Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38406 * 119.82251 * 2 1 4 4 C 1.37891 * 120.16845 * 179.97438 * 3 2 1 5 5 C 1.39847 * 119.82390 * 359.97438 * 4 3 2 6 6 C 1.47172 * 120.16894 * 179.97438 * 5 4 3 7 7 O 1.21251 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99771 * 180.02562 * 6 5 4 9 9 O 1.42902 * 109.46918 * 179.97438 * 8 6 5 10 10 C 1.42907 * 113.99938 * 180.02562 * 9 8 6 11 11 H 1.08995 * 110.64201 * 26.85726 * 10 9 8 12 12 C 1.55151 * 110.71895 * 149.99886 * 10 9 8 13 13 C 1.54914 * 101.58023 * 153.86196 * 12 10 9 14 14 N 1.47420 * 104.83159 * 322.99181 * 13 12 10 15 15 C 1.36945 * 125.64792 * 204.08975 * 14 13 12 16 16 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47020 * 108.70626 * 24.35323 * 14 13 12 24 24 C 1.39848 * 119.65875 * 0.25457 * 5 4 3 25 25 C 1.37881 * 119.82724 * 359.51066 * 24 5 4 26 26 H 1.09007 * 109.46899 * 90.00193 * 1 2 3 27 27 H 1.08994 * 109.47606 * 210.00049 * 1 2 3 28 28 H 1.08999 * 109.47547 * 330.00931 * 1 2 3 29 29 H 1.07994 * 119.91877 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.08277 * 180.02562 * 4 3 2 31 31 H 1.09008 * 109.47348 * 59.99782 * 8 6 5 32 32 H 1.08997 * 109.47561 * 299.99370 * 8 6 5 33 33 H 1.09002 * 111.00697 * 35.79090 * 12 10 9 34 34 H 1.08994 * 111.00548 * 271.93558 * 12 10 9 35 35 H 1.08999 * 110.37083 * 204.15142 * 13 12 10 36 36 H 1.08998 * 110.45606 * 81.87777 * 13 12 10 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.88406 * 118.12749 * 23 14 13 39 39 H 1.09001 * 109.88743 * 239.29401 * 23 14 13 40 40 H 1.08009 * 120.08785 * 179.72487 * 24 5 4 41 41 H 1.08000 * 119.91898 * 180.25069 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2008 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2770 0.0001 0.0016 6 6 5.7487 0.0001 0.0016 7 8 6.3550 1.0502 0.0002 8 6 6.5022 -1.3050 0.0022 9 8 7.9072 -1.0439 0.0015 10 6 8.7172 -2.2212 0.0014 11 1 8.1851 -3.0537 -0.4590 12 6 10.0633 -1.9612 -0.7249 13 6 10.9873 -3.0059 -0.0505 14 7 10.5562 -3.0370 1.3589 15 6 11.3269 -3.4291 2.4208 16 1 10.9165 -3.4164 3.4196 17 6 12.6355 -3.8429 2.2133 18 7 13.1358 -3.8580 0.9959 19 14 13.6870 -4.3771 3.6619 20 1 15.0345 -4.7700 3.1772 21 1 13.8145 -3.2519 4.6225 22 1 13.0476 -5.5346 4.3374 23 6 9.1597 -2.5835 1.4349 24 6 3.5742 -1.2090 -0.0032 25 6 2.1954 -1.2007 0.0011 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6511 2.1336 0.0004 30 1 4.1099 2.1469 0.0010 31 1 6.2389 -1.8771 -0.8876 32 1 6.2390 -1.8762 0.8925 33 1 10.4184 -0.9476 -0.5387 34 1 9.9734 -2.1518 -1.7943 35 1 12.0291 -2.6931 -0.1217 36 1 10.8539 -3.9853 -0.5098 37 1 14.0504 -4.1468 0.8510 38 1 8.5313 -3.3826 1.8281 39 1 9.0897 -1.7046 2.0758 40 1 4.1100 -2.1468 -0.0069 41 1 1.6511 -2.1335 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204831647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -29.554526 kcal Electronic energy + Delta-G solvation = -21879.713987 eV Core-core repulsion = 18532.587925 eV Total energy + Delta-G solvation = -3347.126063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28443 -38.79182 -37.93986 -35.73359 -33.34860 -32.20347 -31.44140 -29.53474 -28.87251 -27.31985 -26.47967 -24.28309 -22.98004 -22.55169 -20.37650 -20.13196 -19.90273 -17.37718 -16.86218 -16.61688 -15.87984 -15.61041 -15.56743 -14.82140 -14.66714 -14.32840 -14.19163 -14.05087 -13.85041 -13.52881 -13.25974 -12.68656 -12.48383 -12.37151 -12.23401 -11.97445 -11.70221 -11.45590 -11.34655 -11.13850 -10.94478 -10.74469 -10.36664 -10.12568 -9.76790 -9.70415 -9.50537 -9.35148 -9.18887 -9.04523 -8.63197 -6.82260 -5.63399 -3.05442 0.38680 1.03455 2.22120 3.34819 3.42829 3.46254 3.46677 3.48388 4.34282 4.38932 4.45856 4.53396 4.61488 4.80673 4.98100 5.09477 5.15093 5.16406 5.20331 5.27614 5.36308 5.39779 5.50606 5.52538 5.63791 5.65639 5.74536 5.86354 5.94174 6.06314 6.15485 6.35522 6.52135 6.53996 6.61093 6.64815 6.72868 7.39453 7.50688 7.61501 7.64028 7.86967 8.37681 9.23460 9.84162 10.48514 11.40709 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035963 B = 0.002619 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.396922 B =10687.623031 C =10932.561276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.057 4.057 5 C -0.167 4.167 6 C 0.394 3.606 7 O -0.427 6.427 8 C 0.016 3.984 9 O -0.358 6.358 10 C 0.073 3.927 11 H 0.065 0.935 12 C -0.138 4.138 13 C 0.152 3.848 14 N -0.602 5.602 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.924 5.924 19 Si 0.917 3.083 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.117 3.883 24 C -0.070 4.070 25 C -0.133 4.133 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.014 0.986 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.035 0.965 40 H 0.134 0.866 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.169 5.603 -4.927 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.059 4.059 3 C -0.152 4.152 4 C -0.075 4.075 5 C -0.168 4.168 6 C 0.269 3.731 7 O -0.300 6.300 8 C -0.061 4.061 9 O -0.277 6.277 10 C 0.015 3.985 11 H 0.083 0.917 12 C -0.177 4.177 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.215 1.215 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.009 4.009 24 C -0.088 4.088 25 C -0.151 4.151 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.152 0.848 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.537 6.277 -4.882 25.794 hybrid contribution 0.288 -0.751 0.760 1.106 sum -24.250 5.526 -4.122 25.211 Atomic orbital electron populations 1.20884 0.90844 1.03199 1.02711 1.20226 0.96412 0.93219 0.96018 1.21037 0.93879 0.97884 1.02378 1.21420 0.94031 0.97891 0.94145 1.20425 0.94388 0.94549 1.07450 1.22356 0.87887 0.90438 0.72441 1.90547 1.70905 1.34463 1.34070 1.22729 0.84661 0.96269 1.02461 1.88070 1.13343 1.31215 1.95057 1.23354 0.91767 0.86054 0.97316 0.91672 1.23171 0.94017 1.02277 0.98246 1.21965 0.99611 0.93285 0.82381 1.44379 1.07222 1.77371 1.03927 1.19045 0.93035 1.36217 0.86749 0.90490 1.24801 0.97177 1.01841 0.96908 1.69770 1.15210 1.53732 1.18525 0.86118 0.79530 0.78396 0.81248 1.21538 1.21110 1.21230 1.21688 0.88023 0.96941 0.94261 1.21492 0.94415 0.97361 0.95546 1.21032 0.93985 0.97869 1.02233 0.90687 0.91148 0.91210 0.85379 0.84729 0.90079 0.89884 0.90961 0.91934 0.87127 0.96803 0.93624 0.96124 0.94750 0.84844 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 36.01 0.36 -0.20 16 2 C -0.06 -0.43 5.89 -104.50 -0.62 -1.04 16 3 C -0.13 -1.08 9.68 -39.65 -0.38 -1.47 16 4 C -0.06 -0.58 9.60 -39.11 -0.38 -0.96 16 5 C -0.17 -1.84 5.87 -105.07 -0.62 -2.45 16 6 C 0.39 5.46 7.19 -30.68 -0.22 5.24 16 7 O -0.43 -7.55 16.49 -14.33 -0.24 -7.79 16 8 C 0.02 0.22 4.87 36.01 0.18 0.39 16 9 O -0.36 -6.57 9.61 -55.14 -0.53 -7.10 16 10 C 0.07 1.38 3.44 -24.89 -0.09 1.30 16 11 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 12 C -0.14 -2.85 6.81 -24.58 -0.17 -3.02 16 13 C 0.15 3.82 5.89 -2.53 -0.01 3.81 16 14 N -0.60 -16.11 3.39 -170.07 -0.58 -16.69 16 15 C -0.22 -6.38 10.27 -15.06 -0.15 -6.54 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -27.36 10.09 55.49 0.56 -26.80 16 19 Si 0.92 22.43 29.55 -169.99 -5.02 17.40 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.12 2.61 7.03 -3.06 -0.02 2.59 16 24 C -0.07 -0.60 9.47 -39.11 -0.37 -0.97 16 25 C -0.13 -0.99 9.68 -39.65 -0.38 -1.37 16 26 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 27 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.13 1.38 7.65 -52.49 -0.40 0.98 16 31 H 0.08 0.86 8.05 -51.92 -0.42 0.44 16 32 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.11 3.10 5.87 -51.93 -0.30 2.79 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.13 0.89 7.05 -52.48 -0.37 0.52 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -33.98 343.35 -9.69 -43.67 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.08 Total: -2.73 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.97 Total: -5.14 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.02 Total: -43.49 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.77 Total: -14.89 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.98 -9.69 -43.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204831647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.111 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds