Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38398 * 119.82868 * 2 1 4 4 C 1.37887 * 120.17646 * 179.97438 * 3 2 1 5 5 C 1.39853 * 119.82005 * 0.02562 * 4 3 2 6 6 C 1.47164 * 120.16716 * 179.97438 * 5 4 3 7 7 O 1.21258 * 120.00495 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99890 * 179.97438 * 6 5 4 9 9 O 1.42906 * 109.46935 * 179.97438 * 8 6 5 10 10 C 1.42903 * 113.99676 * 180.02562 * 9 8 6 11 11 C 1.53514 * 114.17081 * 149.99722 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.39843 * 119.66035 * 0.24568 * 5 4 3 24 24 C 1.37894 * 119.82543 * 359.47874 * 23 5 4 25 25 H 1.09005 * 109.47144 * 90.00107 * 1 2 3 26 26 H 1.08999 * 109.47484 * 209.99738 * 1 2 3 27 27 H 1.08997 * 109.47412 * 330.00169 * 1 2 3 28 28 H 1.08003 * 119.91082 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.08803 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47386 * 59.99478 * 8 6 5 31 31 H 1.08994 * 109.46963 * 299.99410 * 8 6 5 32 32 H 1.08997 * 113.25538 * 17.04389 * 10 9 8 33 33 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 34 34 H 1.08997 * 113.47627 * 202.38796 * 11 10 9 35 35 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 36 36 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 39 39 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 40 40 H 1.08006 * 120.09068 * 179.72761 * 23 5 4 41 41 H 1.08002 * 119.91558 * 180.25303 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2006 0.0000 4 6 3.5742 1.2090 0.0005 5 6 4.2771 -0.0001 0.0005 6 6 5.7487 -0.0001 0.0005 7 8 6.3551 1.0500 0.0001 8 6 6.5022 -1.3053 0.0011 9 8 7.9072 -1.0441 0.0004 10 6 8.7172 -2.2214 0.0003 11 6 10.0724 -2.0520 -0.7007 12 7 10.6188 -1.5819 0.5860 13 6 11.9569 -2.1392 0.8247 14 6 12.5816 -1.4542 2.0127 15 1 12.0393 -0.6818 2.5377 16 6 13.8463 -1.8129 2.4289 17 7 14.5071 -2.7531 1.7893 18 14 14.6211 -0.9633 3.9010 19 1 15.3798 0.2280 3.4424 20 1 13.5559 -0.5387 4.8447 21 1 15.5434 -1.9039 4.5864 22 6 9.5827 -2.3889 1.2570 23 6 3.5742 -1.2091 -0.0052 24 6 2.1953 -1.2008 0.0000 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1468 0.0001 30 1 6.2389 -1.8773 -0.8886 31 1 6.2390 -1.8763 0.8914 32 1 8.1722 -3.1187 -0.2928 33 1 10.0673 -1.2860 -1.4761 34 1 10.5067 -2.9926 -1.0393 35 1 12.5794 -1.9795 -0.0558 36 1 11.8752 -3.2080 1.0229 37 1 15.3969 -3.0052 2.0819 38 1 9.8865 -3.4195 1.4409 39 1 9.1628 -1.9085 2.1407 40 1 4.1100 -2.1469 -0.0097 41 1 1.6511 -2.1336 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204831699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = -14.334071 kcal Electronic energy + Delta-G solvation = -21521.317361 eV Core-core repulsion = 18174.851307 eV Total energy + Delta-G solvation = -3346.466054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.35319 -39.51953 -38.53327 -36.20915 -33.38454 -32.78161 -31.49512 -29.64754 -28.73334 -26.83519 -25.39050 -24.95350 -23.02019 -22.61157 -21.67577 -20.07135 -19.47126 -17.23985 -16.77969 -16.22925 -15.97135 -15.75342 -15.62864 -15.21691 -14.65050 -14.38159 -14.33661 -14.04186 -13.95695 -13.82666 -13.46686 -13.16758 -12.68840 -12.35935 -12.29220 -12.04333 -12.00717 -11.88096 -11.39785 -11.18013 -11.03197 -10.75619 -10.45706 -10.20157 -9.79107 -9.59254 -9.38913 -9.24639 -9.18178 -9.08337 -8.37718 -7.73833 -5.98729 -3.99013 0.35143 0.99619 2.18498 3.20153 3.36719 3.41832 3.42392 3.47404 4.18552 4.34622 4.40480 4.48234 4.57065 4.75355 4.81994 4.91475 4.97526 5.07282 5.12405 5.12926 5.19341 5.23158 5.27885 5.33581 5.36595 5.60095 5.61813 5.83138 5.89881 5.99106 6.04259 6.12066 6.18029 6.28213 6.42130 6.50199 6.73523 7.19389 7.29648 7.50294 7.72770 7.93574 8.17524 8.53610 9.09261 9.64815 11.12446 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.002443 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.701822 B =11456.302765 C =11786.059527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 C -0.133 4.133 4 C -0.056 4.056 5 C -0.166 4.166 6 C 0.392 3.608 7 O -0.421 6.421 8 C 0.015 3.985 9 O -0.330 6.330 10 C 0.051 3.949 11 C -0.006 4.006 12 N -0.455 5.455 13 C 0.156 3.844 14 C -0.501 4.501 15 H 0.064 0.936 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.288 1.288 22 C -0.008 4.008 23 C -0.071 4.071 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.003 0.997 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.639 -0.037 -5.667 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.151 4.151 4 C -0.074 4.074 5 C -0.167 4.167 6 C 0.266 3.734 7 O -0.293 6.293 8 C -0.063 4.063 9 O -0.248 6.248 10 C -0.007 4.007 11 C -0.135 4.135 12 N -0.178 5.178 13 C 0.030 3.970 14 C -0.540 4.540 15 H 0.082 0.918 16 C -0.149 4.149 17 N -0.542 5.542 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.213 1.213 22 C -0.137 4.137 23 C -0.089 4.089 24 C -0.152 4.152 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.151 0.849 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -28.932 1.345 -5.508 29.483 hybrid contribution 0.541 -0.923 0.650 1.252 sum -28.391 0.422 -4.859 28.807 Atomic orbital electron populations 1.20886 0.90834 1.03214 1.02725 1.20227 0.96423 0.93219 0.95994 1.21047 0.93887 0.97917 1.02258 1.21437 0.94040 0.97945 0.94012 1.20407 0.94312 0.94557 1.07460 1.22296 0.87885 0.90374 0.72823 1.90585 1.70795 1.34370 1.33578 1.22786 0.84457 0.96612 1.02416 1.88136 1.13105 1.29043 1.94512 1.23415 0.91380 0.87052 0.98901 1.24032 0.92356 1.00219 0.96938 1.69064 1.03660 1.43798 1.01269 1.20301 0.85374 0.93562 0.97788 1.21129 1.00209 1.20074 1.12559 0.91819 1.25017 0.97142 0.95339 0.97363 1.69961 1.12862 1.30536 1.40860 0.86463 0.79047 0.79204 0.82514 1.20599 1.19824 1.21346 1.24227 0.94014 0.97833 0.97664 1.21465 0.94397 0.97268 0.95792 1.21027 0.93980 0.97851 1.02296 0.90675 0.91157 0.91186 0.85343 0.84659 0.90024 0.89861 0.90814 0.90000 0.91058 0.95310 0.97970 0.92998 0.91094 0.90245 0.84932 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.00 36.01 0.36 -0.15 16 2 C -0.06 -0.40 5.89 -104.50 -0.62 -1.01 16 3 C -0.13 -1.03 9.68 -39.65 -0.38 -1.41 16 4 C -0.06 -0.55 9.60 -39.11 -0.38 -0.93 16 5 C -0.17 -1.72 5.87 -105.07 -0.62 -2.33 16 6 C 0.39 5.16 7.19 -30.68 -0.22 4.94 16 7 O -0.42 -7.39 16.49 -14.34 -0.24 -7.63 16 8 C 0.01 0.18 4.87 36.01 0.18 0.35 16 9 O -0.33 -5.68 9.92 -55.14 -0.55 -6.23 16 10 C 0.05 0.82 4.66 -26.20 -0.12 0.70 16 11 C -0.01 -0.11 7.52 -7.53 -0.06 -0.17 16 12 N -0.45 -10.74 6.32 -246.08 -1.55 -12.29 16 13 C 0.16 4.25 4.57 -4.98 -0.02 4.23 16 14 C -0.50 -14.97 9.39 -34.44 -0.32 -15.30 16 15 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.90 22.59 29.54 -169.99 -5.02 17.57 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 C -0.01 -0.15 7.55 -7.54 -0.06 -0.21 16 23 C -0.07 -0.55 9.47 -39.11 -0.37 -0.92 16 24 C -0.13 -0.89 9.68 -39.64 -0.38 -1.28 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 27 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 28 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 29 H 0.14 1.36 7.65 -52.48 -0.40 0.96 16 30 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 35 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16 36 H 0.00 0.07 7.30 -51.93 -0.38 -0.31 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.13 0.71 7.05 -52.48 -0.37 0.34 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -35.93 350.57 -10.56 -46.49 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.11 Total: -4.37 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.11 Total: -12.03 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.82 Total: -39.09 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.78 Total: -13.85 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.93 -10.56 -46.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204831699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.158 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds