Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21297 * 119.99852 * 2 1 4 4 C 1.46858 * 120.00103 * 179.97438 * 2 1 3 5 5 C 1.40040 * 120.11213 * 185.38515 * 4 2 1 6 6 C 1.36590 * 120.00408 * 179.97438 * 5 4 2 7 7 C 1.39071 * 120.24641 * 0.02562 * 6 5 4 8 8 O 1.35659 * 119.88845 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99971 * 4.38602 * 8 7 6 10 10 H 1.09002 * 110.64055 * 33.48201 * 9 8 7 11 11 C 1.55151 * 110.72521 * 156.63098 * 9 8 7 12 12 C 1.54914 * 101.58589 * 153.86614 * 11 9 8 13 13 N 1.47420 * 104.82941 * 322.99107 * 12 11 9 14 14 C 1.36941 * 125.64674 * 204.09355 * 13 12 11 15 15 H 1.08005 * 119.99590 * 168.22146 * 14 13 12 16 16 C 1.38804 * 119.99923 * 348.22022 * 14 13 12 17 17 N 1.31615 * 119.99987 * 328.83307 * 16 14 13 18 18 Si 1.86803 * 119.99739 * 148.82849 * 16 14 13 19 19 H 1.48501 * 109.46934 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47474 * 300.00269 * 18 16 14 21 21 H 1.48499 * 109.46984 * 60.00544 * 18 16 14 22 22 C 1.47027 * 108.70719 * 24.35467 * 13 12 11 23 23 C 1.39084 * 120.22884 * 0.26907 * 7 6 5 24 24 C 1.50699 * 120.00588 * 179.70504 * 23 7 6 25 25 C 1.37647 * 119.98688 * 359.45684 * 23 7 6 26 26 H 1.08996 * 109.46907 * 185.24393 * 1 2 3 27 27 H 1.09000 * 109.47196 * 305.24058 * 1 2 3 28 28 H 1.08997 * 109.46913 * 65.24245 * 1 2 3 29 29 H 1.07993 * 120.00102 * 359.96332 * 5 4 2 30 30 H 1.07998 * 119.87248 * 180.02562 * 6 5 4 31 31 H 1.09001 * 111.00399 * 35.79078 * 11 9 8 32 32 H 1.09005 * 111.03649 * 271.95658 * 11 9 8 33 33 H 1.08996 * 110.36654 * 204.15487 * 12 11 9 34 34 H 1.08999 * 110.45719 * 81.87676 * 12 11 9 35 35 H 0.96999 * 120.00472 * 356.88916 * 17 16 14 36 36 H 1.09002 * 109.88120 * 118.12916 * 22 13 12 37 37 H 1.08993 * 109.88498 * 239.30091 * 22 13 12 38 38 H 1.09001 * 109.47144 * 90.00077 * 24 23 7 39 39 H 1.09004 * 109.47360 * 210.00404 * 24 23 7 40 40 H 1.09007 * 109.47404 * 330.00325 * 24 23 7 41 41 H 1.08004 * 120.12558 * 180.26789 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2718 0.0006 5 6 3.6371 -1.2772 0.1143 6 6 4.3178 -2.4614 0.1151 7 6 3.6300 -3.6648 0.0027 8 8 4.3133 -4.8367 0.0049 9 6 5.7238 -4.7649 0.2222 10 1 5.9670 -3.9463 0.8997 11 6 6.2639 -6.1114 0.7721 12 6 7.7378 -6.0729 0.2965 13 7 7.6887 -5.4384 -1.0333 14 6 8.6193 -5.5926 -2.0260 15 1 8.4052 -5.2441 -3.0256 16 6 9.8375 -6.1967 -1.7475 17 7 10.3743 -6.0751 -0.5519 18 14 10.7151 -7.1824 -3.0695 19 1 11.9865 -7.7212 -2.5232 20 1 9.8486 -8.3066 -3.5060 21 1 11.0076 -6.3034 -4.2301 22 6 6.4784 -4.6075 -1.1149 23 6 2.2443 -3.6709 -0.1169 24 6 1.5046 -4.9776 -0.2450 25 6 1.5483 -2.4833 -0.1131 26 1 -0.3633 -1.0233 0.0939 27 1 -0.3633 0.5930 0.8393 28 1 -0.3633 0.4304 -0.9332 29 1 4.1753 -0.3450 0.2011 30 1 5.3942 -2.4630 0.2033 31 1 5.7329 -6.9548 0.3307 32 1 6.2052 -6.1415 1.8601 33 1 8.1382 -7.0838 0.2199 34 1 8.3430 -5.4766 0.9793 35 1 9.9414 -5.5263 0.1206 36 1 6.7546 -3.5640 -1.2665 37 1 5.8487 -4.9495 -1.9361 38 1 1.2382 -5.3430 0.7468 39 1 0.5986 -4.8263 -0.8319 40 1 2.1420 -5.7087 -0.7425 41 1 0.4718 -2.4857 -0.2015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226037592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = -46.499372 kcal Electronic energy + Delta-G solvation = -22571.028015 eV Core-core repulsion = 19223.167169 eV Total energy + Delta-G solvation = -3347.860846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76067 -40.51348 -39.19490 -37.76023 -34.63003 -33.84126 -32.65257 -31.20727 -29.78935 -29.35583 -27.79369 -26.48363 -24.68607 -23.33359 -22.28063 -21.68058 -20.50187 -19.71466 -19.36642 -17.58357 -17.39756 -16.93864 -16.41040 -16.07826 -15.83520 -15.63273 -15.49163 -15.40083 -15.15277 -14.52077 -14.20849 -14.15993 -14.10760 -13.77129 -13.34420 -13.11864 -12.93743 -12.82090 -12.74871 -12.70362 -12.61383 -12.53081 -12.06263 -11.92924 -11.82638 -11.66319 -11.61817 -10.78624 -10.55896 -10.01263 -9.26259 -9.13758 -8.46995 -5.38435 -0.36626 0.25044 1.36755 1.55468 1.63248 1.82888 1.92842 2.58845 2.67435 3.09015 3.13205 3.36888 3.44916 3.63262 3.65929 3.70224 3.84820 4.08345 4.11892 4.16282 4.29844 4.35210 4.48952 4.57184 4.66339 4.68264 4.69100 4.78057 4.79019 4.87615 4.89980 4.93597 5.09274 5.13182 5.15684 5.25545 5.35043 5.41198 5.56160 5.66036 6.22528 6.23869 6.55101 6.78401 7.61153 8.15916 8.90084 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.003316 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.973219 B = 8441.549581 C = 8873.771964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.399 3.601 3 O -0.514 6.514 4 C -0.226 4.226 5 C -0.039 4.039 6 C -0.229 4.229 7 C 0.148 3.852 8 O -0.296 6.296 9 C 0.085 3.915 10 H 0.094 0.906 11 C -0.109 4.109 12 C 0.145 3.855 13 N -0.623 5.623 14 C -0.360 4.360 15 H 0.059 0.941 16 C -0.071 4.071 17 N -0.937 5.937 18 Si 1.117 2.883 19 H -0.288 1.288 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.119 3.881 23 C -0.138 4.138 24 C -0.102 4.102 25 C -0.019 4.019 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.034 0.966 34 H 0.016 0.984 35 H 0.257 0.743 36 H 0.020 0.980 37 H 0.029 0.971 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.797 5.004 3.821 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.282 3.718 3 O -0.394 6.394 4 C -0.227 4.227 5 C -0.057 4.057 6 C -0.248 4.248 7 C 0.101 3.899 8 O -0.208 6.208 9 C 0.028 3.972 10 H 0.112 0.888 11 C -0.147 4.147 12 C 0.020 3.980 13 N -0.352 5.352 14 C -0.488 4.488 15 H 0.077 0.923 16 C -0.268 4.268 17 N -0.580 5.580 18 Si 0.940 3.060 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.201 1.201 22 C -0.007 4.007 23 C -0.139 4.139 24 C -0.159 4.159 25 C -0.036 4.036 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.175 4.404 3.389 22.861 hybrid contribution -0.184 1.411 0.276 1.449 sum -22.359 5.815 3.665 23.391 Atomic orbital electron populations 1.22275 0.89947 1.06888 1.05937 1.22979 0.93615 0.86403 0.68790 1.90536 1.73443 1.35705 1.39748 1.20629 0.93982 0.96139 1.11956 1.20972 0.94257 0.97496 0.92994 1.21083 1.00923 0.92555 1.10244 1.19617 0.92453 0.84704 0.93084 1.86071 1.20722 1.28586 1.85393 1.23368 0.77404 1.00369 0.96023 0.88813 1.22831 0.94291 0.95672 1.01948 1.21512 0.94286 0.96146 0.86041 1.44722 1.23661 1.52859 1.13914 1.19962 0.97484 1.41877 0.89455 0.92306 1.27161 0.94755 1.01639 1.03226 1.70935 1.37930 1.41823 1.07266 0.82839 0.74812 0.75763 0.72567 1.21339 1.20587 1.20111 1.21774 0.88770 0.93723 0.96403 1.19627 0.89445 0.98372 1.06436 1.20664 0.99923 0.91947 1.03333 1.21604 1.01568 0.88417 0.92021 0.87081 0.87898 0.87412 0.85700 0.85646 0.89809 0.87352 0.94752 0.96633 0.93216 0.96208 0.95281 0.90034 0.88691 0.92637 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 10.16 71.24 0.72 -1.05 16 2 C 0.40 8.05 7.21 27.94 0.20 8.25 16 3 O -0.51 -14.83 17.09 -3.08 -0.05 -14.89 16 4 C -0.23 -4.87 5.87 -20.15 -0.12 -4.99 16 5 C -0.04 -1.03 9.54 22.32 0.21 -0.82 16 6 C -0.23 -6.53 8.83 22.08 0.20 -6.34 16 7 C 0.15 4.09 6.66 22.67 0.15 4.24 16 8 O -0.30 -9.15 8.90 -89.74 -0.80 -9.95 16 9 C 0.09 2.91 2.74 31.79 0.09 3.00 16 10 H 0.09 2.99 6.21 -2.39 -0.01 2.98 16 11 C -0.11 -3.76 6.81 31.99 0.22 -3.55 16 12 C 0.15 6.75 5.25 86.86 0.46 7.21 16 13 N -0.62 -32.59 3.33 -691.96 -2.31 -34.89 16 14 C -0.36 -21.00 10.01 84.03 0.84 -20.16 16 15 H 0.06 3.45 8.00 -2.91 -0.02 3.42 16 16 C -0.07 -4.13 5.01 84.86 0.43 -3.71 16 17 N -0.94 -57.55 12.90 21.65 0.28 -57.27 16 18 Si 1.12 51.51 30.02 68.60 2.06 53.57 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 C 0.12 5.17 6.80 86.73 0.59 5.76 16 23 C -0.14 -2.89 5.89 -19.80 -0.12 -3.01 16 24 C -0.10 -1.63 9.79 71.24 0.70 -0.94 16 25 C -0.02 -0.30 9.05 22.57 0.20 -0.10 16 26 H 0.11 0.36 5.69 -2.39 -0.01 0.35 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.13 3.41 7.65 -2.91 -0.02 3.39 16 30 H 0.13 3.77 5.59 -2.91 -0.02 3.76 16 31 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.03 1.75 7.74 -2.39 -0.02 1.73 16 34 H 0.02 0.77 6.91 -2.39 -0.02 0.76 16 35 H 0.26 15.90 6.00 -92.71 -0.56 15.34 16 36 H 0.02 0.89 7.82 -2.39 -0.02 0.87 16 37 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 0.95 8.09 -2.38 -0.02 0.94 16 40 H 0.05 1.12 7.53 -2.38 -0.02 1.10 16 41 H 0.19 1.22 6.02 -2.91 -0.02 1.20 16 Total: -1.00 -74.53 335.19 5.20 -69.33 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.25 Total: 10.30 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.77 Total: -16.20 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -2.03 Total: -92.17 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.85 Total: -24.83 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.06 Total: 53.57 kcal Total: -74.53 5.20 -69.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226037592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.831 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds