Wall clock time and date at job start Tue Mar 31 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21297 * 120.00304 * 2 1 4 4 C 1.46865 * 120.00268 * 179.97438 * 2 1 3 5 5 C 1.40032 * 120.11362 * 185.65648 * 4 2 1 6 6 C 1.36584 * 120.00632 * 180.02562 * 5 4 2 7 7 C 1.39076 * 120.24347 * 0.02562 * 6 5 4 8 8 O 1.35665 * 119.88852 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99731 * 6.11075 * 8 7 6 10 10 C 1.53513 * 114.17228 * 157.13422 * 9 8 7 11 11 N 1.47485 * 87.93149 * 87.81036 * 10 9 8 12 12 C 1.46905 * 110.99721 * 138.70243 * 11 10 9 13 13 C 1.50703 * 109.46579 * 169.99726 * 12 11 10 14 14 H 1.07993 * 120.00445 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99370 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00484 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99810 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47367 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46903 * 300.00011 * 17 15 13 20 20 H 1.48498 * 109.47024 * 59.99542 * 17 15 13 21 21 C 1.47481 * 87.83635 * 27.01325 * 11 10 9 22 22 C 1.39081 * 120.23066 * 0.23590 * 7 6 5 23 23 C 1.50699 * 120.00784 * 179.74710 * 22 7 6 24 24 C 1.37655 * 119.98460 * 359.48158 * 22 7 6 25 25 H 1.09000 * 109.47190 * 174.92530 * 1 2 3 26 26 H 1.09004 * 109.47246 * 294.92288 * 1 2 3 27 27 H 1.08999 * 109.47364 * 54.92313 * 1 2 3 28 28 H 1.08000 * 119.99874 * 0.02562 * 5 4 2 29 29 H 1.07996 * 119.88181 * 180.02562 * 6 5 4 30 30 H 1.08998 * 113.25876 * 24.17614 * 9 8 7 31 31 H 1.08996 * 113.47528 * 333.04787 * 10 9 8 32 32 H 1.08995 * 113.52872 * 202.58269 * 10 9 8 33 33 H 1.08997 * 109.46965 * 50.00106 * 12 11 10 34 34 H 1.08991 * 109.47197 * 289.99995 * 12 11 10 35 35 H 0.97001 * 120.00231 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.47986 * 87.75587 * 21 11 10 37 37 H 1.09007 * 113.47320 * 218.22602 * 21 11 10 38 38 H 1.08997 * 109.47582 * 89.99540 * 23 22 7 39 39 H 1.09003 * 109.47004 * 209.99738 * 23 22 7 40 40 H 1.09006 * 109.46848 * 329.99692 * 23 22 7 41 41 H 1.07996 * 120.11917 * 180.25630 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6365 -1.2775 0.1200 6 6 4.3173 -2.4615 0.1197 7 6 3.6300 -3.6647 0.0006 8 8 4.3135 -4.8366 0.0007 9 6 5.7171 -4.7689 0.2607 10 6 6.3224 -6.0773 0.7882 11 7 6.5274 -6.4855 -0.6141 12 6 7.8324 -7.1373 -0.7873 13 6 7.9068 -7.7557 -2.1596 14 1 7.0688 -7.6723 -2.8356 15 6 9.0450 -8.4278 -2.5520 16 7 10.0654 -8.5297 -1.7286 17 14 9.1376 -9.1936 -4.2533 18 1 10.4562 -9.8537 -4.4279 19 1 8.0567 -10.2010 -4.4021 20 1 8.9730 -8.1355 -5.2821 21 6 6.6015 -5.0540 -0.9614 22 6 2.2448 -3.6705 -0.1240 23 6 1.5057 -4.9769 -0.2584 24 6 1.5487 -2.4830 -0.1190 25 1 -0.3633 -1.0236 -0.0909 26 1 -0.3634 0.4331 0.9320 27 1 -0.3634 0.5906 -0.8410 28 1 4.1743 -0.3454 0.2123 29 1 5.3933 -2.4635 0.2123 30 1 6.0080 -3.8830 0.8251 31 1 5.6069 -6.7025 1.3222 32 1 7.2520 -5.9355 1.3394 33 1 7.9538 -7.9137 -0.0319 34 1 8.6254 -6.3975 -0.6786 35 1 10.8662 -9.0022 -2.0049 36 1 7.6055 -4.6382 -0.8773 37 1 6.1223 -4.8120 -1.9101 38 1 1.2358 -5.3453 0.7313 39 1 0.6018 -4.8239 -0.8481 40 1 2.1449 -5.7065 -0.7558 41 1 0.4727 -2.4852 -0.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226032575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:43 Heat of formation + Delta-G solvation = -29.381121 kcal Electronic energy + Delta-G solvation = -22090.938927 eV Core-core repulsion = 18743.820383 eV Total energy + Delta-G solvation = -3347.118543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92736 -40.83867 -39.70378 -37.71531 -35.04261 -33.86366 -32.61566 -31.19934 -29.70493 -27.79400 -27.44736 -26.89602 -24.84360 -23.83444 -22.70380 -21.16173 -20.27828 -19.09916 -18.55628 -17.43013 -17.41368 -17.05937 -16.52891 -16.20880 -15.97759 -15.86603 -15.43191 -15.27072 -15.12213 -14.51951 -14.20133 -14.14748 -13.88675 -13.67614 -13.49772 -13.17145 -13.08988 -12.91043 -12.85057 -12.74678 -12.61323 -12.38766 -12.28672 -11.85063 -11.55788 -11.46396 -11.28592 -10.74727 -10.63822 -9.95540 -9.64196 -9.18500 -8.25493 -6.35528 -0.31617 0.31276 1.38079 1.40711 1.41039 1.49365 1.94985 2.37294 2.71890 3.06574 3.16829 3.25280 3.28530 3.63361 3.68799 3.86597 4.07844 4.16990 4.17977 4.34536 4.40517 4.46262 4.57322 4.58923 4.65854 4.69453 4.71113 4.79148 4.89051 4.89283 4.93469 5.01616 5.12084 5.18999 5.28145 5.39403 5.45886 5.54561 5.70819 5.74586 6.04040 6.33739 6.42377 6.58215 6.77972 7.33975 8.85181 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.002860 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.692925 B = 9788.507248 C = 9873.446520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.400 3.600 3 O -0.513 6.513 4 C -0.228 4.228 5 C -0.036 4.036 6 C -0.225 4.225 7 C 0.148 3.852 8 O -0.284 6.284 9 C 0.066 3.934 10 C 0.001 3.999 11 N -0.483 5.483 12 C 0.172 3.828 13 C -0.529 4.529 14 H 0.054 0.946 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.279 1.279 19 H -0.270 1.270 20 H -0.269 1.269 21 C -0.009 4.009 22 C -0.142 4.142 23 C -0.104 4.104 24 C -0.021 4.021 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.004 0.996 34 H -0.013 1.013 35 H 0.266 0.734 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 14.170 6.066 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.283 3.717 3 O -0.393 6.393 4 C -0.229 4.229 5 C -0.055 4.055 6 C -0.243 4.243 7 C 0.101 3.899 8 O -0.196 6.196 9 C 0.010 3.990 10 C -0.128 4.128 11 N -0.206 5.206 12 C 0.045 3.955 13 C -0.567 4.567 14 H 0.072 0.928 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.204 1.204 19 H -0.195 1.195 20 H -0.194 1.194 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.160 4.160 24 C -0.038 4.038 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.023 0.977 34 H 0.005 0.995 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.024 13.935 5.700 25.053 hybrid contribution 1.814 -0.125 -0.388 1.860 sum -18.210 13.810 5.312 23.463 Atomic orbital electron populations 1.22281 0.90417 1.06719 1.05864 1.22913 0.93435 0.86536 0.68814 1.90530 1.73336 1.35645 1.39778 1.20604 0.94425 0.95732 1.12161 1.21012 0.93899 0.97838 0.92700 1.21127 1.01592 0.91780 1.09848 1.19659 0.92264 0.84991 0.92957 1.86116 1.20856 1.28490 1.84120 1.23540 0.78630 0.99777 0.97088 1.24063 1.00357 0.94929 0.93469 1.69008 1.30624 1.11297 1.09700 1.19966 0.85543 0.93511 0.96491 1.21374 1.00469 1.34528 1.00364 0.92773 1.25890 0.95069 0.96648 1.01849 1.70046 1.05718 1.43602 1.37823 0.85456 0.77452 0.78724 0.79134 1.20397 1.19472 1.19373 1.24282 0.99268 0.90906 0.99437 1.19581 0.89928 0.97979 1.06784 1.20642 0.99911 0.92408 1.03063 1.21553 1.01390 0.88605 0.92272 0.87344 0.87446 0.88034 0.85091 0.83891 0.86024 0.89017 0.89167 0.97743 0.99475 0.92507 0.90142 0.90809 0.90351 0.88983 0.92985 0.80388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 10.19 71.23 0.73 -0.96 16 2 C 0.40 7.41 7.20 27.94 0.20 7.62 16 3 O -0.51 -13.65 17.10 -3.08 -0.05 -13.70 16 4 C -0.23 -4.45 5.87 -20.15 -0.12 -4.57 16 5 C -0.04 -0.81 9.54 22.32 0.21 -0.60 16 6 C -0.23 -5.25 8.95 22.08 0.20 -5.05 16 7 C 0.15 3.75 6.66 22.67 0.15 3.90 16 8 O -0.28 -8.51 9.22 -89.81 -0.83 -9.34 16 9 C 0.07 1.93 4.03 30.94 0.12 2.06 16 10 C 0.00 0.03 7.52 83.58 0.63 0.66 16 11 N -0.48 -21.23 6.32 -932.86 -5.89 -27.12 16 12 C 0.17 9.14 4.57 85.56 0.39 9.53 16 13 C -0.53 -30.85 9.39 25.60 0.24 -30.61 16 14 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 17 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.01 -0.35 7.56 83.58 0.63 0.29 16 22 C -0.14 -2.94 5.89 -19.80 -0.12 -3.05 16 23 C -0.10 -1.85 9.79 71.24 0.70 -1.16 16 24 C -0.02 -0.32 9.09 22.57 0.21 -0.12 16 25 H 0.11 0.36 5.62 -2.39 -0.01 0.34 16 26 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.13 2.91 7.65 -2.91 -0.02 2.88 16 29 H 0.14 3.01 5.88 -2.91 -0.02 3.00 16 30 H 0.12 2.74 5.92 -2.39 -0.01 2.73 16 31 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.09 2.84 7.91 -2.39 -0.02 2.82 16 33 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 34 H -0.01 -0.69 7.30 -2.39 -0.02 -0.71 16 35 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.08 2.87 7.42 -2.39 -0.02 2.85 16 37 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.11 8.09 -2.39 -0.02 1.10 16 40 H 0.05 1.22 7.53 -2.38 -0.02 1.20 16 41 H 0.18 1.25 5.94 -2.91 -0.02 1.23 16 Total: -1.00 -72.67 342.64 1.21 -71.46 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.04 Total: 8.87 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.63 Total: -21.40 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -5.61 Total: -82.79 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.88 Total: -23.04 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.67 1.21 -71.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226032575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.079 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds