Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38261 * 119.94400 * 2 1 4 4 C 1.38147 * 120.05457 * 180.02562 * 3 2 1 5 5 C 1.38725 * 119.94487 * 359.97438 * 4 3 2 6 6 O 1.35938 * 120.05517 * 179.97438 * 5 4 3 7 7 C 1.34681 * 116.99700 * 256.54148 * 6 5 4 8 8 O 1.21513 * 119.99832 * 3.12384 * 7 6 5 9 9 N 1.34780 * 119.99604 * 183.12748 * 7 6 5 10 10 C 1.46500 * 119.99523 * 185.05542 * 9 7 6 11 11 C 1.50700 * 110.67347 * 300.66041 * 10 9 7 12 12 H 1.07995 * 120.00006 * 126.24894 * 11 10 9 13 13 C 1.37880 * 119.99908 * 306.24273 * 11 10 9 14 14 N 1.31514 * 119.99730 * 4.59624 * 13 11 10 15 15 Si 1.86795 * 119.99868 * 184.59688 * 13 11 10 16 16 H 1.48492 * 109.47342 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47212 * 120.00237 * 15 13 11 18 18 H 1.48505 * 109.47154 * 239.99810 * 15 13 11 19 19 C 1.54895 * 110.75410 * 177.22190 * 10 9 7 20 20 C 1.54268 * 104.19305 * 279.62918 * 19 10 9 21 21 C 1.53869 * 106.60208 * 336.38751 * 20 19 10 22 22 C 1.54268 * 106.59778 * 0.02562 * 21 20 19 23 23 C 1.38720 * 119.88751 * 0.24714 * 5 4 3 24 24 C 1.38143 * 119.94669 * 359.50074 * 23 5 4 25 25 H 1.08999 * 109.46467 * 90.00327 * 1 2 3 26 26 H 1.09003 * 109.46908 * 210.00264 * 1 2 3 27 27 H 1.09001 * 109.47317 * 330.00428 * 1 2 3 28 28 H 1.08008 * 119.97555 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.02707 * 179.97438 * 4 3 2 30 30 H 0.96992 * 120.00059 * 5.05656 * 9 7 6 31 31 H 0.97001 * 119.99958 * 184.99862 * 14 13 11 32 32 H 1.08994 * 110.48653 * 160.95369 * 19 10 9 33 33 H 1.08996 * 110.48330 * 38.30220 * 19 10 9 34 34 H 1.09000 * 110.02899 * 217.10292 * 20 19 10 35 35 H 1.08996 * 110.03410 * 95.67399 * 20 19 10 36 36 H 1.09004 * 110.03248 * 119.28317 * 21 20 19 37 37 H 1.09002 * 110.03455 * 240.66910 * 21 20 19 38 38 H 1.08999 * 110.48605 * 142.28628 * 22 21 20 39 39 H 1.09003 * 110.48604 * 264.93052 * 22 21 20 40 40 H 1.07998 * 120.02548 * 179.72269 * 23 5 4 41 41 H 1.08000 * 119.97391 * 180.22351 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2007 -0.0005 5 6 4.2735 0.0000 -0.0005 6 8 5.6328 0.0000 -0.0016 7 6 6.2433 -0.2798 -1.1690 8 8 5.5820 -0.4615 -2.1721 9 7 7.5877 -0.3584 -1.2246 10 6 8.2574 -0.5525 -2.5130 11 6 7.7981 -1.8318 -3.1639 12 1 7.4117 -1.8161 -4.1722 13 6 7.8714 -3.0222 -2.4721 14 7 8.2566 -3.0293 -1.2146 15 14 7.4237 -4.6248 -3.3210 16 1 7.0260 -4.3472 -4.7245 17 1 8.5969 -5.5352 -3.3102 18 1 6.2930 -5.2661 -2.6031 19 6 9.7965 -0.5424 -2.3386 20 6 10.1586 0.9553 -2.2625 21 6 9.0237 1.7184 -2.9675 22 6 8.0110 0.6580 -3.4469 23 6 3.5787 -1.2007 -0.0052 24 6 2.1973 -1.1980 0.0006 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6559 2.1327 -0.0004 29 1 4.1173 2.1368 -0.0010 30 1 8.1117 -0.2864 -0.4115 31 1 8.3781 -3.8717 -0.7494 32 1 10.2806 -1.0087 -3.1965 33 1 10.0792 -1.0505 -1.4168 34 1 11.1043 1.1371 -2.7731 35 1 10.2295 1.2698 -1.2213 36 1 8.5437 2.4033 -2.2684 37 1 9.4187 2.2714 -3.8198 38 1 6.9912 1.0259 -3.3342 39 1 8.2067 0.3851 -4.4840 40 1 4.1173 -2.1367 -0.0097 41 1 1.6559 -2.1326 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194487609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -57.598305 kcal Electronic energy + Delta-G solvation = -23599.170824 eV Core-core repulsion = 20250.828692 eV Total energy + Delta-G solvation = -3348.342132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33536 -38.65058 -37.52838 -35.33492 -32.83268 -32.11457 -31.44383 -30.76424 -27.89605 -27.69954 -26.28062 -24.05498 -22.63822 -22.24970 -20.41125 -19.57409 -18.81989 -17.80542 -16.94632 -16.39777 -15.89712 -15.20451 -14.78455 -14.65908 -14.17829 -13.94043 -13.83775 -13.67797 -13.25083 -13.10109 -12.89655 -12.34331 -12.11171 -11.82830 -11.68151 -11.30394 -11.18887 -11.08792 -10.76370 -10.62522 -10.55840 -10.40056 -10.13544 -10.06595 -9.64072 -9.55210 -9.31619 -9.19764 -8.72918 -8.54360 -8.15488 -7.57715 -6.05250 -4.09372 1.39971 1.61278 3.23095 3.32844 3.38016 3.43644 4.09916 4.11256 4.42831 4.97432 5.00959 5.08419 5.21779 5.40986 5.44431 5.57300 5.59331 5.60923 5.65243 5.68318 5.84266 5.88981 6.16148 6.22377 6.30305 6.38950 6.49353 6.57021 6.58484 6.71566 6.74063 6.76213 6.77608 6.95832 7.01261 7.05211 7.16759 7.41912 7.57925 7.86823 8.04139 8.22042 8.83484 8.94414 9.55541 9.73346 10.99466 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.005755 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.585471 B = 4863.942982 C = 6073.938749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.123 4.123 5 C 0.125 3.875 6 O -0.330 6.330 7 C 0.641 3.359 8 O -0.554 6.554 9 N -0.650 5.650 10 C 0.310 3.690 11 C -0.494 4.494 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.879 5.879 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.106 4.106 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.115 4.115 24 C -0.107 4.107 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.385 0.615 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.128 0.872 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 7.287 3.977 10.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.082 3.918 6 O -0.244 6.244 7 C 0.393 3.607 8 O -0.441 6.441 9 N -0.304 5.304 10 C 0.228 3.772 11 C -0.533 4.533 12 H 0.080 0.920 13 C -0.130 4.130 14 N -0.517 5.517 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.134 4.134 24 C -0.125 4.125 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.218 0.782 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.783 7.116 3.605 10.471 hybrid contribution 0.064 -1.065 0.053 1.069 sum -6.719 6.051 3.658 9.754 Atomic orbital electron populations 1.20742 0.91289 1.02410 1.02175 1.19875 0.95974 0.93175 1.01016 1.20772 0.93138 0.97526 1.01424 1.21135 0.94312 0.97292 1.01391 1.18272 0.80828 0.92963 0.99721 1.84281 1.17898 1.84779 1.37489 1.18449 0.84265 0.77710 0.80289 1.90925 1.64273 1.54971 1.33937 1.45250 1.00834 1.72771 1.11512 1.18842 0.87923 0.92062 0.78329 1.21261 1.41450 0.90566 1.00038 0.91968 1.24929 0.94567 0.99076 0.94439 1.69973 1.46654 1.26200 1.08894 0.86557 0.77938 0.83576 0.80085 1.19664 1.21082 1.21247 1.22475 0.96857 0.92869 1.02287 1.22253 0.97460 0.97680 0.99236 1.22141 0.96919 0.98076 0.98913 1.22736 0.98037 0.96020 0.99874 1.21417 0.94583 0.98122 0.99234 1.20839 0.93303 0.97618 1.00775 0.91330 0.91727 0.91758 0.85809 0.85589 0.78225 0.93173 0.91268 0.91159 0.93155 0.93059 0.93255 0.93259 0.92117 0.91711 0.85432 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.10 -1.38 5.88 -104.60 -0.62 -2.00 16 3 C -0.11 -1.55 9.69 -39.61 -0.38 -1.93 16 4 C -0.12 -2.04 9.99 -39.43 -0.39 -2.43 16 5 C 0.13 2.47 5.09 -39.22 -0.20 2.27 16 6 O -0.33 -7.24 10.08 -24.75 -0.25 -7.49 16 7 C 0.64 15.58 7.92 54.06 0.43 16.01 16 8 O -0.55 -15.03 13.80 -19.28 -0.27 -15.30 16 9 N -0.65 -15.02 4.01 -51.68 -0.21 -15.23 16 10 C 0.31 7.23 0.27 -130.99 -0.04 7.19 16 11 C -0.49 -13.28 6.71 -34.44 -0.23 -13.51 16 12 H 0.06 1.75 7.76 -52.49 -0.41 1.34 16 13 C 0.07 1.98 5.31 -17.82 -0.09 1.88 16 14 N -0.88 -23.63 12.01 55.43 0.67 -22.97 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 C -0.11 -2.20 5.47 -25.07 -0.14 -2.34 16 20 C -0.13 -2.20 6.78 -25.62 -0.17 -2.38 16 21 C -0.12 -2.15 6.78 -25.62 -0.17 -2.33 16 22 C -0.13 -2.72 5.67 -25.08 -0.14 -2.87 16 23 C -0.11 -2.17 9.68 -39.44 -0.38 -2.55 16 24 C -0.11 -1.66 9.69 -39.61 -0.38 -2.04 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.39 8.39 8.61 -40.82 -0.35 8.04 16 31 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 32 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 33 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.39 6.68 -51.93 -0.35 1.05 16 39 H 0.06 1.36 8.02 -51.93 -0.42 0.95 16 40 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 41 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -30.00 340.16 -8.64 -38.64 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.13 Total: 8.38 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.56 Total: -7.74 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.46 Total: -38.20 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.52 Total: -22.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.00 -8.64 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194487609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.962 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds