Wall clock time and date at job start Tue Mar 31 2020 06:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.94341 * 2 1 4 4 C 1.38146 * 120.05278 * 179.97438 * 3 2 1 5 5 C 1.38724 * 119.94595 * 0.02562 * 4 3 2 6 6 O 1.35934 * 120.05601 * 179.97438 * 5 4 3 7 7 C 1.34678 * 117.00316 * 77.06546 * 6 5 4 8 8 O 1.21513 * 119.99830 * 355.09289 * 7 6 5 9 9 N 1.34775 * 120.00104 * 175.09236 * 7 6 5 10 10 C 1.46506 * 119.99850 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.41671 * 35.13701 * 10 9 7 12 12 C 1.52955 * 109.41175 * 155.00175 * 10 9 7 13 13 C 1.53234 * 109.40222 * 183.70308 * 12 10 9 14 14 C 1.51271 * 108.53441 * 305.36579 * 13 12 10 15 15 C 1.37870 * 120.85123 * 231.32740 * 14 13 12 16 16 N 1.31515 * 120.00009 * 0.02562 * 15 14 13 17 17 Si 1.86797 * 120.00044 * 180.02562 * 15 14 13 18 18 H 1.48496 * 109.47420 * 89.99792 * 17 15 14 19 19 H 1.48501 * 109.47453 * 209.99792 * 17 15 14 20 20 H 1.48503 * 109.47222 * 329.99958 * 17 15 14 21 21 C 1.51276 * 118.29730 * 51.35267 * 14 13 12 22 22 C 1.52967 * 109.40892 * 275.34972 * 10 9 7 23 23 C 1.38725 * 119.88740 * 0.25275 * 5 4 3 24 24 C 1.38144 * 119.94633 * 359.49098 * 23 5 4 25 25 H 1.09000 * 109.47311 * 89.99771 * 1 2 3 26 26 H 1.09001 * 109.46819 * 209.99940 * 1 2 3 27 27 H 1.09002 * 109.46897 * 329.99877 * 1 2 3 28 28 H 1.07997 * 119.97478 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02564 * 180.02562 * 4 3 2 30 30 H 0.96999 * 119.99742 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.48569 * 63.72027 * 12 10 9 32 32 H 1.09003 * 109.49467 * 303.68852 * 12 10 9 33 33 H 1.08996 * 109.62492 * 65.08133 * 13 12 10 34 34 H 1.09005 * 109.62476 * 185.65866 * 13 12 10 35 35 H 0.97003 * 120.00202 * 180.02562 * 16 15 14 36 36 H 1.08993 * 109.62325 * 188.93231 * 21 14 13 37 37 H 1.08996 * 109.62382 * 68.36492 * 21 14 13 38 38 H 1.08993 * 109.48139 * 296.27471 * 22 10 9 39 39 H 1.08998 * 109.47979 * 56.30457 * 22 10 9 40 40 H 1.08002 * 120.02188 * 179.72864 * 23 5 4 41 41 H 1.07995 * 119.96965 * 180.27495 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2008 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6328 0.0000 0.0005 7 6 6.2443 0.2686 1.1700 8 8 5.5859 0.5841 2.1414 9 7 7.5864 0.1875 1.2630 10 6 8.2514 0.4791 2.5354 11 1 7.6246 0.1369 3.3587 12 6 9.5965 -0.2475 2.5842 13 6 10.2499 -0.0177 3.9510 14 6 10.3372 1.4722 4.1978 15 6 11.5287 2.0591 4.5676 16 7 12.6086 1.3219 4.7095 17 14 11.6093 3.9011 4.8670 18 1 11.3133 4.1840 6.2944 19 1 12.9690 4.3975 4.5357 20 1 10.6094 4.5863 4.0090 21 6 9.0834 2.3017 4.0291 22 6 8.4723 1.9877 2.6595 23 6 3.5786 -1.2006 -0.0053 24 6 2.1972 -1.1980 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6559 2.1326 -0.0004 29 1 4.1173 2.1368 0.0010 30 1 8.1118 -0.0647 0.4876 31 1 10.2475 0.1394 1.8003 32 1 9.4388 -1.3153 2.4316 33 1 9.6447 -0.4828 4.7290 34 1 11.2511 -0.4486 3.9553 35 1 13.4468 1.7347 4.9700 36 1 9.3351 3.3608 4.0835 37 1 8.3703 2.0512 4.8144 38 1 9.1499 2.3217 1.8738 39 1 7.5176 2.5042 2.5601 40 1 4.1173 -2.1367 -0.0098 41 1 1.6559 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194474631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:59 Heat of formation + Delta-G solvation = -66.165241 kcal Electronic energy + Delta-G solvation = -22471.933530 eV Core-core repulsion = 19123.219908 eV Total energy + Delta-G solvation = -3348.713622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10424 -39.12442 -37.66169 -36.12473 -33.87942 -32.35385 -31.51339 -31.19275 -29.72871 -27.62811 -26.55403 -23.28630 -23.00838 -21.81299 -21.50574 -20.63162 -19.70586 -18.56415 -17.55940 -16.59699 -16.10399 -15.76159 -15.25778 -14.76975 -14.45897 -14.42179 -14.01942 -13.67219 -13.61576 -13.29874 -12.87030 -12.66617 -12.38756 -12.17577 -12.11408 -11.85450 -11.68517 -11.60625 -11.07451 -10.89924 -10.76661 -10.69114 -10.48756 -10.15769 -10.02888 -9.59295 -9.14960 -9.09959 -8.97373 -8.63943 -8.53702 -8.40222 -6.13695 -4.04950 0.90253 1.19477 2.46590 3.00356 3.26509 3.34780 3.35815 3.58829 4.36080 4.44346 4.62019 4.63820 4.80885 5.07562 5.13920 5.16769 5.31368 5.39609 5.49083 5.61062 5.72280 5.80077 5.81515 6.06678 6.11475 6.25072 6.31593 6.35834 6.42279 6.45961 6.64719 6.68218 6.83596 6.90053 6.94238 7.05719 7.17321 7.39671 7.60792 7.65070 7.68874 7.82052 8.33659 8.60990 8.92106 9.50978 10.95638 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.003136 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.813920 B = 8925.609238 C = 9375.870995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.107 4.107 4 C -0.111 4.111 5 C 0.105 3.895 6 O -0.314 6.314 7 C 0.638 3.362 8 O -0.557 6.557 9 N -0.697 5.697 10 C 0.169 3.831 11 H 0.082 0.918 12 C -0.114 4.114 13 C 0.013 3.987 14 C -0.490 4.490 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.018 4.018 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.109 4.109 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.402 0.598 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.008 0.992 34 H 0.063 0.937 35 H 0.265 0.735 36 H 0.037 0.963 37 H 0.020 0.980 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.130 0.870 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.073 -3.416 -11.492 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.130 4.130 5 C 0.062 3.938 6 O -0.228 6.228 7 C 0.390 3.610 8 O -0.444 6.444 9 N -0.354 5.354 10 C 0.068 3.932 11 H 0.100 0.900 12 C -0.153 4.153 13 C -0.025 4.025 14 C -0.509 4.509 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.056 4.056 22 C -0.155 4.155 23 C -0.134 4.134 24 C -0.127 4.127 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.236 0.764 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.148 0.852 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.231 -3.243 -10.951 21.513 hybrid contribution 0.478 0.939 -0.253 1.083 sum -17.753 -2.304 -11.204 21.118 Atomic orbital electron populations 1.20791 0.90877 1.02989 1.02338 1.19994 0.96351 0.93103 0.99477 1.20894 0.93174 0.97924 1.00556 1.21346 0.94746 0.97659 0.99200 1.18269 0.79699 0.93471 1.02317 1.84290 1.18939 1.84678 1.34844 1.18546 0.83963 0.77519 0.80924 1.91019 1.64518 1.52368 1.36479 1.45376 1.02220 1.71617 1.16190 1.21218 0.93504 0.96757 0.81701 0.89998 1.21981 0.93818 0.96564 1.02899 1.19356 0.97552 0.96029 0.89524 1.20049 0.92612 0.92608 1.45605 1.24839 0.95115 0.97987 0.94660 1.69829 1.00260 1.35723 1.46905 0.86672 0.76887 0.85908 0.78971 1.20350 1.21640 1.18924 1.19795 0.96459 0.97287 0.92107 1.21955 0.98679 0.93826 1.01013 1.21179 0.94494 0.97261 1.00479 1.20862 0.93041 0.97899 1.00889 0.91066 0.91412 0.91398 0.85386 0.85373 0.76415 0.92369 0.94278 0.97390 0.91832 0.92536 0.94456 0.96148 0.92774 0.94377 0.85160 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.09 -0.89 5.88 -104.60 -0.62 -1.50 16 3 C -0.11 -1.17 9.69 -39.60 -0.38 -1.56 16 4 C -0.11 -1.48 9.58 -39.44 -0.38 -1.86 16 5 C 0.10 1.52 5.14 -39.22 -0.20 1.32 16 6 O -0.31 -4.94 10.08 -24.73 -0.25 -5.19 16 7 C 0.64 11.40 8.58 54.05 0.46 11.86 16 8 O -0.56 -11.72 15.54 -19.28 -0.30 -12.02 16 9 N -0.70 -11.67 5.08 -58.76 -0.30 -11.97 16 10 C 0.17 3.31 2.35 -67.97 -0.16 3.15 16 11 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 12 C -0.11 -2.28 5.40 -26.63 -0.14 -2.42 16 13 C 0.01 0.32 5.97 -27.48 -0.16 0.16 16 14 C -0.49 -12.66 5.51 -98.92 -0.55 -13.21 16 15 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 16 N -0.89 -25.08 12.73 55.43 0.71 -24.38 16 17 Si 0.89 20.88 27.53 -169.99 -4.68 16.20 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -6.03 6.10 56.52 0.35 -5.69 16 21 C -0.02 -0.43 5.59 -27.48 -0.15 -0.59 16 22 C -0.12 -2.43 5.50 -26.63 -0.15 -2.58 16 23 C -0.12 -1.42 9.99 -39.44 -0.39 -1.82 16 24 C -0.11 -1.12 9.69 -39.61 -0.38 -1.50 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.40 5.61 8.71 -40.82 -0.36 5.25 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 1.66 7.07 -51.93 -0.37 1.30 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.04 0.87 4.59 -51.93 -0.24 0.63 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -30.16 337.29 -8.72 -38.88 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.04 Total: 2.37 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.94 Total: -8.98 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.41 Total: -36.34 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.55 Total: -17.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.68 Total: 16.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.16 -8.72 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194474631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.289 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds