Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 113.03232 * 2 1 4 4 C 1.54028 * 113.86664 * 131.97588 * 2 1 3 5 5 C 1.54029 * 85.82491 * 136.72897 * 4 2 1 6 6 H 1.09001 * 113.86901 * 91.69358 * 5 4 2 7 7 C 1.52997 * 113.86914 * 223.27691 * 5 4 2 8 8 N 1.46499 * 109.47286 * 184.99452 * 7 5 4 9 9 C 1.34780 * 119.99877 * 179.97438 * 8 7 5 10 10 O 1.21545 * 119.99723 * 0.02562 * 9 8 7 11 11 C 1.47884 * 119.99785 * 179.72550 * 9 8 7 12 12 C 1.39919 * 120.02637 * 0.28032 * 11 9 8 13 13 C 1.38334 * 120.35877 * 179.97438 * 12 11 9 14 14 C 1.37751 * 120.40893 * 0.02562 * 13 12 11 15 15 C 1.40746 * 120.04206 * 359.97438 * 14 13 12 16 16 C 1.41442 * 120.17831 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99831 * 150.19444 * 16 15 14 18 18 C 1.39934 * 119.99961 * 330.19927 * 16 15 14 19 19 N 1.30824 * 120.00266 * 161.72441 * 18 16 15 20 20 Si 1.86800 * 119.99999 * 341.72144 * 18 16 15 21 21 H 1.48502 * 109.47406 * 95.41613 * 20 18 16 22 22 H 1.48498 * 109.47299 * 215.41467 * 20 18 16 23 23 H 1.48499 * 109.47211 * 335.41279 * 20 18 16 24 24 C 1.39002 * 120.02394 * 180.02562 * 11 9 8 25 25 O 1.44170 * 113.86459 * 227.85101 * 2 1 3 26 26 H 1.09006 * 109.47055 * 288.02361 * 1 2 3 27 27 H 1.08993 * 109.47300 * 48.02056 * 1 2 3 28 28 H 1.08997 * 109.47214 * 168.02472 * 1 2 3 29 29 H 1.09000 * 109.46695 * 191.97758 * 3 2 1 30 30 H 1.09002 * 109.46914 * 311.97775 * 3 2 1 31 31 H 1.09004 * 109.46792 * 71.97845 * 3 2 1 32 32 H 1.08999 * 113.81998 * 22.50091 * 4 2 1 33 33 H 1.09000 * 113.93059 * 250.96858 * 4 2 1 34 34 H 1.09000 * 109.47211 * 64.99643 * 7 5 4 35 35 H 1.09002 * 109.47261 * 304.99759 * 7 5 4 36 36 H 0.96998 * 119.99937 * 0.02562 * 8 7 5 37 37 H 1.07993 * 119.82089 * 359.97438 * 12 11 9 38 38 H 1.07993 * 119.79319 * 180.02562 * 13 12 11 39 39 H 1.08007 * 119.97700 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00427 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.19831 * 0.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1286 1.4081 0.0000 4 6 2.1532 -0.9421 1.0472 5 6 3.1307 -1.3536 -0.0698 6 1 4.0485 -0.7660 -0.0913 7 6 3.3828 -2.8607 -0.1476 8 7 4.4100 -3.1325 -1.1562 9 6 4.7975 -4.4005 -1.3986 10 8 4.2944 -5.3183 -0.7807 11 6 5.8300 -4.6754 -2.4209 12 6 6.4092 -3.6192 -3.1328 13 6 7.3760 -3.8685 -4.0903 14 6 7.7794 -5.1589 -4.3544 15 6 7.2081 -6.2342 -3.6485 16 6 7.6205 -7.5602 -3.9170 17 1 7.5901 -8.3041 -3.1346 18 6 8.0678 -7.9083 -5.1964 19 7 8.7728 -8.9967 -5.3693 20 14 7.6583 -6.8189 -6.6576 21 1 8.7866 -5.8876 -6.9124 22 1 7.4336 -7.6641 -7.8577 23 1 6.4291 -6.0389 -6.3644 24 6 6.2297 -5.9829 -2.6718 25 8 2.1133 -0.8848 -0.9775 26 1 -0.3633 0.3180 0.9773 27 1 -0.3633 0.6873 -0.7639 28 1 -0.3633 -1.0053 -0.2132 29 1 3.1959 1.3491 -0.2133 30 1 1.6382 2.0114 -0.7640 31 1 1.9782 1.8668 0.9773 32 1 1.4889 -1.7443 1.3683 33 1 2.6292 -0.4244 1.8800 34 1 2.4593 -3.3698 -0.4232 35 1 3.7217 -3.2230 0.8230 36 1 4.8118 -2.4000 -1.6489 37 1 6.0998 -2.6039 -2.9336 38 1 7.8173 -3.0464 -4.6340 39 1 8.5351 -5.3455 -5.1032 40 1 9.0826 -9.2382 -6.2562 41 1 5.7879 -6.8009 -2.1221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -62.298201 kcal Electronic energy + Delta-G solvation = -22046.723718 eV Core-core repulsion = 18698.177783 eV Total energy + Delta-G solvation = -3348.545935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84642 -40.89226 -39.06113 -36.03367 -35.55196 -33.28143 -32.62366 -31.84654 -30.83162 -28.42860 -27.73164 -26.88339 -24.51189 -22.82030 -22.38850 -21.63808 -20.19313 -19.61545 -18.17233 -17.61490 -17.46902 -17.29805 -16.57288 -16.43957 -16.06260 -15.85906 -15.45901 -15.01883 -14.67424 -14.56437 -14.42090 -14.02735 -13.84552 -13.66363 -13.38867 -13.16166 -13.08646 -12.85313 -12.71806 -12.68573 -12.47981 -12.32059 -11.91022 -11.77506 -11.57041 -11.29278 -11.20696 -10.85476 -10.64291 -10.24888 -9.64419 -9.57334 -8.92731 -6.56499 0.15732 0.72873 1.24711 1.40910 1.47825 1.92219 2.09378 2.12453 2.57784 2.64222 3.27308 3.44025 3.67415 3.87086 3.90338 4.00047 4.11266 4.25121 4.27084 4.39397 4.40889 4.55150 4.68142 4.71333 4.75238 4.85433 4.87566 4.90348 4.90496 5.00388 5.09953 5.14306 5.29624 5.35975 5.40924 5.43343 5.52124 5.63408 5.70075 5.83194 6.08900 6.28451 6.51761 6.64574 6.72961 7.18142 8.16324 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033740 B = 0.002991 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.683857 B = 9359.002208 C = 9720.484420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.151 4.151 4 C -0.161 4.161 5 C 0.053 3.947 6 H 0.118 0.882 7 C 0.122 3.878 8 N -0.710 5.710 9 C 0.561 3.439 10 O -0.586 6.586 11 C -0.114 4.114 12 C -0.183 4.183 13 C -0.082 4.082 14 C -0.225 4.225 15 C 0.066 3.934 16 C -0.488 4.488 17 H 0.050 0.950 18 C 0.046 3.954 19 N -0.848 5.848 20 Si 0.967 3.033 21 H -0.245 1.245 22 H -0.277 1.277 23 H -0.253 1.253 24 C -0.166 4.166 25 O -0.398 6.398 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.415 0.585 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.296 0.704 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 23.662 8.411 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.034 3.966 3 C -0.208 4.208 4 C -0.198 4.198 5 C -0.005 4.005 6 H 0.136 0.864 7 C -0.001 4.001 8 N -0.363 5.363 9 C 0.350 3.650 10 O -0.468 6.468 11 C -0.117 4.117 12 C -0.202 4.202 13 C -0.099 4.099 14 C -0.245 4.245 15 C 0.063 3.937 16 C -0.518 4.518 17 H 0.069 0.931 18 C -0.169 4.169 19 N -0.474 5.474 20 Si 0.789 3.211 21 H -0.170 1.170 22 H -0.204 1.204 23 H -0.177 1.177 24 C -0.187 4.187 25 O -0.318 6.318 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.253 0.747 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.468 22.754 8.483 26.855 hybrid contribution 0.274 -0.585 -0.636 0.907 sum -11.195 22.169 7.847 26.045 Atomic orbital electron populations 1.21837 0.91885 1.02575 1.03798 1.23003 0.95477 0.91672 0.86439 1.21978 1.01309 0.93530 1.03984 1.24758 0.97233 0.99528 0.98322 1.23698 0.94112 0.92953 0.89740 0.86422 1.21555 0.91030 0.95121 0.92395 1.45743 1.41497 1.07482 1.41560 1.18621 0.81508 0.82878 0.81954 1.90683 1.57975 1.45837 1.52295 1.19699 0.98744 0.94675 0.98620 1.20994 1.01356 0.97529 1.00365 1.21043 0.96152 0.95917 0.96830 1.21400 1.04220 0.93490 1.05347 1.17780 0.90270 0.93432 0.92210 1.19462 1.39036 0.95543 0.97730 0.93146 1.26894 0.90563 0.96565 1.02881 1.69719 1.25867 1.25013 1.26816 0.85472 0.81326 0.78407 0.75884 1.16957 1.20369 1.17704 1.21194 0.99494 0.95322 1.02684 1.89854 1.45785 1.58955 1.37241 0.88835 0.91675 0.92769 0.91753 0.91547 0.88974 0.88449 0.88076 0.92374 0.89463 0.74712 0.83510 0.83405 0.87466 0.89396 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.48 71.98 0.68 -1.07 16 2 C 0.07 1.02 1.82 -10.50 -0.02 1.00 16 3 C -0.15 -1.48 9.38 71.99 0.68 -0.81 16 4 C -0.16 -1.99 7.11 31.29 0.22 -1.77 16 5 C 0.05 0.90 4.18 30.88 0.13 1.03 16 6 H 0.12 1.53 7.85 -2.39 -0.02 1.52 16 7 C 0.12 2.91 5.75 86.38 0.50 3.40 16 8 N -0.71 -20.01 5.51 -465.94 -2.57 -22.57 16 9 C 0.56 22.09 7.77 86.80 0.67 22.76 16 10 O -0.59 -27.52 16.33 -3.86 -0.06 -27.58 16 11 C -0.11 -4.85 5.87 -20.13 -0.12 -4.97 16 12 C -0.18 -6.38 9.55 22.70 0.22 -6.17 16 13 C -0.08 -2.99 10.01 22.18 0.22 -2.77 16 14 C -0.23 -10.22 7.17 22.77 0.16 -10.05 16 15 C 0.07 3.44 5.10 -21.32 -0.11 3.34 16 16 C -0.49 -28.45 9.57 23.47 0.22 -28.22 16 17 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 18 C 0.05 2.48 5.40 85.25 0.46 2.94 16 19 N -0.85 -47.23 13.93 21.82 0.30 -46.93 16 20 Si 0.97 42.23 24.52 68.60 1.68 43.91 16 21 H -0.24 -9.66 6.71 99.48 0.67 -9.00 16 22 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.25 -11.33 6.86 99.48 0.68 -10.65 16 24 C -0.17 -8.47 9.34 23.01 0.21 -8.26 16 25 O -0.40 -8.55 11.97 -148.98 -1.78 -10.34 16 26 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.65 7.59 -2.39 -0.02 0.63 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 1.24 8.05 -2.39 -0.02 1.22 16 33 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 9.32 6.49 -92.71 -0.60 8.72 16 37 H 0.15 3.66 6.38 -2.91 -0.02 3.64 16 38 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.11 4.76 4.72 -2.91 -0.01 4.74 16 40 H 0.30 14.64 8.30 -92.71 -0.77 13.88 16 41 H 0.09 4.88 7.64 -2.91 -0.02 4.85 16 Total: -1.00 -71.38 338.64 2.08 -69.30 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.37 Total: 23.81 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.14 Total: -29.61 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -2.26 Total: -69.50 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.85 Total: -37.92 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.68 Total: 43.91 kcal Total: -71.38 2.08 -69.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.001 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds