Wall clock time and date at job start Tue Mar 31 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21297 * 119.99852 * 2 1 4 4 C 1.46858 * 120.00103 * 179.97438 * 2 1 3 5 5 C 1.40040 * 120.11213 * 185.38515 * 4 2 1 6 6 C 1.36590 * 120.00408 * 179.97438 * 5 4 2 7 7 C 1.39071 * 120.24641 * 0.02562 * 6 5 4 8 8 O 1.35659 * 119.88845 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99971 * 4.38602 * 8 7 6 10 10 H 1.09002 * 110.64055 * 33.48201 * 9 8 7 11 11 C 1.55151 * 110.72521 * 156.63098 * 9 8 7 12 12 C 1.54914 * 101.58589 * 153.86614 * 11 9 8 13 13 N 1.47420 * 104.82941 * 322.99107 * 12 11 9 14 14 C 1.36941 * 125.64674 * 204.09355 * 13 12 11 15 15 H 1.08005 * 119.99590 * 168.22146 * 14 13 12 16 16 C 1.38804 * 119.99923 * 348.22022 * 14 13 12 17 17 N 1.31615 * 119.99987 * 328.83307 * 16 14 13 18 18 Si 1.86803 * 119.99739 * 148.82849 * 16 14 13 19 19 H 1.48501 * 109.46934 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47474 * 300.00269 * 18 16 14 21 21 H 1.48499 * 109.46984 * 60.00544 * 18 16 14 22 22 C 1.47027 * 108.70719 * 24.35467 * 13 12 11 23 23 C 1.39084 * 120.22884 * 0.26907 * 7 6 5 24 24 C 1.50699 * 120.00588 * 179.70504 * 23 7 6 25 25 C 1.37647 * 119.98688 * 359.45684 * 23 7 6 26 26 H 1.08996 * 109.46907 * 185.24393 * 1 2 3 27 27 H 1.09000 * 109.47196 * 305.24058 * 1 2 3 28 28 H 1.08997 * 109.46913 * 65.24245 * 1 2 3 29 29 H 1.07993 * 120.00102 * 359.96332 * 5 4 2 30 30 H 1.07998 * 119.87248 * 180.02562 * 6 5 4 31 31 H 1.09001 * 111.00399 * 35.79078 * 11 9 8 32 32 H 1.09005 * 111.03649 * 271.95658 * 11 9 8 33 33 H 1.08996 * 110.36654 * 204.15487 * 12 11 9 34 34 H 1.08999 * 110.45719 * 81.87676 * 12 11 9 35 35 H 0.96999 * 120.00472 * 356.88916 * 17 16 14 36 36 H 1.09002 * 109.88120 * 118.12916 * 22 13 12 37 37 H 1.08993 * 109.88498 * 239.30091 * 22 13 12 38 38 H 1.09001 * 109.47144 * 90.00077 * 24 23 7 39 39 H 1.09004 * 109.47360 * 210.00404 * 24 23 7 40 40 H 1.09007 * 109.47404 * 330.00325 * 24 23 7 41 41 H 1.08004 * 120.12558 * 180.26789 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2718 0.0006 5 6 3.6371 -1.2772 0.1143 6 6 4.3178 -2.4614 0.1151 7 6 3.6300 -3.6648 0.0027 8 8 4.3133 -4.8367 0.0049 9 6 5.7238 -4.7649 0.2222 10 1 5.9670 -3.9463 0.8997 11 6 6.2639 -6.1114 0.7721 12 6 7.7378 -6.0729 0.2965 13 7 7.6887 -5.4384 -1.0333 14 6 8.6193 -5.5926 -2.0260 15 1 8.4052 -5.2441 -3.0256 16 6 9.8375 -6.1967 -1.7475 17 7 10.3743 -6.0751 -0.5519 18 14 10.7151 -7.1824 -3.0695 19 1 11.9865 -7.7212 -2.5232 20 1 9.8486 -8.3066 -3.5060 21 1 11.0076 -6.3034 -4.2301 22 6 6.4784 -4.6075 -1.1149 23 6 2.2443 -3.6709 -0.1169 24 6 1.5046 -4.9776 -0.2450 25 6 1.5483 -2.4833 -0.1131 26 1 -0.3633 -1.0233 0.0939 27 1 -0.3633 0.5930 0.8393 28 1 -0.3633 0.4304 -0.9332 29 1 4.1753 -0.3450 0.2011 30 1 5.3942 -2.4630 0.2033 31 1 5.7329 -6.9548 0.3307 32 1 6.2052 -6.1415 1.8601 33 1 8.1382 -7.0838 0.2199 34 1 8.3430 -5.4766 0.9793 35 1 9.9414 -5.5263 0.1206 36 1 6.7546 -3.5640 -1.2665 37 1 5.8487 -4.9495 -1.9361 38 1 1.2382 -5.3430 0.7468 39 1 0.5986 -4.8263 -0.8319 40 1 2.1420 -5.7087 -0.7425 41 1 0.4718 -2.4857 -0.2015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226037592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:04 Heat of formation + Delta-G solvation = -27.399642 kcal Electronic energy + Delta-G solvation = -22570.199789 eV Core-core repulsion = 19223.167169 eV Total energy + Delta-G solvation = -3347.032620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67636 -39.44088 -37.86916 -36.33689 -33.10840 -32.50594 -31.72285 -29.46384 -28.91423 -27.73443 -26.92776 -24.59575 -23.54317 -22.26232 -20.51903 -20.30336 -19.54908 -18.19871 -17.67901 -16.57181 -16.35862 -15.55645 -15.16314 -14.93523 -14.77788 -14.35601 -14.18576 -13.76742 -13.42240 -13.27934 -13.14820 -13.04186 -12.72138 -12.56970 -12.49039 -12.30850 -12.01066 -11.85858 -11.61646 -11.11163 -10.93190 -10.71720 -10.57085 -10.43040 -10.18067 -10.03233 -9.89151 -9.64698 -9.07980 -8.45119 -8.19411 -7.06184 -6.22645 -3.17981 0.59445 1.20443 2.27847 3.15306 3.47422 3.52201 3.62754 3.69662 3.92366 4.51267 4.53130 4.59453 4.77970 4.89026 4.96270 5.02259 5.10170 5.12931 5.24608 5.25449 5.29781 5.33869 5.46171 5.54006 5.57960 5.65193 5.72950 5.87092 5.98858 5.99704 6.14830 6.17913 6.23441 6.28247 6.37097 6.44522 6.64856 6.82261 6.87488 7.38656 7.42767 7.68510 8.40408 8.91642 9.73786 10.25197 11.14030 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.003316 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.973219 B = 8441.549581 C = 8873.771964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.400 3.600 3 O -0.470 6.470 4 C -0.222 4.222 5 C -0.020 4.020 6 C -0.219 4.219 7 C 0.177 3.823 8 O -0.293 6.293 9 C 0.066 3.934 10 H 0.082 0.918 11 C -0.126 4.126 12 C 0.144 3.856 13 N -0.599 5.599 14 C -0.345 4.345 15 H 0.069 0.931 16 C -0.023 4.023 17 N -0.913 5.913 18 Si 1.065 2.935 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.120 3.880 23 C -0.139 4.139 24 C -0.103 4.103 25 C -0.036 4.036 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.028 0.972 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 5.377 3.840 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.280 3.720 3 O -0.347 6.347 4 C -0.224 4.224 5 C -0.039 4.039 6 C -0.238 4.238 7 C 0.129 3.871 8 O -0.205 6.205 9 C 0.010 3.990 10 H 0.100 0.900 11 C -0.165 4.165 12 C 0.018 3.982 13 N -0.328 5.328 14 C -0.472 4.472 15 H 0.086 0.914 16 C -0.224 4.224 17 N -0.553 5.553 18 Si 0.894 3.106 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.006 4.006 23 C -0.140 4.140 24 C -0.160 4.160 25 C -0.054 4.054 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.694 4.767 3.405 19.590 hybrid contribution -1.143 1.184 0.283 1.670 sum -19.836 5.951 3.688 21.036 Atomic orbital electron populations 1.22230 0.94176 1.04649 1.04760 1.22312 0.91452 0.87632 0.70636 1.90540 1.72113 1.34437 1.37619 1.20298 0.94542 0.94605 1.12920 1.20908 0.92957 0.98103 0.91900 1.21156 1.01388 0.91944 1.09293 1.19304 0.91309 0.85447 0.91006 1.86097 1.22103 1.27684 1.84613 1.23738 0.76532 1.00245 0.98474 0.90019 1.22967 0.98216 0.95372 0.99897 1.21574 0.91038 0.98323 0.87219 1.44464 1.23264 1.51619 1.13455 1.19724 0.96662 1.41867 0.88908 0.91351 1.25753 0.93688 1.01097 1.01912 1.70830 1.37261 1.40682 1.06572 0.83517 0.75893 0.76662 0.74521 1.21021 1.22029 1.21930 1.21711 0.89826 0.94993 0.94062 1.19225 0.90452 0.96576 1.07750 1.20596 0.99441 0.93753 1.02206 1.21168 0.99534 0.90197 0.94527 0.89880 0.89048 0.88832 0.84895 0.84354 0.90212 0.90881 0.92012 0.95322 0.92010 0.95401 0.94413 0.91378 0.91688 0.90769 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 10.16 36.01 0.37 -0.98 16 2 C 0.40 4.45 7.21 -30.82 -0.22 4.22 16 3 O -0.47 -6.87 17.09 5.54 0.09 -6.78 16 4 C -0.22 -2.61 5.87 -105.06 -0.62 -3.23 16 5 C -0.02 -0.27 9.54 -39.50 -0.38 -0.65 16 6 C -0.22 -3.08 8.83 -39.87 -0.35 -3.43 16 7 C 0.18 2.52 6.66 -38.96 -0.26 2.27 16 8 O -0.29 -4.66 8.90 -18.68 -0.17 -4.82 16 9 C 0.07 1.14 2.74 -24.89 -0.07 1.07 16 10 H 0.08 1.30 6.21 -51.93 -0.32 0.98 16 11 C -0.13 -2.21 6.81 -24.58 -0.17 -2.38 16 12 C 0.14 3.25 5.25 -2.53 -0.01 3.23 16 13 N -0.60 -15.16 3.33 -170.06 -0.57 -15.73 16 14 C -0.34 -9.75 10.01 -15.06 -0.15 -9.90 16 15 H 0.07 1.94 8.00 -52.48 -0.42 1.52 16 16 C -0.02 -0.64 5.01 -17.43 -0.09 -0.73 16 17 N -0.91 -27.22 12.90 55.49 0.72 -26.51 16 18 Si 1.06 25.22 30.02 -169.99 -5.10 20.11 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.12 2.53 6.80 -3.05 -0.02 2.51 16 23 C -0.14 -1.66 5.89 -104.52 -0.62 -2.27 16 24 C -0.10 -1.01 9.79 36.01 0.35 -0.66 16 25 C -0.04 -0.37 9.05 -39.12 -0.35 -0.72 16 26 H 0.08 0.39 5.69 -51.93 -0.30 0.09 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.13 1.71 7.65 -52.49 -0.40 1.30 16 30 H 0.14 1.97 5.59 -52.49 -0.29 1.68 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.52 7.74 -51.93 -0.40 1.12 16 34 H 0.03 0.68 6.91 -51.93 -0.36 0.32 16 35 H 0.27 7.96 6.00 -40.82 -0.24 7.71 16 36 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 37 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.07 0.84 7.53 -51.93 -0.39 0.44 16 41 H 0.14 0.90 6.02 -52.48 -0.32 0.58 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -32.65 335.19 -8.16 -40.81 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.60 Total: -0.50 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.59 Total: -11.65 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.15 Total: -42.23 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.07 Total: -11.60 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.10 Total: 20.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.65 -8.16 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226037592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.411 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds