005 -1.3986 10 8 4.2944 -5.3183 -0.7807 11 6 5.8300 -4.6754 -2.4209 12 6 6.4092 -3.6192 -3.1328 13 6 7.3760 -3.8685 -4.0903 14 6 7.7794 -5.1589 -4.3544 15 6 7.2081 -6.2342 -3.6485 16 6 7.6205 -7.5602 -3.9170 17 1 7.5901 -8.3041 -3.1346 18 6 8.0678 -7.9083 -5.1964 19 7 8.7728 -8.9967 -5.3693 20 14 7.6583 -6.8189 -6.6576 21 1 8.7866 -5.8876 -6.9124 22 1 7.4336 -7.6641 -7.8577 23 1 6.4291 -6.0389 -6.3644 24 6 6.2297 -5.9829 -2.6718 25 8 2.1133 -0.8848 -0.9775 26 1 -0.3633 0.3180 0.9773 27 1 -0.3633 0.6873 -0.7639 28 1 -0.3633 -1.0053 -0.2132 29 1 3.1959 1.3491 -0.2133 30 1 1.6382 2.0114 -0.7640 31 1 1.9782 1.8668 0.9773 32 1 1.4889 -1.7443 1.3683 33 1 2.6292 -0.4244 1.8800 34 1 2.4593 -3.3698 -0.4232 35 1 3.7217 -3.2230 0.8230 36 1 4.8118 -2.4000 -1.6489 37 1 6.0998 -2.6039 -2.9336 38 1 7.8173 -3.0464 -4.6340 39 1 8.5351 -5.3455 -5.1032 40 1 9.0826 -9.2382 -6.2562 41 1 5.7879 -6.8009 -2.1221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:42 Heat of formation + Delta-G solvation = -41.664627 kcal Electronic energy + Delta-G solvation = -22045.828979 eV Core-core repulsion = 18698.177783 eV Total energy + Delta-G solvation = -3347.651196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08881 -39.31312 -37.30235 -34.66637 -33.67703 -32.54782 -30.99559 -30.14632 -29.69745 -27.91715 -26.63740 -25.11568 -22.96910 -21.80394 -20.65520 -20.07443 -19.47522 -17.95030 -16.81331 -16.54435 -16.27183 -15.69714 -15.54340 -14.80971 -14.71337 -14.61528 -14.03443 -13.64482 -13.57536 -13.20613 -12.88231 -12.75611 -12.73486 -12.51831 -12.39902 -12.17507 -11.98767 -11.87303 -11.58870 -11.14500 -11.03371 -10.77503 -10.68179 -10.53559 -10.00910 -9.92358 -9.71649 -9.42777 -9.14123 -8.85686 -7.86066 -7.75203 -6.99998 -4.54636 1.92302 2.52435 3.06241 3.17353 3.18426 3.27286 3.48771 3.63211 3.94172 3.95750 4.43204 4.49360 4.49556 4.64040 4.78200 4.99163 5.10229 5.18200 5.26130 5.32455 5.35743 5.41257 5.51934 5.55658 5.64012 5.77450 5.88463 5.89517 6.00865 6.04131 6.18432 6.39385 6.63697 6.67238 6.71360 6.98444 7.21657 7.41409 7.50561 7.75301 7.79730 8.01467 8.28764 8.53786 8.68774 8.73254 10.02163 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.002991 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.683857 B = 9359.002208 C = 9720.484420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 C -0.153 4.153 4 C -0.170 4.170 5 C 0.051 3.949 6 H 0.098 0.902 7 C 0.125 3.875 8 N -0.733 5.733 9 C 0.564 3.436 10 O -0.549 6.549 11 C -0.108 4.108 12 C -0.216 4.216 13 C -0.083 4.083 14 C -0.222 4.222 15 C 0.082 3.918 16 C -0.442 4.442 17 H 0.094 0.906 18 C 0.083 3.917 19 N -0.804 5.804 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.135 4.135 25 O -0.364 6.364 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.402 0.598 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.286 0.714 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 18.602 8.596 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 C -0.210 4.210 4 C -0.208 4.208 5 C -0.007 4.007 6 H 0.115 0.885 7 C 0.001 3.999 8 N -0.387 5.387 9 C 0.354 3.646 10 O -0.427 6.427 11 C -0.111 4.111 12 C -0.236 4.236 13 C -0.101 4.101 14 C -0.242 4.242 15 C 0.079 3.921 16 C -0.471 4.471 17 H 0.112 0.888 18 C -0.136 4.136 19 N -0.428 5.428 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.156 4.156 25 O -0.284 6.284 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.238 0.762 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.990 17.641 8.655 22.514 hybrid contribution 0.254 0.780 -0.864 1.191 sum -10.736 18.421 7.792 22.700 Atomic orbital electron populations 1.21795 0.92372 1.03319 1.02490 1.22712 0.94898 0.91071 0.87326 1.21962 1.01586 0.94719 1.02751 1.24813 0.98040 0.99642 0.98269 1.23654 0.93077 0.95239 0.88735 0.88485 1.21374 0.92724 0.92689 0.93122 1.45900 1.41978 1.09012 1.41769 1.18787 0.81738 0.81694 0.82363 1.90695 1.56743 1.44263 1.51007 1.19417 0.98442 0.95191 0.98084 1.20389 1.04007 0.95948 1.03224 1.20510 0.96661 0.95975 0.96981 1.21179 1.04455 0.92694 1.05829 1.17701 0.89719 0.93468 0.91245 1.19520 1.35080 0.94996 0.97457 0.88831 1.26164 0.91123 0.95221 1.01086 1.69689 1.24166 1.23211 1.25692 0.86315 0.81526 0.79605 0.78874 1.19547 1.21654 1.16666 1.21268 0.98334 0.94244 1.01704 1.89877 1.44971 1.57890 1.35629 0.90949 0.91800 0.91329 0.91688 0.91467 0.91018 0.88296 0.90491 0.90616 0.90110 0.76237 0.88615 0.88270 0.87870 0.90318 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.48 37.16 0.35 -0.67 16 2 C 0.08 0.67 1.82 -90.17 -0.16 0.51 16 3 C -0.15 -1.02 9.38 37.16 0.35 -0.67 16 4 C -0.17 -1.32 7.11 -25.66 -0.18 -1.50 16 5 C 0.05 0.51 4.18 -26.29 -0.11 0.40 16 6 H 0.10 0.85 7.85 -51.93 -0.41 0.44 16 7 C 0.12 1.61 5.75 -4.04 -0.02 1.58 16 8 N -0.73 -11.31 5.51 -61.24 -0.34 -11.65 16 9 C 0.56 11.37 7.77 -12.31 -0.10 11.27 16 10 O -0.55 -12.61 16.33 5.33 0.09 -12.53 16 11 C -0.11 -2.36 5.87 -105.04 -0.62 -2.98 16 12 C -0.22 -4.25 9.55 -38.92 -0.37 -4.62 16 13 C -0.08 -1.72 10.01 -39.72 -0.40 -2.11 16 14 C -0.22 -5.23 7.17 -38.81 -0.28 -5.51 16 15 C 0.08 2.08 5.10 -106.87 -0.55 1.54 16 16 C -0.44 -12.00 9.57 -37.73 -0.36 -12.36 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.08 2.18 5.40 -17.35 -0.09 2.08 16 19 N -0.80 -21.31 13.93 55.55 0.77 -20.54 16 20 Si 0.91 20.56 24.52 -169.99 -4.17 16.40 16 21 H -0.27 -5.83 6.71 56.52 0.38 -5.45 16 22 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 24 C -0.14 -3.31 9.34 -38.44 -0.36 -3.67 16 25 O -0.36 -4.35 11.97 -35.23 -0.42 -4.78 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 33 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 5.43 6.49 -40.82 -0.26 5.17 16 37 H 0.10 1.54 6.38 -52.49 -0.33 1.20 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.10 2.40 4.72 -52.48 -0.25 2.16 16 40 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 41 H 0.12 2.87 7.64 -52.49 -0.40 2.47 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -30.41 338.64 -7.72 -38.13 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.86 Total: 6.58 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.90 Total: -16.71 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.44 Total: -32.19 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.33 Total: -17.30 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.17 Total: 16.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.41 -7.72 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.535 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds