Wall clock time and date at job start Tue Mar 31 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21294 * 119.99928 * 2 1 4 4 C 1.46865 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.40045 * 120.10974 * 359.97318 * 4 2 1 6 6 C 1.36579 * 120.00313 * 179.76613 * 5 4 2 7 7 C 1.39076 * 120.24847 * 0.51655 * 6 5 4 8 8 O 1.35659 * 119.88959 * 179.76169 * 7 6 5 9 9 C 1.42901 * 117.00009 * 7.46916 * 8 7 6 10 10 H 1.09004 * 110.77769 * 320.91811 * 9 8 7 11 11 C 1.55152 * 110.72381 * 197.67970 * 9 8 7 12 12 C 1.55124 * 101.49111 * 205.96906 * 11 9 8 13 13 N 1.47433 * 104.71943 * 37.29414 * 12 11 9 14 14 C 1.36939 * 125.64604 * 155.81979 * 13 12 11 15 15 H 1.08000 * 119.99846 * 342.72517 * 14 13 12 16 16 C 1.38811 * 119.99463 * 163.00075 * 14 13 12 17 17 N 1.31619 * 119.99637 * 158.83043 * 16 14 13 18 18 Si 1.86794 * 120.00202 * 338.82634 * 16 14 13 19 19 H 1.48504 * 109.47333 * 87.67416 * 18 16 14 20 20 H 1.48503 * 109.47123 * 207.67138 * 18 16 14 21 21 H 1.48495 * 109.47276 * 327.67472 * 18 16 14 22 22 C 1.47023 * 108.69991 * 335.55306 * 13 12 11 23 23 C 1.39080 * 120.22697 * 359.48213 * 7 6 5 24 24 C 1.50704 * 120.00686 * 180.23620 * 23 7 6 25 25 C 1.37653 * 119.98826 * 0.25335 * 23 7 6 26 26 H 1.09006 * 109.46800 * 269.99802 * 1 2 3 27 27 H 1.09001 * 109.47465 * 29.99453 * 1 2 3 28 28 H 1.09000 * 109.47388 * 149.99727 * 1 2 3 29 29 H 1.08005 * 119.99519 * 0.02562 * 5 4 2 30 30 H 1.08003 * 119.87672 * 180.24875 * 6 5 4 31 31 H 1.09007 * 111.00188 * 324.21074 * 11 9 8 32 32 H 1.09005 * 111.00315 * 88.01737 * 11 9 8 33 33 H 1.09002 * 110.49790 * 278.45426 * 12 11 9 34 34 H 1.08992 * 110.34793 * 156.05691 * 12 11 9 35 35 H 0.97000 * 119.99828 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.87516 * 120.70569 * 22 13 12 37 37 H 1.09000 * 109.88125 * 241.70857 * 22 13 12 38 38 H 1.08996 * 109.47131 * 90.00149 * 24 23 7 39 39 H 1.09000 * 109.47130 * 209.99918 * 24 23 7 40 40 H 1.09002 * 109.47245 * 329.99926 * 24 23 7 41 41 H 1.08006 * 120.12196 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5435 -2.4860 -0.0005 6 6 2.2286 -3.6675 -0.0059 7 6 3.6193 -3.6710 -0.0006 8 8 4.2925 -4.8488 -0.0011 9 6 3.5190 -6.0380 -0.1726 10 1 2.5759 -5.9675 0.3695 11 6 4.3217 -7.2854 0.2822 12 6 3.6654 -8.4029 -0.5704 13 7 3.3863 -7.7668 -1.8709 14 6 3.2529 -8.4205 -3.0667 15 1 3.6186 -9.4311 -3.1735 16 6 2.6527 -7.7822 -4.1434 17 7 2.8807 -8.2041 -5.3691 18 14 1.5213 -6.3246 -3.8526 19 1 2.3232 -5.0753 -3.8147 20 1 0.5278 -6.2418 -4.9533 21 1 0.8133 -6.4978 -2.5588 22 6 3.2686 -6.3152 -1.6699 23 6 4.3225 -2.4710 -0.0006 24 6 5.8295 -2.4805 -0.0002 25 6 3.6416 -1.2746 -0.0006 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 0.4634 -2.4881 -0.0005 30 1 1.6883 -4.6027 -0.0099 31 1 5.3798 -7.1776 0.0433 32 1 4.1808 -7.4740 1.3465 33 1 2.7388 -8.7420 -0.1073 34 1 4.3549 -9.2376 -0.6967 35 1 2.4610 -7.7583 -6.1214 36 1 4.0137 -5.7960 -2.2728 37 1 2.2689 -5.9822 -1.9490 38 1 6.1931 -2.4830 -1.0277 39 1 6.1983 -1.5927 0.5136 40 1 6.1871 -3.3727 0.5139 41 1 4.1855 -0.3415 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226037593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:06 Heat of formation + Delta-G solvation = -36.224417 kcal Electronic energy + Delta-G solvation = -23046.151788 eV Core-core repulsion = 19698.736497 eV Total energy + Delta-G solvation = -3347.415291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76796 -40.52761 -39.18321 -37.69199 -34.61314 -34.14923 -32.07481 -31.57362 -30.38829 -29.74428 -27.68721 -26.40786 -24.62417 -23.62719 -22.42058 -21.63900 -20.48303 -19.35181 -19.08710 -17.99809 -17.54661 -17.30865 -16.46448 -16.04325 -15.91928 -15.65693 -15.55890 -15.31809 -15.00061 -14.46328 -14.37826 -14.22530 -14.11079 -13.78339 -13.62778 -13.15869 -13.10616 -13.04075 -12.96271 -12.81943 -12.70400 -12.54278 -12.37800 -12.07101 -11.84843 -11.50542 -11.19577 -10.89993 -10.81057 -10.03836 -9.26980 -9.15562 -8.23848 -5.50942 -0.38585 0.23876 1.23342 1.27190 1.33895 1.38866 1.95062 2.34195 2.66549 2.96039 3.10786 3.30033 3.47750 3.61482 3.65485 3.67033 3.90408 4.06710 4.13869 4.15683 4.31069 4.33841 4.45750 4.47316 4.62857 4.65625 4.68078 4.75532 4.77613 4.84707 4.91948 4.94757 5.02319 5.14755 5.20843 5.25092 5.28592 5.36472 5.60083 5.62322 6.04178 6.25309 6.51699 6.67132 7.46271 8.00048 8.96240 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.004990 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.727816 B = 5609.817311 C = 6499.069495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.402 3.598 3 O -0.508 6.508 4 C -0.228 4.228 5 C -0.027 4.027 6 C -0.232 4.232 7 C 0.149 3.851 8 O -0.299 6.299 9 C 0.078 3.922 10 H 0.110 0.890 11 C -0.107 4.107 12 C 0.126 3.874 13 N -0.626 5.626 14 C -0.235 4.235 15 H 0.069 0.931 16 C -0.039 4.039 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.288 1.288 20 H -0.306 1.306 21 H -0.254 1.254 22 C 0.090 3.910 23 C -0.145 4.145 24 C -0.103 4.103 25 C -0.032 4.032 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.170 0.830 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 12.785 17.323 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.284 3.716 3 O -0.388 6.388 4 C -0.229 4.229 5 C -0.045 4.045 6 C -0.250 4.250 7 C 0.102 3.898 8 O -0.211 6.211 9 C 0.021 3.979 10 H 0.128 0.872 11 C -0.144 4.144 12 C 0.002 3.998 13 N -0.355 5.355 14 C -0.364 4.364 15 H 0.087 0.913 16 C -0.234 4.234 17 N -0.602 5.602 18 Si 0.778 3.222 19 H -0.215 1.215 20 H -0.235 1.235 21 H -0.179 1.179 22 C -0.035 4.035 23 C -0.146 4.146 24 C -0.159 4.159 25 C -0.050 4.050 26 H 0.138 0.862 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.188 0.812 30 H 0.160 0.840 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.772 13.228 17.133 21.822 hybrid contribution -0.569 0.215 -0.896 1.083 sum -3.340 13.443 16.237 21.343 Atomic orbital electron populations 1.22284 0.90589 1.06061 1.06411 1.22847 0.93331 0.86472 0.68938 1.90517 1.73283 1.35403 1.39583 1.20613 0.94427 0.95604 1.12246 1.21316 1.01751 0.89687 0.91737 1.21296 0.93024 1.00979 1.09740 1.19545 0.91388 0.86074 0.92784 1.86081 1.36850 1.12616 1.85584 1.23569 0.96648 0.83454 0.94211 0.87204 1.22878 0.99894 0.90238 1.01434 1.21965 0.98427 0.95481 0.83925 1.44757 1.84705 1.01222 1.04776 1.18685 1.31929 0.99137 0.86635 0.91322 1.25584 1.01533 1.01527 0.94715 1.69949 1.46372 1.45490 0.98411 0.85974 0.79922 0.79922 0.76351 1.21480 1.23495 1.17914 1.22238 0.98201 0.86576 0.96465 1.19493 0.97918 0.89878 1.07311 1.20632 0.88990 1.03691 1.02634 1.21280 0.93624 0.97255 0.92847 0.86216 0.89050 0.87677 0.81246 0.83957 0.90188 0.86011 0.93190 0.92285 0.92854 0.96210 0.95442 0.91623 0.89673 0.91087 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 9.75 71.23 0.69 -1.73 16 2 C 0.40 8.68 7.22 27.94 0.20 8.88 16 3 O -0.51 -14.56 17.09 -3.07 -0.05 -14.61 16 4 C -0.23 -5.28 5.87 -20.15 -0.12 -5.40 16 5 C -0.03 -0.56 9.31 22.32 0.21 -0.36 16 6 C -0.23 -5.88 8.95 22.08 0.20 -5.68 16 7 C 0.15 4.26 6.58 22.67 0.15 4.41 16 8 O -0.30 -9.11 8.91 -89.75 -0.80 -9.91 16 9 C 0.08 2.37 2.81 31.78 0.09 2.45 16 10 H 0.11 2.79 6.03 -2.39 -0.01 2.78 16 11 C -0.11 -2.86 6.82 32.06 0.22 -2.64 16 12 C 0.13 4.34 7.24 86.93 0.63 4.97 16 13 N -0.63 -29.25 3.23 -691.54 -2.24 -31.49 16 14 C -0.24 -13.43 10.60 84.03 0.89 -12.54 16 15 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 16 C -0.04 -2.31 5.46 84.86 0.46 -1.85 16 17 N -0.96 -60.68 13.97 21.65 0.30 -60.38 16 18 Si 0.95 47.10 24.36 68.60 1.67 48.77 16 19 H -0.29 -14.19 7.05 99.48 0.70 -13.49 16 20 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 21 H -0.25 -11.46 6.47 99.48 0.64 -10.82 16 22 C 0.09 3.80 4.70 86.73 0.41 4.21 16 23 C -0.15 -3.86 5.89 -19.80 -0.12 -3.98 16 24 C -0.10 -2.34 9.79 71.24 0.70 -1.65 16 25 C -0.03 -0.80 9.24 22.57 0.21 -0.60 16 26 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 0.92 6.46 -2.39 -0.02 0.91 16 29 H 0.17 2.18 6.34 -2.91 -0.02 2.16 16 30 H 0.14 3.39 5.85 -2.91 -0.02 3.37 16 31 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.02 0.95 7.98 -2.38 -0.02 0.93 16 37 H 0.03 1.23 3.28 -2.39 -0.01 1.22 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.07 1.63 7.53 -2.39 -0.02 1.61 16 41 H 0.14 3.36 7.65 -2.91 -0.02 3.33 16 Total: -1.00 -74.06 330.94 4.67 -69.38 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.97 Total: 9.74 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.82 Total: -11.49 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -1.93 Total: -91.86 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.85 Total: -24.53 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.77 kcal Total: -74.06 4.67 -69.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226037593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.156 kcal (2) G-P(sol) polarization free energy of solvation -74.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds