Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.94139 * 2 1 4 4 C 1.38146 * 120.05439 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94590 * 359.97438 * 4 3 2 6 6 O 1.35932 * 120.05898 * 179.97438 * 5 4 3 7 7 C 1.34682 * 116.99915 * 77.06644 * 6 5 4 8 8 O 1.21522 * 119.99677 * 355.09581 * 7 6 5 9 9 N 1.34771 * 120.00024 * 175.09328 * 7 6 5 10 10 C 1.46935 * 120.63087 * 180.02562 * 9 7 6 11 11 C 1.53186 * 108.89192 * 126.46165 * 10 9 7 12 12 C 1.53044 * 109.31546 * 54.56690 * 11 10 9 13 13 C 1.50699 * 109.46080 * 178.62714 * 12 11 10 14 14 H 1.07993 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99987 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47210 * 89.99854 * 17 15 13 19 19 H 1.48499 * 109.47254 * 210.00007 * 17 15 13 20 20 H 1.48502 * 109.46951 * 329.99987 * 17 15 13 21 21 C 1.53044 * 109.53551 * 298.63611 * 12 11 10 22 22 C 1.46962 * 120.65725 * 359.81990 * 9 7 6 23 23 C 1.38732 * 119.88628 * 0.25099 * 5 4 3 24 24 C 1.38141 * 119.94755 * 359.49108 * 23 5 4 25 25 H 1.09000 * 109.46946 * 89.99859 * 1 2 3 26 26 H 1.09003 * 109.46849 * 209.99484 * 1 2 3 27 27 H 1.08994 * 109.47159 * 329.99338 * 1 2 3 28 28 H 1.07994 * 119.97514 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.03147 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.58261 * 6.60398 * 10 9 7 31 31 H 1.08997 * 109.58495 * 246.32110 * 10 9 7 32 32 H 1.09005 * 109.49866 * 174.51772 * 11 10 9 33 33 H 1.09004 * 109.50392 * 294.58232 * 11 10 9 34 34 H 1.08999 * 109.46008 * 58.65173 * 12 11 10 35 35 H 0.96997 * 119.99971 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.49758 * 181.31442 * 21 12 11 37 37 H 1.09008 * 109.49362 * 301.40790 * 21 12 11 38 38 H 1.08994 * 109.46960 * 113.74870 * 22 9 7 39 39 H 1.08999 * 109.70777 * 353.46595 * 22 9 7 40 40 H 1.07999 * 120.01981 * 179.73308 * 23 5 4 41 41 H 1.07991 * 119.97346 * 180.23161 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2009 -0.0005 5 6 4.2735 0.0002 -0.0005 6 8 5.6328 0.0002 -0.0016 7 6 6.2451 0.2693 1.1674 8 8 5.5874 0.5851 2.1392 9 7 7.5873 0.1883 1.2594 10 6 8.2696 0.4783 2.5280 11 6 9.1713 -0.7064 2.8884 12 6 10.1153 -0.9980 1.7195 13 6 11.0269 -2.1414 2.0836 14 1 10.9419 -2.6126 3.0516 15 6 11.9694 -2.5859 1.1808 16 7 12.0726 -2.0123 0.0018 17 14 13.0989 -4.0037 1.6317 18 1 12.4689 -5.2863 1.2275 19 1 14.3967 -3.8461 0.9273 20 1 13.3290 -4.0060 3.0987 21 6 9.2968 -1.3728 0.4819 22 6 8.3964 -0.1962 0.0944 23 6 3.5787 -1.2006 -0.0053 24 6 2.1973 -1.1980 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6558 2.1326 0.0004 29 1 4.1173 2.1369 -0.0001 30 1 7.5300 0.6273 3.3148 31 1 8.8746 1.3785 2.4200 32 1 9.7556 -0.4623 3.7756 33 1 8.5566 -1.5842 3.0877 34 1 10.7124 -0.1116 1.5052 35 1 12.7359 -2.3248 -0.6331 36 1 9.9703 -1.6030 -0.3437 37 1 8.6809 -2.2445 0.7034 38 1 9.0121 0.6483 -0.2150 39 1 7.7424 -0.4914 -0.7261 40 1 4.1175 -2.1366 -0.0096 41 1 1.6560 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194443143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -55.866173 kcal Electronic energy + Delta-G solvation = -22720.945348 eV Core-core repulsion = 19372.678327 eV Total energy + Delta-G solvation = -3348.267021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06365 -39.14809 -37.68576 -36.17789 -33.62472 -32.28796 -31.18662 -31.12658 -30.12658 -27.06837 -26.05130 -23.55941 -22.98513 -22.46227 -21.81779 -20.53462 -19.14893 -17.79005 -17.54929 -16.51928 -16.29172 -15.71607 -15.10951 -14.82810 -14.56374 -14.07147 -13.98751 -13.60824 -13.59367 -13.24694 -13.00773 -12.73279 -12.64276 -12.38672 -12.05508 -11.78213 -11.61544 -11.56591 -11.32978 -10.96020 -10.69345 -10.61775 -10.46336 -10.34287 -10.03873 -9.62357 -9.22882 -9.08661 -8.99423 -8.58079 -8.41277 -8.15707 -6.05053 -4.11329 0.97491 1.25798 2.50483 3.05414 3.27379 3.34603 3.37726 3.62703 4.25861 4.39422 4.68181 4.68537 4.85187 5.12267 5.22666 5.24745 5.33452 5.38550 5.54506 5.62153 5.71871 5.75770 5.85822 5.87785 6.04222 6.08811 6.13449 6.31079 6.32918 6.39174 6.41364 6.49514 6.59778 6.79216 6.97711 6.98856 7.11312 7.25147 7.63454 7.76670 7.88703 8.01501 8.37316 8.60478 8.91991 9.53951 11.00565 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.003251 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.639228 B = 8610.282612 C = 8902.757575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.109 4.109 4 C -0.112 4.112 5 C 0.106 3.894 6 O -0.306 6.306 7 C 0.643 3.357 8 O -0.573 6.573 9 N -0.577 5.577 10 C 0.127 3.873 11 C -0.125 4.125 12 C 0.047 3.953 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.124 4.124 22 C 0.106 3.894 23 C -0.114 4.114 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 4.903 -2.348 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.131 4.131 5 C 0.063 3.937 6 O -0.218 6.218 7 C 0.398 3.602 8 O -0.462 6.462 9 N -0.316 5.316 10 C 0.006 3.994 11 C -0.163 4.163 12 C 0.029 3.971 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.163 4.163 22 C -0.016 4.016 23 C -0.133 4.133 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.978 5.007 -2.228 18.795 hybrid contribution 0.801 -0.808 0.111 1.143 sum -17.176 4.200 -2.116 17.809 Atomic orbital electron populations 1.20782 0.90928 1.02893 1.02323 1.19982 0.96293 0.93116 0.99675 1.20864 0.93149 0.97840 1.00809 1.21320 0.94703 0.97561 0.99495 1.18314 0.79863 0.93456 1.02045 1.84310 1.18626 1.84475 1.34435 1.18302 0.83564 0.77538 0.80814 1.90964 1.64452 1.54097 1.36678 1.47211 1.01399 1.68757 1.14246 1.21820 0.95315 0.98969 0.83286 1.22054 0.97578 0.95888 1.00755 1.18660 0.91822 0.97059 0.89579 1.21186 1.16494 1.16571 1.00786 0.92649 1.24962 0.97189 0.96769 0.95063 1.69830 1.35138 1.41536 1.06524 0.86607 0.80202 0.82693 0.78572 1.20738 1.21240 1.19957 1.22041 0.96884 0.93893 1.03459 1.22079 0.93917 0.99655 0.85903 1.21226 0.94489 0.97455 1.00094 1.20869 0.93044 0.97890 1.00833 0.91085 0.91447 0.91480 0.85480 0.85489 0.89983 0.91516 0.91601 0.92766 0.95265 0.92927 0.87508 0.94189 0.91699 0.90738 0.85027 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.95 5.88 -104.60 -0.62 -1.56 16 3 C -0.11 -1.22 9.69 -39.60 -0.38 -1.61 16 4 C -0.11 -1.55 9.58 -39.43 -0.38 -1.93 16 5 C 0.11 1.65 5.14 -39.22 -0.20 1.45 16 6 O -0.31 -5.38 8.67 -24.73 -0.21 -5.60 16 7 C 0.64 12.37 8.31 54.05 0.45 12.82 16 8 O -0.57 -12.06 15.29 -19.29 -0.29 -12.35 16 9 N -0.58 -10.91 2.98 -178.54 -0.53 -11.44 16 10 C 0.13 2.30 6.43 -3.71 -0.02 2.28 16 11 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 12 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 13 C -0.51 -13.51 8.56 -34.44 -0.29 -13.80 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.30 11.30 55.43 0.63 -23.68 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.12 -2.77 5.15 -26.63 -0.14 -2.90 16 22 C 0.11 1.99 6.44 -3.71 -0.02 1.97 16 23 C -0.11 -1.56 9.99 -39.43 -0.39 -1.95 16 24 C -0.11 -1.21 9.69 -39.61 -0.38 -1.59 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.11 2.63 6.03 -51.93 -0.31 2.32 16 37 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.31 6.94 -51.93 -0.36 0.95 16 40 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -29.60 338.05 -8.86 -38.46 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.07 Total: 1.25 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.45 Total: -7.46 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.09 Total: -35.12 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.51 Total: -17.95 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.60 -8.86 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194443143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.407 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds