Wall clock time and date at job start Tue Mar 31 2020 06:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.94404 * 2 1 4 4 C 1.38144 * 120.05385 * 180.27946 * 3 2 1 5 5 C 1.38721 * 119.94672 * 359.97438 * 4 3 2 6 6 O 1.35929 * 120.05365 * 179.97438 * 5 4 3 7 7 C 1.34684 * 116.99917 * 70.02611 * 6 5 4 8 8 O 1.21509 * 119.99573 * 5.94790 * 7 6 5 9 9 N 1.34779 * 120.00036 * 185.94768 * 7 6 5 10 10 C 1.46496 * 119.99902 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.41288 * 35.14670 * 10 9 7 12 12 C 1.52957 * 109.41170 * 155.00004 * 10 9 7 13 13 C 1.53228 * 109.40525 * 183.70688 * 12 10 9 14 14 C 1.51268 * 108.53864 * 305.37518 * 13 12 10 15 15 C 1.37876 * 120.85308 * 231.37104 * 14 13 12 16 16 N 1.31512 * 119.99687 * 359.97438 * 15 14 13 17 17 Si 1.86795 * 120.00107 * 179.97438 * 15 14 13 18 18 H 1.48499 * 109.47279 * 90.00062 * 17 15 14 19 19 H 1.48504 * 109.47267 * 209.99733 * 17 15 14 20 20 H 1.48503 * 109.47371 * 329.99508 * 17 15 14 21 21 C 1.51264 * 118.29912 * 51.34495 * 14 13 12 22 22 C 1.52961 * 109.41701 * 275.35803 * 10 9 7 23 23 C 1.38720 * 119.88901 * 0.02562 * 5 4 3 24 24 C 1.38147 * 119.94648 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47236 * 269.72558 * 1 2 3 26 26 H 1.08996 * 109.47224 * 29.72607 * 1 2 3 27 27 H 1.09003 * 109.46804 * 149.72719 * 1 2 3 28 28 H 1.07999 * 119.97003 * 0.27984 * 3 2 1 29 29 H 1.08003 * 120.02618 * 180.02562 * 4 3 2 30 30 H 0.96998 * 119.99991 * 0.02562 * 9 7 6 31 31 H 1.09003 * 109.48717 * 303.69064 * 12 10 9 32 32 H 1.08998 * 109.48356 * 63.73114 * 12 10 9 33 33 H 1.08996 * 109.62561 * 65.09020 * 13 12 10 34 34 H 1.08997 * 109.62876 * 185.47115 * 13 12 10 35 35 H 0.97010 * 119.99996 * 179.97438 * 16 15 14 36 36 H 1.09003 * 109.62912 * 68.37105 * 21 14 13 37 37 H 1.09005 * 109.62997 * 188.93978 * 21 14 13 38 38 H 1.08997 * 109.48099 * 296.27528 * 22 10 9 39 39 H 1.08995 * 109.48156 * 56.31527 * 22 10 9 40 40 H 1.08006 * 120.02881 * 180.02562 * 23 5 4 41 41 H 1.08004 * 119.97012 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0058 5 6 4.2734 0.0001 -0.0112 6 8 5.6327 0.0002 -0.0174 7 6 6.2493 0.4081 1.1083 8 8 5.5970 0.6511 2.1043 9 7 7.5897 0.5469 1.1301 10 6 8.2603 0.9912 2.3544 11 1 7.7384 0.5854 3.2211 12 6 9.7061 0.4920 2.3519 13 6 10.3800 0.8771 3.6731 14 6 10.2364 2.3702 3.8689 15 6 11.3339 3.1547 4.1537 16 7 12.5246 2.6064 4.2589 17 14 11.1294 4.9963 4.3902 18 1 10.8624 5.2849 5.8222 19 1 12.3727 5.6906 3.9688 20 1 9.9907 5.4777 3.5675 21 6 8.8581 2.9806 3.7436 22 6 8.2394 2.5193 2.4198 23 6 3.5786 -1.2006 -0.0111 24 6 2.1972 -1.1980 -0.0053 25 1 -0.3633 -0.0049 1.0276 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3633 -0.8876 -0.5181 28 1 1.6558 2.1326 0.0046 29 1 4.1173 2.1369 -0.0054 30 1 8.1103 0.3533 0.3349 31 1 9.7162 -0.5924 2.2413 32 1 10.2465 0.9473 1.5221 33 1 9.8972 0.3518 4.4971 34 1 11.4360 0.6096 3.6371 35 1 13.2968 3.1584 4.4589 36 1 8.2343 2.6501 4.5741 37 1 8.9370 4.0678 3.7515 38 1 8.8145 2.9266 1.5883 39 1 7.2099 2.8717 2.3573 40 1 4.1173 -2.1367 -0.0149 41 1 1.6559 -2.1326 -0.0049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194474630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:57 Heat of formation + Delta-G solvation = -66.226295 kcal Electronic energy + Delta-G solvation = -22490.957609 eV Core-core repulsion = 19142.241340 eV Total energy + Delta-G solvation = -3348.716270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12193 -39.12201 -37.66673 -36.13283 -33.88497 -32.35294 -31.51554 -31.18923 -29.73283 -27.63225 -26.55345 -23.34171 -22.96399 -21.81955 -21.50597 -20.62494 -19.70881 -18.57497 -17.57257 -16.58326 -16.10815 -15.75856 -15.24035 -14.77486 -14.45930 -14.40043 -14.08253 -13.67019 -13.58414 -13.29972 -12.88747 -12.66981 -12.39155 -12.17417 -12.12315 -11.84050 -11.69718 -11.61506 -11.07985 -10.90843 -10.77111 -10.73648 -10.47634 -10.15827 -10.03013 -9.59613 -9.14738 -9.09958 -8.97745 -8.61247 -8.53939 -8.40651 -6.13941 -4.05183 0.91545 1.19683 2.45686 2.99742 3.26276 3.34550 3.35475 3.58573 4.35821 4.43398 4.62237 4.64327 4.80993 5.07151 5.13684 5.16980 5.34000 5.38081 5.49321 5.60919 5.72187 5.79801 5.81902 6.06955 6.11137 6.24284 6.31266 6.36327 6.41950 6.46053 6.64438 6.67674 6.83031 6.89684 6.94185 7.05177 7.16824 7.39242 7.60332 7.64768 7.68478 7.81820 8.33456 8.60048 8.91788 9.50704 10.95402 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.003189 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.455921 B = 8778.072414 C = 9311.384034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.106 4.106 4 C -0.116 4.116 5 C 0.107 3.893 6 O -0.314 6.314 7 C 0.638 3.362 8 O -0.556 6.556 9 N -0.697 5.697 10 C 0.169 3.831 11 H 0.082 0.918 12 C -0.114 4.114 13 C 0.014 3.986 14 C -0.490 4.490 15 C 0.077 3.923 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.018 4.018 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.108 4.108 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.402 0.598 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.007 0.993 34 H 0.063 0.937 35 H 0.265 0.735 36 H 0.020 0.980 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.131 0.869 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 -5.522 -10.706 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.135 4.135 5 C 0.065 3.935 6 O -0.227 6.227 7 C 0.390 3.610 8 O -0.443 6.443 9 N -0.354 5.354 10 C 0.068 3.932 11 H 0.100 0.900 12 C -0.153 4.153 13 C -0.024 4.024 14 C -0.509 4.509 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.056 4.056 22 C -0.154 4.154 23 C -0.133 4.133 24 C -0.126 4.126 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.236 0.764 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.149 0.851 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.052 -5.389 -10.155 21.401 hybrid contribution 0.320 0.963 -0.285 1.054 sum -17.732 -4.425 -10.440 21.048 Atomic orbital electron populations 1.20787 0.90884 1.02792 1.02514 1.19985 0.96345 0.93098 0.99666 1.20882 0.93159 0.97932 1.00399 1.21352 0.94876 0.97592 0.99642 1.18285 0.79655 0.93566 1.02037 1.84287 1.18886 1.80781 1.38714 1.18531 0.83960 0.77288 0.81186 1.91020 1.64770 1.55028 1.33496 1.45375 1.02474 1.69932 1.17614 1.21218 0.93070 0.95504 0.83405 0.89986 1.21982 0.92795 0.97581 1.02926 1.19346 0.97978 0.95148 0.89952 1.20042 0.90717 0.92746 1.47377 1.24842 0.94780 0.98412 0.94564 1.69832 0.98857 1.35959 1.48048 0.86672 0.77249 0.85636 0.78881 1.20343 1.21639 1.18928 1.19794 0.96334 0.97066 0.92432 1.21953 0.98566 0.93800 1.01125 1.21103 0.94393 0.97162 1.00687 1.20858 0.93023 0.97886 1.00836 0.91002 0.91449 0.91459 0.85400 0.85443 0.76403 0.94268 0.92367 0.97415 0.91867 0.92535 0.96147 0.94453 0.92771 0.94397 0.85116 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.09 -0.91 5.88 -104.60 -0.62 -1.52 16 3 C -0.11 -1.17 9.69 -39.60 -0.38 -1.55 16 4 C -0.12 -1.57 9.40 -39.44 -0.37 -1.94 16 5 C 0.11 1.56 5.25 -39.22 -0.21 1.35 16 6 O -0.31 -4.93 10.09 -24.73 -0.25 -5.18 16 7 C 0.64 11.38 8.49 54.06 0.46 11.84 16 8 O -0.56 -11.69 15.50 -19.28 -0.30 -11.99 16 9 N -0.70 -11.64 5.08 -58.76 -0.30 -11.94 16 10 C 0.17 3.30 2.35 -67.97 -0.16 3.14 16 11 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 12 C -0.11 -2.28 5.40 -26.64 -0.14 -2.43 16 13 C 0.01 0.33 5.96 -27.49 -0.16 0.16 16 14 C -0.49 -12.65 5.51 -98.93 -0.55 -13.19 16 15 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 16 N -0.89 -25.06 12.73 55.43 0.71 -24.35 16 17 Si 0.89 20.84 27.53 -169.99 -4.68 16.16 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.02 6.11 56.52 0.35 -5.67 16 21 C -0.02 -0.43 5.59 -27.49 -0.15 -0.58 16 22 C -0.12 -2.41 5.50 -26.63 -0.15 -2.56 16 23 C -0.11 -1.41 9.99 -39.44 -0.39 -1.81 16 24 C -0.11 -1.10 9.69 -39.61 -0.38 -1.49 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.40 5.60 8.71 -40.82 -0.36 5.25 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.87 4.59 -51.93 -0.24 0.63 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -30.10 337.10 -8.72 -38.82 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.04 Total: 2.42 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.94 Total: -9.02 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.41 Total: -36.29 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.55 Total: -17.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.68 Total: 16.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.10 -8.72 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194474630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.406 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds