Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38398 * 119.82868 * 2 1 4 4 C 1.37887 * 120.17646 * 179.97438 * 3 2 1 5 5 C 1.39853 * 119.82005 * 0.02562 * 4 3 2 6 6 C 1.47164 * 120.16716 * 179.97438 * 5 4 3 7 7 O 1.21258 * 120.00495 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99890 * 179.97438 * 6 5 4 9 9 O 1.42906 * 109.46935 * 179.97438 * 8 6 5 10 10 C 1.42903 * 113.99676 * 180.02562 * 9 8 6 11 11 C 1.53514 * 114.17081 * 149.99722 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.39843 * 119.66035 * 0.24568 * 5 4 3 24 24 C 1.37894 * 119.82543 * 359.47874 * 23 5 4 25 25 H 1.09005 * 109.47144 * 90.00107 * 1 2 3 26 26 H 1.08999 * 109.47484 * 209.99738 * 1 2 3 27 27 H 1.08997 * 109.47412 * 330.00169 * 1 2 3 28 28 H 1.08003 * 119.91082 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.08803 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47386 * 59.99478 * 8 6 5 31 31 H 1.08994 * 109.46963 * 299.99410 * 8 6 5 32 32 H 1.08997 * 113.25538 * 17.04389 * 10 9 8 33 33 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 34 34 H 1.08997 * 113.47627 * 202.38796 * 11 10 9 35 35 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 36 36 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 39 39 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 40 40 H 1.08006 * 120.09068 * 179.72761 * 23 5 4 41 41 H 1.08002 * 119.91558 * 180.25303 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2006 0.0000 4 6 3.5742 1.2090 0.0005 5 6 4.2771 -0.0001 0.0005 6 6 5.7487 -0.0001 0.0005 7 8 6.3551 1.0500 0.0001 8 6 6.5022 -1.3053 0.0011 9 8 7.9072 -1.0441 0.0004 10 6 8.7172 -2.2214 0.0003 11 6 10.0724 -2.0520 -0.7007 12 7 10.6188 -1.5819 0.5860 13 6 11.9569 -2.1392 0.8247 14 6 12.5816 -1.4542 2.0127 15 1 12.0393 -0.6818 2.5377 16 6 13.8463 -1.8129 2.4289 17 7 14.5071 -2.7531 1.7893 18 14 14.6211 -0.9633 3.9010 19 1 15.3798 0.2280 3.4424 20 1 13.5559 -0.5387 4.8447 21 1 15.5434 -1.9039 4.5864 22 6 9.5827 -2.3889 1.2570 23 6 3.5742 -1.2091 -0.0052 24 6 2.1953 -1.2008 0.0000 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1468 0.0001 30 1 6.2389 -1.8773 -0.8886 31 1 6.2390 -1.8763 0.8914 32 1 8.1722 -3.1187 -0.2928 33 1 10.0673 -1.2860 -1.4761 34 1 10.5067 -2.9926 -1.0393 35 1 12.5794 -1.9795 -0.0558 36 1 11.8752 -3.2080 1.0229 37 1 15.3969 -3.0052 2.0819 38 1 9.8865 -3.4195 1.4409 39 1 9.1628 -1.9085 2.1407 40 1 4.1100 -2.1469 -0.0097 41 1 1.6511 -2.1336 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204831699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -38.879226 kcal Electronic energy + Delta-G solvation = -21522.381719 eV Core-core repulsion = 18174.851307 eV Total energy + Delta-G solvation = -3347.530412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.32073 -40.83168 -39.40372 -37.53846 -35.00159 -33.98623 -32.10919 -31.23866 -29.84527 -27.66323 -27.04426 -26.66180 -23.65489 -23.56952 -23.28963 -20.94565 -20.83178 -18.60929 -18.16762 -17.78831 -16.98674 -16.91325 -16.71882 -16.20705 -16.04450 -15.73397 -15.40833 -15.19406 -14.78778 -14.78457 -14.43184 -14.42893 -13.96849 -13.74218 -13.49984 -13.00525 -12.99444 -12.83974 -12.80157 -12.55036 -12.43599 -12.31530 -11.99585 -11.93450 -11.48703 -11.28852 -10.72824 -10.64428 -10.50757 -9.96833 -9.69599 -9.53230 -8.25408 -6.35369 -0.36335 0.41828 1.36339 1.36629 1.38761 1.50308 2.18587 2.37394 2.79455 3.05783 3.13987 3.43216 3.58234 3.78088 3.95009 3.98792 4.01167 4.12418 4.27078 4.35080 4.38121 4.42779 4.49732 4.52897 4.66367 4.69911 4.78332 4.81127 4.86445 4.87177 4.99204 5.03281 5.08810 5.24712 5.32286 5.41074 5.57179 5.59451 5.80639 5.95425 6.07502 6.20126 6.49051 6.55680 6.78741 7.33921 8.85452 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.002443 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.701822 B =11456.302765 C =11786.059527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.191 4.191 6 C 0.392 3.608 7 O -0.487 6.487 8 C 0.007 3.993 9 O -0.370 6.370 10 C 0.083 3.917 11 C -0.011 4.011 12 N -0.495 5.495 13 C 0.173 3.827 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.970 3.030 19 H -0.274 1.274 20 H -0.269 1.269 21 H -0.274 1.274 22 C -0.013 4.013 23 C -0.063 4.063 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.076 0.924 34 H 0.086 0.914 35 H -0.001 1.001 36 H -0.011 1.011 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.389 -1.815 -5.389 32.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.055 4.055 3 C -0.159 4.159 4 C -0.096 4.096 5 C -0.192 4.192 6 C 0.272 3.728 7 O -0.364 6.364 8 C -0.069 4.069 9 O -0.289 6.289 10 C 0.025 3.975 11 C -0.140 4.140 12 N -0.218 5.218 13 C 0.046 3.954 14 C -0.567 4.567 15 H 0.068 0.932 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.194 1.194 21 H -0.199 1.199 22 C -0.143 4.143 23 C -0.081 4.081 24 C -0.153 4.153 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.017 0.983 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.179 0.821 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -31.720 -0.453 -5.240 32.153 hybrid contribution 1.235 -0.374 0.521 1.392 sum -30.485 -0.827 -4.719 30.859 Atomic orbital electron populations 1.20961 0.88738 1.04249 1.03660 1.20641 0.98002 0.92868 0.93996 1.21255 0.93005 0.99414 1.02207 1.21482 0.95201 0.97517 0.95360 1.20306 0.92751 0.95927 1.10230 1.22922 0.89292 0.90139 0.70477 1.90564 1.72131 1.36376 1.37289 1.23180 0.81535 0.96507 1.05702 1.88097 1.16013 1.30249 1.94510 1.23195 0.90640 0.88711 0.94979 1.24128 0.94305 1.00540 0.95075 1.68970 1.02549 1.45351 1.04929 1.19956 0.87335 0.92536 0.95572 1.21411 1.01103 1.20429 1.13801 0.93203 1.25918 0.97445 0.95883 1.00344 1.70060 1.13325 1.31458 1.42266 0.85374 0.78162 0.78304 0.78717 1.19920 1.19362 1.19858 1.24302 0.93719 0.97382 0.98886 1.21775 0.95034 0.97090 0.94234 1.21442 0.93733 0.99022 1.01109 0.89612 0.89742 0.90626 0.83863 0.86537 0.85867 0.86780 0.85096 0.90548 0.89618 0.98299 0.99338 0.92474 0.90336 0.91306 0.82100 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 71.24 0.71 0.11 16 2 C -0.05 -0.60 5.89 -19.79 -0.12 -0.72 16 3 C -0.14 -2.04 9.68 22.22 0.22 -1.83 16 4 C -0.08 -1.57 9.60 22.58 0.22 -1.35 16 5 C -0.19 -3.82 5.87 -20.15 -0.12 -3.94 16 6 C 0.39 10.36 7.19 28.03 0.20 10.57 16 7 O -0.49 -18.20 16.49 16.08 0.27 -17.94 16 8 C 0.01 0.15 4.87 71.24 0.35 0.49 16 9 O -0.37 -12.31 9.92 -129.94 -1.29 -13.60 16 10 C 0.08 2.49 4.66 30.94 0.14 2.64 16 11 C -0.01 -0.42 7.52 83.58 0.63 0.21 16 12 N -0.50 -23.95 6.32 -932.85 -5.89 -29.84 16 13 C 0.17 9.79 4.57 85.55 0.39 10.18 16 14 C -0.53 -32.59 9.39 25.60 0.24 -32.35 16 15 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 16 C 0.00 0.13 5.46 84.66 0.46 0.60 16 17 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 18 Si 0.97 46.76 29.54 68.60 2.03 48.78 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 C -0.01 -0.52 7.55 83.58 0.63 0.11 16 23 C -0.06 -0.78 9.47 22.58 0.21 -0.57 16 24 C -0.14 -1.31 9.68 22.23 0.22 -1.10 16 25 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 26 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 27 H 0.07 0.32 8.08 -2.39 -0.02 0.31 16 28 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.12 2.67 7.65 -2.91 -0.02 2.65 16 30 H 0.12 1.60 8.08 -2.39 -0.02 1.58 16 31 H 0.11 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.13 2.50 7.88 -2.39 -0.02 2.48 16 33 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.09 2.93 7.91 -2.39 -0.02 2.91 16 35 H 0.00 -0.07 8.08 -2.38 -0.02 -0.09 16 36 H -0.01 -0.64 7.30 -2.39 -0.02 -0.66 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.08 2.89 7.42 -2.39 -0.02 2.88 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.16 0.95 7.05 -2.91 -0.02 0.93 16 41 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -83.01 350.57 0.79 -82.22 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.01 Total: 4.61 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.38 Total: -16.95 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -5.61 Total: -87.12 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.02 Total: -31.54 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -83.01 0.79 -82.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204831699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.341 kcal (2) G-P(sol) polarization free energy of solvation -83.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds