Wall clock time and date at job start Tue Mar 31 2020 06:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.94404 * 2 1 4 4 C 1.38144 * 120.05385 * 180.27946 * 3 2 1 5 5 C 1.38721 * 119.94672 * 359.97438 * 4 3 2 6 6 O 1.35929 * 120.05365 * 179.97438 * 5 4 3 7 7 C 1.34684 * 116.99917 * 70.02611 * 6 5 4 8 8 O 1.21509 * 119.99573 * 5.94790 * 7 6 5 9 9 N 1.34779 * 120.00036 * 185.94768 * 7 6 5 10 10 C 1.46496 * 119.99902 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.41288 * 35.14670 * 10 9 7 12 12 C 1.52957 * 109.41170 * 155.00004 * 10 9 7 13 13 C 1.53228 * 109.40525 * 183.70688 * 12 10 9 14 14 C 1.51268 * 108.53864 * 305.37518 * 13 12 10 15 15 C 1.37876 * 120.85308 * 231.37104 * 14 13 12 16 16 N 1.31512 * 119.99687 * 359.97438 * 15 14 13 17 17 Si 1.86795 * 120.00107 * 179.97438 * 15 14 13 18 18 H 1.48499 * 109.47279 * 90.00062 * 17 15 14 19 19 H 1.48504 * 109.47267 * 209.99733 * 17 15 14 20 20 H 1.48503 * 109.47371 * 329.99508 * 17 15 14 21 21 C 1.51264 * 118.29912 * 51.34495 * 14 13 12 22 22 C 1.52961 * 109.41701 * 275.35803 * 10 9 7 23 23 C 1.38720 * 119.88901 * 0.02562 * 5 4 3 24 24 C 1.38147 * 119.94648 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47236 * 269.72558 * 1 2 3 26 26 H 1.08996 * 109.47224 * 29.72607 * 1 2 3 27 27 H 1.09003 * 109.46804 * 149.72719 * 1 2 3 28 28 H 1.07999 * 119.97003 * 0.27984 * 3 2 1 29 29 H 1.08003 * 120.02618 * 180.02562 * 4 3 2 30 30 H 0.96998 * 119.99991 * 0.02562 * 9 7 6 31 31 H 1.09003 * 109.48717 * 303.69064 * 12 10 9 32 32 H 1.08998 * 109.48356 * 63.73114 * 12 10 9 33 33 H 1.08996 * 109.62561 * 65.09020 * 13 12 10 34 34 H 1.08997 * 109.62876 * 185.47115 * 13 12 10 35 35 H 0.97010 * 119.99996 * 179.97438 * 16 15 14 36 36 H 1.09003 * 109.62912 * 68.37105 * 21 14 13 37 37 H 1.09005 * 109.62997 * 188.93978 * 21 14 13 38 38 H 1.08997 * 109.48099 * 296.27528 * 22 10 9 39 39 H 1.08995 * 109.48156 * 56.31527 * 22 10 9 40 40 H 1.08006 * 120.02881 * 180.02562 * 23 5 4 41 41 H 1.08004 * 119.97012 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0058 5 6 4.2734 0.0001 -0.0112 6 8 5.6327 0.0002 -0.0174 7 6 6.2493 0.4081 1.1083 8 8 5.5970 0.6511 2.1043 9 7 7.5897 0.5469 1.1301 10 6 8.2603 0.9912 2.3544 11 1 7.7384 0.5854 3.2211 12 6 9.7061 0.4920 2.3519 13 6 10.3800 0.8771 3.6731 14 6 10.2364 2.3702 3.8689 15 6 11.3339 3.1547 4.1537 16 7 12.5246 2.6064 4.2589 17 14 11.1294 4.9963 4.3902 18 1 10.8624 5.2849 5.8222 19 1 12.3727 5.6906 3.9688 20 1 9.9907 5.4777 3.5675 21 6 8.8581 2.9806 3.7436 22 6 8.2394 2.5193 2.4198 23 6 3.5786 -1.2006 -0.0111 24 6 2.1972 -1.1980 -0.0053 25 1 -0.3633 -0.0049 1.0276 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3633 -0.8876 -0.5181 28 1 1.6558 2.1326 0.0046 29 1 4.1173 2.1369 -0.0054 30 1 8.1103 0.3533 0.3349 31 1 9.7162 -0.5924 2.2413 32 1 10.2465 0.9473 1.5221 33 1 9.8972 0.3518 4.4971 34 1 11.4360 0.6096 3.6371 35 1 13.2968 3.1584 4.4589 36 1 8.2343 2.6501 4.5741 37 1 8.9370 4.0678 3.7515 38 1 8.8145 2.9266 1.5883 39 1 7.2099 2.8717 2.3573 40 1 4.1173 -2.1367 -0.0149 41 1 1.6559 -2.1326 -0.0049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194474630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:56 Heat of formation + Delta-G solvation = -83.273453 kcal Electronic energy + Delta-G solvation = -22491.696830 eV Core-core repulsion = 19142.241340 eV Total energy + Delta-G solvation = -3349.455490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.34904 -40.24980 -39.04552 -37.61527 -35.56162 -33.62627 -32.91973 -32.06090 -31.52907 -29.29171 -27.50557 -24.74264 -23.93484 -23.44227 -23.07756 -21.80632 -21.37426 -19.97826 -18.80597 -18.00577 -17.71045 -16.91982 -16.42614 -16.37422 -15.92857 -15.62743 -15.05242 -14.92521 -14.60709 -14.51343 -14.42153 -14.28434 -14.01084 -13.59949 -13.41431 -12.91713 -12.82946 -12.73723 -12.61606 -12.57822 -12.47401 -12.08215 -11.92844 -11.79599 -11.66479 -11.41533 -10.94114 -10.77210 -10.55907 -10.09556 -10.02636 -9.51901 -8.17547 -6.12186 -0.06175 0.31968 1.23399 1.39621 1.42760 1.50164 1.60137 2.41005 2.65484 3.08015 3.26864 3.81317 3.88373 3.94852 3.97613 4.12256 4.33887 4.36341 4.42134 4.48855 4.68323 4.75227 4.76602 4.87489 4.93565 4.98495 5.01108 5.03511 5.10756 5.18343 5.21999 5.28352 5.31736 5.42892 5.51636 5.54288 5.56602 5.63600 5.74488 5.80222 5.97213 6.32751 6.38508 6.93203 7.26066 7.46197 8.92780 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.003189 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.455921 B = 8778.072414 C = 9311.384034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.113 4.113 4 C -0.134 4.134 5 C 0.064 3.936 6 O -0.306 6.306 7 C 0.640 3.360 8 O -0.591 6.591 9 N -0.685 5.685 10 C 0.182 3.818 11 H 0.064 0.936 12 C -0.101 4.101 13 C 0.009 3.991 14 C -0.500 4.500 15 C 0.027 3.973 16 N -0.927 5.927 17 Si 0.937 3.063 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.251 1.251 21 C -0.019 4.019 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.118 0.882 30 H 0.418 0.582 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.000 1.000 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.016 0.984 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.141 0.859 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.494 -5.781 -12.007 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.153 4.153 5 C 0.022 3.978 6 O -0.218 6.218 7 C 0.394 3.606 8 O -0.480 6.480 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.082 0.918 12 C -0.139 4.139 13 C -0.029 4.029 14 C -0.520 4.520 15 C -0.172 4.172 16 N -0.567 5.567 17 Si 0.764 3.236 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.176 1.176 21 C -0.058 4.058 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.125 4.125 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.168 0.832 29 H 0.137 0.863 30 H 0.255 0.745 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.018 0.982 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.159 0.841 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.662 -5.658 -11.501 24.315 hybrid contribution 0.983 0.961 0.114 1.379 sum -19.679 -4.697 -11.386 23.216 Atomic orbital electron populations 1.20873 0.88216 1.04347 1.03412 1.20457 0.98275 0.92511 0.97365 1.21211 0.92319 0.99627 0.99881 1.21464 0.96137 0.97026 1.00674 1.18709 0.79054 0.94977 1.05048 1.84308 1.20016 1.80263 1.37218 1.18598 0.83932 0.76723 0.81348 1.90989 1.65591 1.56481 1.34970 1.44992 1.02435 1.69593 1.17338 1.20816 0.92679 0.94530 0.83983 0.91814 1.21745 0.92551 0.99167 1.00469 1.19304 0.96838 0.94683 0.92082 1.20577 0.91667 0.93670 1.46038 1.25548 0.94680 1.02120 0.94849 1.69950 0.99553 1.37223 1.49931 0.85861 0.77466 0.81441 0.78865 1.20283 1.21662 1.17551 1.19787 0.95164 0.97075 0.93729 1.21836 0.98458 0.94748 0.99744 1.21369 0.95513 0.96801 1.00443 1.21283 0.92297 0.99481 0.99477 0.90227 0.90245 0.89692 0.83244 0.86348 0.74538 0.91859 0.91947 0.98160 0.94413 0.92694 0.96591 0.94305 0.92237 0.94130 0.84073 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.24 0.71 -0.39 16 2 C -0.09 -1.48 5.88 -19.85 -0.12 -1.60 16 3 C -0.11 -2.31 9.69 22.25 0.22 -2.09 16 4 C -0.13 -3.58 9.40 22.36 0.21 -3.37 16 5 C 0.06 1.84 5.25 22.50 0.12 1.95 16 6 O -0.31 -9.48 10.09 0.29 0.00 -9.48 16 7 C 0.64 22.52 8.49 129.79 1.10 23.62 16 8 O -0.59 -24.83 15.50 19.81 0.31 -24.52 16 9 N -0.69 -22.08 5.08 -570.20 -2.90 -24.98 16 10 C 0.18 6.96 2.35 44.96 0.11 7.07 16 11 H 0.06 2.71 7.58 -2.38 -0.02 2.69 16 12 C -0.10 -3.93 5.40 30.66 0.17 -3.77 16 13 C 0.01 0.44 5.96 30.10 0.18 0.62 16 14 C -0.50 -25.94 5.51 -16.17 -0.09 -26.03 16 15 C 0.03 1.45 5.46 84.65 0.46 1.91 16 16 N -0.93 -53.27 12.73 21.45 0.27 -52.99 16 17 Si 0.94 42.73 27.53 68.60 1.89 44.62 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.25 -10.81 6.11 99.48 0.61 -10.20 16 21 C -0.02 -0.90 5.59 30.10 0.17 -0.74 16 22 C -0.11 -4.45 5.50 30.66 0.17 -4.28 16 23 C -0.12 -2.85 9.99 22.36 0.22 -2.63 16 24 C -0.11 -1.92 9.69 22.25 0.22 -1.70 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.42 10.89 8.71 -92.71 -0.81 10.08 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.04 2.01 7.08 -2.39 -0.02 2.00 16 35 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.04 1.76 4.59 -2.38 -0.01 1.75 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -65.52 337.10 3.55 -61.97 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.13 Total: 16.80 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 3.84 Total: -11.42 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -2.62 Total: -77.97 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: 0.31 Total: -34.00 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.89 Total: 44.62 kcal Total: -65.52 3.55 -61.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194474630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.301 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds