Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.94139 * 2 1 4 4 C 1.38146 * 120.05439 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94590 * 359.97438 * 4 3 2 6 6 O 1.35932 * 120.05898 * 179.97438 * 5 4 3 7 7 C 1.34682 * 116.99915 * 77.06644 * 6 5 4 8 8 O 1.21522 * 119.99677 * 355.09581 * 7 6 5 9 9 N 1.34771 * 120.00024 * 175.09328 * 7 6 5 10 10 C 1.46935 * 120.63087 * 180.02562 * 9 7 6 11 11 C 1.53186 * 108.89192 * 126.46165 * 10 9 7 12 12 C 1.53044 * 109.31546 * 54.56690 * 11 10 9 13 13 C 1.50699 * 109.46080 * 178.62714 * 12 11 10 14 14 H 1.07993 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99987 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47210 * 89.99854 * 17 15 13 19 19 H 1.48499 * 109.47254 * 210.00007 * 17 15 13 20 20 H 1.48502 * 109.46951 * 329.99987 * 17 15 13 21 21 C 1.53044 * 109.53551 * 298.63611 * 12 11 10 22 22 C 1.46962 * 120.65725 * 359.81990 * 9 7 6 23 23 C 1.38732 * 119.88628 * 0.25099 * 5 4 3 24 24 C 1.38141 * 119.94755 * 359.49108 * 23 5 4 25 25 H 1.09000 * 109.46946 * 89.99859 * 1 2 3 26 26 H 1.09003 * 109.46849 * 209.99484 * 1 2 3 27 27 H 1.08994 * 109.47159 * 329.99338 * 1 2 3 28 28 H 1.07994 * 119.97514 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.03147 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.58261 * 6.60398 * 10 9 7 31 31 H 1.08997 * 109.58495 * 246.32110 * 10 9 7 32 32 H 1.09005 * 109.49866 * 174.51772 * 11 10 9 33 33 H 1.09004 * 109.50392 * 294.58232 * 11 10 9 34 34 H 1.08999 * 109.46008 * 58.65173 * 12 11 10 35 35 H 0.96997 * 119.99971 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.49758 * 181.31442 * 21 12 11 37 37 H 1.09008 * 109.49362 * 301.40790 * 21 12 11 38 38 H 1.08994 * 109.46960 * 113.74870 * 22 9 7 39 39 H 1.08999 * 109.70777 * 353.46595 * 22 9 7 40 40 H 1.07999 * 120.01981 * 179.73308 * 23 5 4 41 41 H 1.07991 * 119.97346 * 180.23161 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2009 -0.0005 5 6 4.2735 0.0002 -0.0005 6 8 5.6328 0.0002 -0.0016 7 6 6.2451 0.2693 1.1674 8 8 5.5874 0.5851 2.1392 9 7 7.5873 0.1883 1.2594 10 6 8.2696 0.4783 2.5280 11 6 9.1713 -0.7064 2.8884 12 6 10.1153 -0.9980 1.7195 13 6 11.0269 -2.1414 2.0836 14 1 10.9419 -2.6126 3.0516 15 6 11.9694 -2.5859 1.1808 16 7 12.0726 -2.0123 0.0018 17 14 13.0989 -4.0037 1.6317 18 1 12.4689 -5.2863 1.2275 19 1 14.3967 -3.8461 0.9273 20 1 13.3290 -4.0060 3.0987 21 6 9.2968 -1.3728 0.4819 22 6 8.3964 -0.1962 0.0944 23 6 3.5787 -1.2006 -0.0053 24 6 2.1973 -1.1980 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6558 2.1326 0.0004 29 1 4.1173 2.1369 -0.0001 30 1 7.5300 0.6273 3.3148 31 1 8.8746 1.3785 2.4200 32 1 9.7556 -0.4623 3.7756 33 1 8.5566 -1.5842 3.0877 34 1 10.7124 -0.1116 1.5052 35 1 12.7359 -2.3248 -0.6331 36 1 9.9703 -1.6030 -0.3437 37 1 8.6809 -2.2445 0.7034 38 1 9.0121 0.6483 -0.2150 39 1 7.7424 -0.4914 -0.7261 40 1 4.1175 -2.1366 -0.0096 41 1 1.6560 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194443143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = -70.259800 kcal Electronic energy + Delta-G solvation = -22721.569502 eV Core-core repulsion = 19372.678327 eV Total energy + Delta-G solvation = -3348.891176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38588 -40.34282 -39.05131 -37.66927 -35.44224 -33.41037 -32.75316 -32.06251 -31.78755 -28.42043 -27.39754 -25.14390 -24.11664 -23.92988 -23.14084 -21.81903 -20.72432 -19.24819 -18.96195 -18.28680 -17.75285 -16.83875 -16.52004 -16.20421 -16.05742 -15.41312 -14.98643 -14.93822 -14.61660 -14.55056 -14.50699 -14.30706 -14.23539 -13.38717 -13.32620 -13.15967 -12.90667 -12.81815 -12.59959 -12.48436 -12.46841 -12.17358 -12.09403 -11.76710 -11.68558 -11.45047 -11.04611 -10.84693 -10.41330 -10.03025 -9.77803 -9.53606 -8.08011 -6.20980 -0.05746 0.31963 1.19198 1.41877 1.44047 1.52777 1.58557 2.44420 2.58301 2.96902 3.19017 3.81586 3.87907 3.96281 4.03216 4.17862 4.24660 4.35116 4.37269 4.41573 4.46485 4.54237 4.69016 4.75494 4.83059 4.88896 4.91487 5.01364 5.06902 5.14021 5.20272 5.28618 5.32956 5.35609 5.46982 5.47362 5.56073 5.63826 5.96537 5.97285 6.10056 6.23359 6.38495 6.88592 7.14990 7.46841 8.95785 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.003251 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.639228 B = 8610.282612 C = 8902.757575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.110 4.110 4 C -0.126 4.126 5 C 0.060 3.940 6 O -0.308 6.308 7 C 0.644 3.356 8 O -0.594 6.594 9 N -0.580 5.580 10 C 0.131 3.869 11 C -0.114 4.114 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.017 3.983 16 N -0.913 5.913 17 Si 0.949 3.051 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.114 4.114 22 C 0.119 3.881 23 C -0.129 4.129 24 C -0.109 4.109 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.954 5.012 -2.268 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.084 4.084 3 C -0.128 4.128 4 C -0.145 4.145 5 C 0.019 3.981 6 O -0.220 6.220 7 C 0.399 3.601 8 O -0.484 6.484 9 N -0.319 5.319 10 C 0.011 3.989 11 C -0.153 4.153 12 C 0.026 3.974 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.775 3.225 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.153 4.153 22 C -0.003 4.003 23 C -0.147 4.147 24 C -0.127 4.127 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.149 0.851 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.071 5.117 -2.154 20.825 hybrid contribution 1.329 -0.848 0.069 1.577 sum -18.742 4.270 -2.085 19.335 Atomic orbital electron populations 1.20874 0.88042 1.04163 1.03691 1.20471 0.98333 0.92417 0.97147 1.21243 0.92184 0.99617 0.99726 1.21468 0.96017 0.96885 1.00089 1.18751 0.79038 0.95031 1.05300 1.84327 1.20175 1.84140 1.33355 1.18402 0.83427 0.77089 0.81174 1.90928 1.64865 1.55032 1.37605 1.47218 1.01560 1.68800 1.14330 1.21797 0.95204 0.98554 0.83339 1.21900 0.97140 0.96403 0.99809 1.18633 0.92118 0.95353 0.91320 1.21531 1.17388 1.17513 1.00674 0.93202 1.25648 0.98554 0.98953 0.95088 1.69943 1.35586 1.42557 1.07119 0.85693 0.78465 0.79928 0.78368 1.20489 1.20882 1.19563 1.21806 0.96589 0.94799 1.02071 1.21885 0.93645 0.98507 0.86252 1.21407 0.95799 0.96829 1.00675 1.21251 0.92072 0.99650 0.99704 0.89475 0.90232 0.90257 0.82650 0.85730 0.89342 0.89781 0.90576 0.93865 0.97202 0.92916 0.89935 0.95570 0.90792 0.89505 0.85144 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.08 -1.52 5.88 -19.85 -0.12 -1.63 16 3 C -0.11 -2.24 9.69 22.26 0.22 -2.03 16 4 C -0.13 -3.42 9.58 22.37 0.21 -3.21 16 5 C 0.06 1.90 5.14 22.50 0.12 2.02 16 6 O -0.31 -10.97 8.67 0.28 0.00 -10.97 16 7 C 0.64 24.83 8.31 129.79 1.08 25.91 16 8 O -0.59 -25.00 15.29 19.77 0.30 -24.69 16 9 N -0.58 -21.84 2.98 -949.17 -2.83 -24.66 16 10 C 0.13 4.70 6.43 86.36 0.56 5.25 16 11 C -0.11 -4.61 5.30 30.67 0.16 -4.45 16 12 C 0.04 2.12 2.07 -11.51 -0.02 2.09 16 13 C -0.53 -28.51 8.56 25.60 0.22 -28.29 16 14 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 15 C 0.02 0.89 5.30 84.65 0.45 1.34 16 16 N -0.91 -50.48 11.30 21.45 0.24 -50.24 16 17 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.11 -5.19 5.15 30.66 0.16 -5.03 16 22 C 0.12 4.48 6.44 86.34 0.56 5.04 16 23 C -0.13 -3.46 9.99 22.36 0.22 -3.24 16 24 C -0.11 -2.21 9.69 22.25 0.22 -1.99 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 27 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 28 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.09 3.08 7.00 -2.38 -0.02 3.07 16 31 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.08 4.19 6.03 -2.39 -0.01 4.17 16 37 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.09 3.06 6.94 -2.39 -0.02 3.05 16 40 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.16 2.19 8.06 -2.92 -0.02 2.17 16 Total: -1.00 -64.07 338.05 5.49 -58.58 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.01 Total: 15.86 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 4.73 Total: -8.65 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -2.59 Total: -74.90 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: 0.30 Total: -35.66 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.07 5.49 -58.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194443143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.685 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds