Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38406 * 119.82251 * 2 1 4 4 C 1.37891 * 120.16845 * 179.97438 * 3 2 1 5 5 C 1.39847 * 119.82390 * 359.97438 * 4 3 2 6 6 C 1.47172 * 120.16894 * 179.97438 * 5 4 3 7 7 O 1.21251 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99771 * 180.02562 * 6 5 4 9 9 O 1.42902 * 109.46918 * 179.97438 * 8 6 5 10 10 C 1.42907 * 113.99938 * 180.02562 * 9 8 6 11 11 H 1.08995 * 110.64201 * 26.85726 * 10 9 8 12 12 C 1.55151 * 110.71895 * 149.99886 * 10 9 8 13 13 C 1.54914 * 101.58023 * 153.86196 * 12 10 9 14 14 N 1.47420 * 104.83159 * 322.99181 * 13 12 10 15 15 C 1.36945 * 125.64792 * 204.08975 * 14 13 12 16 16 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47020 * 108.70626 * 24.35323 * 14 13 12 24 24 C 1.39848 * 119.65875 * 0.25457 * 5 4 3 25 25 C 1.37881 * 119.82724 * 359.51066 * 24 5 4 26 26 H 1.09007 * 109.46899 * 90.00193 * 1 2 3 27 27 H 1.08994 * 109.47606 * 210.00049 * 1 2 3 28 28 H 1.08999 * 109.47547 * 330.00931 * 1 2 3 29 29 H 1.07994 * 119.91877 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.08277 * 180.02562 * 4 3 2 31 31 H 1.09008 * 109.47348 * 59.99782 * 8 6 5 32 32 H 1.08997 * 109.47561 * 299.99370 * 8 6 5 33 33 H 1.09002 * 111.00697 * 35.79090 * 12 10 9 34 34 H 1.08994 * 111.00548 * 271.93558 * 12 10 9 35 35 H 1.08999 * 110.37083 * 204.15142 * 13 12 10 36 36 H 1.08998 * 110.45606 * 81.87777 * 13 12 10 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.88406 * 118.12749 * 23 14 13 39 39 H 1.09001 * 109.88743 * 239.29401 * 23 14 13 40 40 H 1.08009 * 120.08785 * 179.72487 * 24 5 4 41 41 H 1.08000 * 119.91898 * 180.25069 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2008 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2770 0.0001 0.0016 6 6 5.7487 0.0001 0.0016 7 8 6.3550 1.0502 0.0002 8 6 6.5022 -1.3050 0.0022 9 8 7.9072 -1.0439 0.0015 10 6 8.7172 -2.2212 0.0014 11 1 8.1851 -3.0537 -0.4590 12 6 10.0633 -1.9612 -0.7249 13 6 10.9873 -3.0059 -0.0505 14 7 10.5562 -3.0370 1.3589 15 6 11.3269 -3.4291 2.4208 16 1 10.9165 -3.4164 3.4196 17 6 12.6355 -3.8429 2.2133 18 7 13.1358 -3.8580 0.9959 19 14 13.6870 -4.3771 3.6619 20 1 15.0345 -4.7700 3.1772 21 1 13.8145 -3.2519 4.6225 22 1 13.0476 -5.5346 4.3374 23 6 9.1597 -2.5835 1.4349 24 6 3.5742 -1.2090 -0.0032 25 6 2.1954 -1.2007 0.0011 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6511 2.1336 0.0004 30 1 4.1099 2.1469 0.0010 31 1 6.2389 -1.8771 -0.8876 32 1 6.2390 -1.8762 0.8925 33 1 10.4184 -0.9476 -0.5387 34 1 9.9734 -2.1518 -1.7943 35 1 12.0291 -2.6931 -0.1217 36 1 10.8539 -3.9853 -0.5098 37 1 14.0504 -4.1468 0.8510 38 1 8.5313 -3.3826 1.8281 39 1 9.0897 -1.7046 2.0758 40 1 4.1100 -2.1468 -0.0069 41 1 1.6511 -2.1335 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204831647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -48.901673 kcal Electronic energy + Delta-G solvation = -21880.552943 eV Core-core repulsion = 18532.587925 eV Total energy + Delta-G solvation = -3347.965018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18937 -39.91790 -39.23061 -37.38283 -34.24561 -33.96144 -32.11196 -31.23002 -30.05213 -28.82405 -27.50844 -26.23325 -23.61649 -23.30439 -22.12828 -21.83632 -20.84481 -19.02423 -18.31362 -17.79294 -16.99243 -16.77243 -16.58371 -16.22033 -15.99816 -15.61489 -15.34439 -14.92405 -14.73436 -14.46889 -14.41556 -14.25991 -14.00076 -13.58649 -13.10250 -13.00595 -12.97251 -12.84699 -12.65213 -12.55823 -12.49284 -12.15853 -12.06399 -11.94575 -11.79005 -11.34786 -10.77738 -10.73139 -10.60585 -9.97946 -9.70641 -8.92533 -7.79325 -5.24781 -0.38219 0.40839 1.34069 1.46059 1.50109 1.56442 2.22135 2.49873 2.78190 3.23869 3.32647 3.68246 3.76853 3.81915 3.93915 4.00266 4.05161 4.12819 4.18275 4.27460 4.32493 4.38724 4.45319 4.62273 4.74368 4.78182 4.80616 4.86795 4.95748 4.98038 5.02417 5.08154 5.24003 5.31588 5.39711 5.43239 5.58477 5.59309 5.76326 5.94336 6.15488 6.28936 6.50846 7.07992 7.74386 8.37934 9.22694 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035963 B = 0.002619 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.396922 B =10687.623031 C =10932.561276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.074 4.074 5 C -0.192 4.192 6 C 0.397 3.603 7 O -0.484 6.484 8 C 0.006 3.994 9 O -0.384 6.384 10 C 0.091 3.909 11 H 0.101 0.899 12 C -0.129 4.129 13 C 0.155 3.845 14 N -0.626 5.626 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.985 3.015 20 H -0.291 1.291 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.112 3.888 24 C -0.066 4.066 25 C -0.136 4.136 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.003 0.997 37 H 0.249 0.751 38 H 0.038 0.962 39 H 0.018 0.982 40 H 0.156 0.844 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.140 4.278 -4.926 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.157 4.157 4 C -0.093 4.093 5 C -0.193 4.193 6 C 0.276 3.724 7 O -0.361 6.361 8 C -0.070 4.070 9 O -0.303 6.303 10 C 0.033 3.967 11 H 0.119 0.881 12 C -0.168 4.168 13 C 0.031 3.969 14 N -0.353 5.353 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.812 3.188 20 H -0.217 1.217 21 H -0.205 1.205 22 H -0.201 1.201 23 C -0.013 4.013 24 C -0.084 4.084 25 C -0.154 4.154 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.173 0.827 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.560 4.947 -4.880 28.422 hybrid contribution 1.047 -0.316 0.763 1.333 sum -26.513 4.631 -4.117 27.228 Atomic orbital electron populations 1.20962 0.88669 1.04270 1.03690 1.20645 0.98036 0.92824 0.93912 1.21274 0.93002 0.99389 1.02076 1.21485 0.95178 0.97415 0.95178 1.20289 0.92697 0.95942 1.10325 1.22819 0.89270 0.89879 0.70431 1.90529 1.72097 1.36080 1.37355 1.23122 0.81918 0.96733 1.05223 1.88040 1.16002 1.31115 1.95111 1.23107 0.91539 0.87342 0.94685 0.88109 1.22998 0.94177 0.99664 0.99935 1.21736 0.98894 0.93873 0.82446 1.44694 1.09122 1.77433 1.04077 1.19427 0.93870 1.36323 0.87682 0.90241 1.25691 0.98372 1.02243 0.99651 1.70026 1.15141 1.54340 1.20334 0.85064 0.77451 0.78190 0.78076 1.21666 1.20548 1.20059 1.21868 0.86258 0.96550 0.96654 1.21755 0.95145 0.97107 0.94409 1.21420 0.93639 0.99113 1.01198 0.89571 0.89863 0.90455 0.83581 0.86159 0.86370 0.87603 0.92685 0.88701 0.90673 0.97915 0.94118 0.94448 0.96416 0.82664 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.00 71.24 0.71 0.03 16 2 C -0.05 -0.63 5.89 -19.78 -0.12 -0.75 16 3 C -0.14 -2.05 9.68 22.23 0.22 -1.84 16 4 C -0.07 -1.52 9.60 22.58 0.22 -1.31 16 5 C -0.19 -4.05 5.87 -20.15 -0.12 -4.17 16 6 C 0.40 10.93 7.19 28.03 0.20 11.13 16 7 O -0.48 -17.86 16.49 16.10 0.27 -17.60 16 8 C 0.01 0.16 4.87 71.24 0.35 0.50 16 9 O -0.38 -13.61 9.61 -129.94 -1.25 -14.86 16 10 C 0.09 3.30 3.44 31.79 0.11 3.40 16 11 H 0.10 2.95 7.82 -2.39 -0.02 2.93 16 12 C -0.13 -5.25 6.81 31.99 0.22 -5.03 16 13 C 0.16 7.93 5.89 86.86 0.51 8.44 16 14 N -0.63 -33.91 3.39 -691.97 -2.35 -36.25 16 15 C -0.24 -14.22 10.27 84.03 0.86 -13.36 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 18 N -0.95 -57.57 10.09 21.65 0.22 -57.36 16 19 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 C 0.11 4.94 7.03 86.73 0.61 5.55 16 24 C -0.07 -0.96 9.47 22.58 0.21 -0.74 16 25 C -0.14 -1.55 9.68 22.22 0.22 -1.33 16 26 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 28 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 29 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.12 2.69 7.65 -2.91 -0.02 2.67 16 31 H 0.12 2.03 8.05 -2.38 -0.02 2.01 16 32 H 0.11 2.12 8.09 -2.39 -0.02 2.10 16 33 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.08 4.38 5.87 -2.39 -0.01 4.36 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.02 0.83 8.05 -2.39 -0.02 0.81 16 40 H 0.16 1.45 7.05 -2.91 -0.02 1.43 16 41 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -76.74 343.35 4.59 -72.15 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.01 Total: 8.28 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.66 Total: -2.91 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -2.13 Total: -93.61 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.98 Total: -32.46 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.74 4.59 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204831647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.252 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds