Wall clock time and date at job start Tue Mar 31 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21294 * 119.99928 * 2 1 4 4 C 1.46865 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.40045 * 120.10974 * 359.97318 * 4 2 1 6 6 C 1.36579 * 120.00313 * 179.76613 * 5 4 2 7 7 C 1.39076 * 120.24847 * 0.51655 * 6 5 4 8 8 O 1.35659 * 119.88959 * 179.76169 * 7 6 5 9 9 C 1.42901 * 117.00009 * 7.46916 * 8 7 6 10 10 H 1.09004 * 110.77769 * 320.91811 * 9 8 7 11 11 C 1.55152 * 110.72381 * 197.67970 * 9 8 7 12 12 C 1.55124 * 101.49111 * 205.96906 * 11 9 8 13 13 N 1.47433 * 104.71943 * 37.29414 * 12 11 9 14 14 C 1.36939 * 125.64604 * 155.81979 * 13 12 11 15 15 H 1.08000 * 119.99846 * 342.72517 * 14 13 12 16 16 C 1.38811 * 119.99463 * 163.00075 * 14 13 12 17 17 N 1.31619 * 119.99637 * 158.83043 * 16 14 13 18 18 Si 1.86794 * 120.00202 * 338.82634 * 16 14 13 19 19 H 1.48504 * 109.47333 * 87.67416 * 18 16 14 20 20 H 1.48503 * 109.47123 * 207.67138 * 18 16 14 21 21 H 1.48495 * 109.47276 * 327.67472 * 18 16 14 22 22 C 1.47023 * 108.69991 * 335.55306 * 13 12 11 23 23 C 1.39080 * 120.22697 * 359.48213 * 7 6 5 24 24 C 1.50704 * 120.00686 * 180.23620 * 23 7 6 25 25 C 1.37653 * 119.98826 * 0.25335 * 23 7 6 26 26 H 1.09006 * 109.46800 * 269.99802 * 1 2 3 27 27 H 1.09001 * 109.47465 * 29.99453 * 1 2 3 28 28 H 1.09000 * 109.47388 * 149.99727 * 1 2 3 29 29 H 1.08005 * 119.99519 * 0.02562 * 5 4 2 30 30 H 1.08003 * 119.87672 * 180.24875 * 6 5 4 31 31 H 1.09007 * 111.00188 * 324.21074 * 11 9 8 32 32 H 1.09005 * 111.00315 * 88.01737 * 11 9 8 33 33 H 1.09002 * 110.49790 * 278.45426 * 12 11 9 34 34 H 1.08992 * 110.34793 * 156.05691 * 12 11 9 35 35 H 0.97000 * 119.99828 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.87516 * 120.70569 * 22 13 12 37 37 H 1.09000 * 109.88125 * 241.70857 * 22 13 12 38 38 H 1.08996 * 109.47131 * 90.00149 * 24 23 7 39 39 H 1.09000 * 109.47130 * 209.99918 * 24 23 7 40 40 H 1.09002 * 109.47245 * 329.99926 * 24 23 7 41 41 H 1.08006 * 120.12196 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5435 -2.4860 -0.0005 6 6 2.2286 -3.6675 -0.0059 7 6 3.6193 -3.6710 -0.0006 8 8 4.2925 -4.8488 -0.0011 9 6 3.5190 -6.0380 -0.1726 10 1 2.5759 -5.9675 0.3695 11 6 4.3217 -7.2854 0.2822 12 6 3.6654 -8.4029 -0.5704 13 7 3.3863 -7.7668 -1.8709 14 6 3.2529 -8.4205 -3.0667 15 1 3.6186 -9.4311 -3.1735 16 6 2.6527 -7.7822 -4.1434 17 7 2.8807 -8.2041 -5.3691 18 14 1.5213 -6.3246 -3.8526 19 1 2.3232 -5.0753 -3.8147 20 1 0.5278 -6.2418 -4.9533 21 1 0.8133 -6.4978 -2.5588 22 6 3.2686 -6.3152 -1.6699 23 6 4.3225 -2.4710 -0.0006 24 6 5.8295 -2.4805 -0.0002 25 6 3.6416 -1.2746 -0.0006 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 0.4634 -2.4881 -0.0005 30 1 1.6883 -4.6027 -0.0099 31 1 5.3798 -7.1776 0.0433 32 1 4.1808 -7.4740 1.3465 33 1 2.7388 -8.7420 -0.1073 34 1 4.3549 -9.2376 -0.6967 35 1 2.4610 -7.7583 -6.1214 36 1 4.0137 -5.7960 -2.2728 37 1 2.2689 -5.9822 -1.9490 38 1 6.1931 -2.4830 -1.0277 39 1 6.1983 -1.5927 0.5136 40 1 6.1871 -3.3727 0.5139 41 1 4.1855 -0.3415 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226037593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:06 Heat of formation + Delta-G solvation = -15.656078 kcal Electronic energy + Delta-G solvation = -23045.259878 eV Core-core repulsion = 19698.736497 eV Total energy + Delta-G solvation = -3346.523381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67608 -39.45095 -37.91006 -36.35425 -33.31944 -32.45648 -31.05977 -30.01732 -29.40762 -28.26007 -26.71339 -24.63774 -23.46018 -22.53988 -20.82993 -20.31733 -19.51908 -18.21822 -17.14549 -16.51608 -16.46790 -16.15087 -15.18929 -15.00927 -14.71836 -14.36876 -14.29183 -13.91471 -13.51113 -13.27970 -13.13311 -12.87608 -12.65652 -12.52765 -12.43669 -12.35379 -12.16427 -11.95978 -11.71159 -11.31315 -11.25418 -11.08292 -10.78622 -10.68538 -10.23170 -9.94183 -9.87508 -9.37409 -9.04020 -8.79027 -8.17962 -7.18172 -6.02175 -3.33721 0.61508 1.23441 2.29908 3.13300 3.28147 3.33153 3.41137 3.66284 3.95359 4.44894 4.52611 4.64002 4.74106 4.86088 4.89892 5.02406 5.08392 5.11702 5.15725 5.17602 5.21990 5.32779 5.41437 5.53893 5.67988 5.68996 5.73934 5.76535 5.83397 6.02266 6.06054 6.15609 6.16665 6.21633 6.31922 6.39901 6.43665 6.61773 6.66449 7.39949 7.41181 7.56935 8.22847 8.72595 9.59508 10.04261 11.14258 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.004990 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.727816 B = 5609.817311 C = 6499.069495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.401 3.599 3 O -0.471 6.471 4 C -0.221 4.221 5 C -0.034 4.034 6 C -0.221 4.221 7 C 0.176 3.824 8 O -0.293 6.293 9 C 0.066 3.934 10 H 0.083 0.917 11 C -0.121 4.121 12 C 0.134 3.866 13 N -0.606 5.606 14 C -0.245 4.245 15 H 0.097 0.903 16 C 0.023 3.977 17 N -0.906 5.906 18 Si 0.887 3.113 19 H -0.286 1.286 20 H -0.301 1.301 21 H -0.277 1.277 22 C 0.094 3.906 23 C -0.136 4.136 24 C -0.104 4.104 25 C -0.022 4.022 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.264 0.736 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 11.552 14.639 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.281 3.719 3 O -0.348 6.348 4 C -0.223 4.223 5 C -0.053 4.053 6 C -0.239 4.239 7 C 0.128 3.872 8 O -0.204 6.204 9 C 0.010 3.990 10 H 0.101 0.899 11 C -0.159 4.159 12 C 0.009 3.991 13 N -0.335 5.335 14 C -0.372 4.372 15 H 0.115 0.885 16 C -0.176 4.176 17 N -0.550 5.550 18 Si 0.719 3.281 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.205 1.205 22 C -0.032 4.032 23 C -0.137 4.137 24 C -0.160 4.160 25 C -0.040 4.040 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.148 11.999 14.384 18.767 hybrid contribution -1.157 0.610 -0.091 1.311 sum -2.305 12.609 14.293 19.199 Atomic orbital electron populations 1.22241 0.94091 1.04908 1.04623 1.22308 0.91497 0.87544 0.70508 1.90522 1.72180 1.34404 1.37719 1.20302 0.94422 0.94601 1.12941 1.20964 0.99994 0.90868 0.93443 1.21106 0.93404 0.99974 1.09459 1.19260 0.90522 0.86203 0.91190 1.86090 1.36685 1.12437 1.85218 1.23675 0.94929 0.82529 0.97850 0.89892 1.22910 1.00782 0.92634 0.99623 1.21683 0.97266 0.94371 0.85804 1.44636 1.84883 0.99780 1.04172 1.18687 1.33711 1.00087 0.84717 0.88506 1.24921 0.99617 0.98127 0.94951 1.69817 1.44568 1.43111 0.97504 0.86961 0.82009 0.83354 0.75784 1.21290 1.22927 1.20453 1.22216 0.99792 0.88257 0.92888 1.19264 0.97000 0.89958 1.07496 1.20605 0.89883 1.02820 1.02725 1.21101 0.92872 0.97280 0.92739 0.88556 0.89522 0.89502 0.84843 0.84501 0.89737 0.90522 0.95213 0.92282 0.92586 0.93044 0.94622 0.91104 0.91664 0.90826 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 9.75 36.00 0.35 -1.27 16 2 C 0.40 4.81 7.22 -30.82 -0.22 4.59 16 3 O -0.47 -7.03 17.09 5.55 0.09 -6.94 16 4 C -0.22 -2.82 5.87 -105.06 -0.62 -3.44 16 5 C -0.03 -0.42 9.31 -39.50 -0.37 -0.78 16 6 C -0.22 -3.12 8.95 -39.87 -0.36 -3.47 16 7 C 0.18 2.67 6.58 -38.96 -0.26 2.42 16 8 O -0.29 -4.73 8.91 -18.68 -0.17 -4.89 16 9 C 0.07 1.10 2.81 -24.90 -0.07 1.03 16 10 H 0.08 1.23 6.03 -51.93 -0.31 0.92 16 11 C -0.12 -1.83 6.82 -24.47 -0.17 -1.99 16 12 C 0.13 2.46 7.24 -2.41 -0.02 2.44 16 13 N -0.61 -14.36 3.23 -169.93 -0.55 -14.91 16 14 C -0.25 -6.87 10.60 -15.06 -0.16 -7.03 16 15 H 0.10 2.84 8.06 -52.49 -0.42 2.41 16 16 C 0.02 0.65 5.46 -17.43 -0.10 0.56 16 17 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 18 Si 0.89 22.60 24.36 -169.99 -4.14 18.46 16 19 H -0.29 -7.22 7.05 56.52 0.40 -6.82 16 20 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 21 H -0.28 -6.74 6.47 56.52 0.37 -6.37 16 22 C 0.09 2.03 4.70 -3.07 -0.01 2.01 16 23 C -0.14 -1.89 5.89 -104.52 -0.62 -2.51 16 24 C -0.10 -1.22 9.79 36.01 0.35 -0.87 16 25 C -0.02 -0.29 9.24 -39.12 -0.36 -0.65 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.59 6.46 -51.93 -0.34 0.25 16 29 H 0.13 1.19 6.34 -52.48 -0.33 0.86 16 30 H 0.14 1.88 5.85 -52.48 -0.31 1.58 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.05 1.22 7.98 -51.93 -0.41 0.81 16 37 H 0.04 0.83 3.28 -51.93 -0.17 0.66 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 41 H 0.14 1.68 7.65 -52.48 -0.40 1.28 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -32.86 330.94 -7.26 -40.12 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.64 Total: -0.79 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.62 Total: -8.97 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.23 Total: -41.97 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.07 Total: -11.83 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.86 -7.26 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226037593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.464 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds