Wall clock time and date at job start Tue Mar 31 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21297 * 120.00304 * 2 1 4 4 C 1.46865 * 120.00268 * 179.97438 * 2 1 3 5 5 C 1.40032 * 120.11362 * 185.65648 * 4 2 1 6 6 C 1.36584 * 120.00632 * 180.02562 * 5 4 2 7 7 C 1.39076 * 120.24347 * 0.02562 * 6 5 4 8 8 O 1.35665 * 119.88852 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99731 * 6.11075 * 8 7 6 10 10 C 1.53513 * 114.17228 * 157.13422 * 9 8 7 11 11 N 1.47485 * 87.93149 * 87.81036 * 10 9 8 12 12 C 1.46905 * 110.99721 * 138.70243 * 11 10 9 13 13 C 1.50703 * 109.46579 * 169.99726 * 12 11 10 14 14 H 1.07993 * 120.00445 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99370 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00484 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99810 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47367 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46903 * 300.00011 * 17 15 13 20 20 H 1.48498 * 109.47024 * 59.99542 * 17 15 13 21 21 C 1.47481 * 87.83635 * 27.01325 * 11 10 9 22 22 C 1.39081 * 120.23066 * 0.23590 * 7 6 5 23 23 C 1.50699 * 120.00784 * 179.74710 * 22 7 6 24 24 C 1.37655 * 119.98460 * 359.48158 * 22 7 6 25 25 H 1.09000 * 109.47190 * 174.92530 * 1 2 3 26 26 H 1.09004 * 109.47246 * 294.92288 * 1 2 3 27 27 H 1.08999 * 109.47364 * 54.92313 * 1 2 3 28 28 H 1.08000 * 119.99874 * 0.02562 * 5 4 2 29 29 H 1.07996 * 119.88181 * 180.02562 * 6 5 4 30 30 H 1.08998 * 113.25876 * 24.17614 * 9 8 7 31 31 H 1.08996 * 113.47528 * 333.04787 * 10 9 8 32 32 H 1.08995 * 113.52872 * 202.58269 * 10 9 8 33 33 H 1.08997 * 109.46965 * 50.00106 * 12 11 10 34 34 H 1.08991 * 109.47197 * 289.99995 * 12 11 10 35 35 H 0.97001 * 120.00231 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.47986 * 87.75587 * 21 11 10 37 37 H 1.09007 * 113.47320 * 218.22602 * 21 11 10 38 38 H 1.08997 * 109.47582 * 89.99540 * 23 22 7 39 39 H 1.09003 * 109.47004 * 209.99738 * 23 22 7 40 40 H 1.09006 * 109.46848 * 329.99692 * 23 22 7 41 41 H 1.07996 * 120.11917 * 180.25630 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6365 -1.2775 0.1200 6 6 4.3173 -2.4615 0.1197 7 6 3.6300 -3.6647 0.0006 8 8 4.3135 -4.8366 0.0007 9 6 5.7171 -4.7689 0.2607 10 6 6.3224 -6.0773 0.7882 11 7 6.5274 -6.4855 -0.6141 12 6 7.8324 -7.1373 -0.7873 13 6 7.9068 -7.7557 -2.1596 14 1 7.0688 -7.6723 -2.8356 15 6 9.0450 -8.4278 -2.5520 16 7 10.0654 -8.5297 -1.7286 17 14 9.1376 -9.1936 -4.2533 18 1 10.4562 -9.8537 -4.4279 19 1 8.0567 -10.2010 -4.4021 20 1 8.9730 -8.1355 -5.2821 21 6 6.6015 -5.0540 -0.9614 22 6 2.2448 -3.6705 -0.1240 23 6 1.5057 -4.9769 -0.2584 24 6 1.5487 -2.4830 -0.1190 25 1 -0.3633 -1.0236 -0.0909 26 1 -0.3634 0.4331 0.9320 27 1 -0.3634 0.5906 -0.8410 28 1 4.1743 -0.3454 0.2123 29 1 5.3933 -2.4635 0.2123 30 1 6.0080 -3.8830 0.8251 31 1 5.6069 -6.7025 1.3222 32 1 7.2520 -5.9355 1.3394 33 1 7.9538 -7.9137 -0.0319 34 1 8.6254 -6.3975 -0.6786 35 1 10.8662 -9.0022 -2.0049 36 1 7.6055 -4.6382 -0.8773 37 1 6.1223 -4.8120 -1.9101 38 1 1.2358 -5.3453 0.7313 39 1 0.6018 -4.8239 -0.8481 40 1 2.1449 -5.7065 -0.7558 41 1 0.4727 -2.4852 -0.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226032575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:45 Heat of formation + Delta-G solvation = -7.711509 kcal Electronic energy + Delta-G solvation = -22089.999262 eV Core-core repulsion = 18743.820383 eV Total energy + Delta-G solvation = -3346.178878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83287 -39.77850 -38.61190 -36.60783 -33.09651 -32.84152 -31.80036 -29.48852 -28.92869 -26.95072 -25.74253 -25.41416 -23.75800 -22.49878 -21.35397 -20.06384 -19.32936 -18.00824 -16.59614 -16.43703 -16.32152 -15.67854 -15.22979 -15.07935 -14.97229 -14.60713 -14.39391 -13.95979 -13.63665 -13.45555 -13.16107 -13.02107 -12.76318 -12.51337 -12.43846 -12.13808 -12.02427 -11.93787 -11.67484 -11.44578 -10.98105 -10.88088 -10.55906 -10.40607 -10.16420 -9.93201 -9.73755 -9.33328 -9.12040 -8.47589 -8.22431 -7.94409 -6.07833 -4.09171 0.55298 1.16404 2.23631 3.03143 3.31779 3.35307 3.39047 3.58234 3.88889 4.38677 4.46137 4.51802 4.61540 4.69878 4.76560 4.91530 5.00840 5.06975 5.10741 5.27356 5.28502 5.30278 5.43367 5.61427 5.64849 5.70238 5.71217 5.78490 5.94192 6.00831 6.06269 6.11694 6.19239 6.23169 6.28924 6.51458 6.58088 7.06749 7.34787 7.38619 7.57729 7.79189 8.03430 8.39097 8.98156 9.55235 11.03203 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.002860 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.692925 B = 9788.507248 C = 9873.446520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.400 3.600 3 O -0.471 6.471 4 C -0.223 4.223 5 C -0.022 4.022 6 C -0.222 4.222 7 C 0.175 3.825 8 O -0.266 6.266 9 C 0.040 3.960 10 C 0.002 3.998 11 N -0.455 5.455 12 C 0.156 3.844 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.287 1.287 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.005 4.005 22 C -0.135 4.135 23 C -0.106 4.106 24 C -0.036 4.036 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.004 0.996 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 13.447 6.325 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.280 3.720 3 O -0.348 6.348 4 C -0.224 4.224 5 C -0.040 4.040 6 C -0.241 4.241 7 C 0.128 3.872 8 O -0.177 6.177 9 C -0.017 4.017 10 C -0.128 4.128 11 N -0.179 5.179 12 C 0.030 3.970 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.163 4.163 24 C -0.054 4.054 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.583 13.206 5.952 22.781 hybrid contribution 1.155 0.029 -0.505 1.261 sum -16.428 13.235 5.447 21.788 Atomic orbital electron populations 1.22236 0.94166 1.04715 1.04768 1.22313 0.91472 0.87622 0.70567 1.90535 1.72115 1.34460 1.37711 1.20297 0.94581 0.94605 1.12892 1.20884 0.92975 0.98034 0.92102 1.21074 1.01215 0.91918 1.09856 1.19363 0.91389 0.85446 0.91035 1.86144 1.21112 1.27086 1.83349 1.23830 0.78673 0.99755 0.99448 1.23999 0.99457 0.93681 0.95632 1.69110 1.33444 1.09167 1.06138 1.20304 0.83705 0.94495 0.98464 1.21046 1.00460 1.33792 0.99137 0.91869 1.25005 0.95573 0.96360 0.97740 1.69936 1.05188 1.43007 1.35895 0.86520 0.77105 0.79490 0.84089 1.21313 1.20095 1.20223 1.24254 0.98212 0.92830 0.98176 1.19253 0.90440 0.96654 1.07250 1.20628 0.99569 0.93754 1.02313 1.21198 0.99602 0.90179 0.94384 0.89835 0.88822 0.89035 0.84948 0.84432 0.89373 0.89599 0.90273 0.95127 0.97809 0.92806 0.90407 0.89890 0.91312 0.91691 0.90354 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 10.19 36.00 0.37 -0.88 16 2 C 0.40 4.13 7.20 -30.82 -0.22 3.91 16 3 O -0.47 -6.45 17.10 5.54 0.09 -6.36 16 4 C -0.22 -2.40 5.87 -105.06 -0.62 -3.02 16 5 C -0.02 -0.25 9.54 -39.51 -0.38 -0.63 16 6 C -0.22 -2.68 8.95 -39.87 -0.36 -3.04 16 7 C 0.18 2.31 6.66 -38.96 -0.26 2.05 16 8 O -0.27 -4.04 9.22 -18.70 -0.17 -4.21 16 9 C 0.04 0.59 4.03 -26.20 -0.11 0.48 16 10 C 0.00 0.03 7.52 -7.54 -0.06 -0.03 16 11 N -0.46 -9.75 6.32 -246.08 -1.55 -11.30 16 12 C 0.16 4.00 4.57 -4.97 -0.02 3.98 16 13 C -0.51 -14.37 9.39 -34.44 -0.32 -14.69 16 14 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.01 -0.09 7.56 -7.54 -0.06 -0.15 16 22 C -0.14 -1.54 5.89 -104.52 -0.62 -2.16 16 23 C -0.11 -1.06 9.79 36.01 0.35 -0.71 16 24 C -0.04 -0.34 9.09 -39.12 -0.36 -0.69 16 25 H 0.08 0.36 5.62 -51.93 -0.29 0.06 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.13 1.47 7.65 -52.49 -0.40 1.06 16 29 H 0.14 1.51 5.88 -52.49 -0.31 1.20 16 30 H 0.09 1.06 5.92 -51.93 -0.31 0.75 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 33 H 0.03 0.83 8.08 -51.93 -0.42 0.42 16 34 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 40 H 0.08 0.94 7.53 -51.93 -0.39 0.55 16 41 H 0.14 0.85 5.94 -52.49 -0.31 0.54 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -32.55 342.64 -9.18 -41.74 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.69 Total: -1.78 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.75 Total: -14.12 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.82 Total: -37.16 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.55 -9.18 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226032575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.025 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds