Wall clock time and date at job start Tue Mar 31 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21301 * 119.99986 * 2 1 4 4 C 1.46785 * 120.00088 * 180.02562 * 2 1 3 5 5 C 1.40020 * 120.22475 * 0.02562 * 4 2 1 6 6 C 1.37675 * 119.88207 * 179.97438 * 5 4 2 7 7 C 1.50695 * 119.83243 * 180.02562 * 6 5 4 8 8 C 1.38623 * 120.33733 * 0.02562 * 6 5 4 9 9 C 1.38053 * 120.45651 * 359.71855 * 8 6 5 10 10 C 1.38688 * 120.10932 * 0.55591 * 9 8 6 11 11 O 1.35603 * 120.16790 * 179.72064 * 10 9 8 12 12 C 1.42892 * 117.00355 * 354.60853 * 11 10 9 13 13 H 1.09003 * 110.88597 * 326.52736 * 12 11 10 14 14 C 1.55156 * 111.00640 * 202.64963 * 12 11 10 15 15 C 1.54326 * 102.94130 * 206.38525 * 14 12 11 16 16 N 1.47019 * 107.27176 * 22.19208 * 15 14 12 17 17 C 1.36936 * 125.64474 * 181.02644 * 16 15 14 18 18 H 1.08002 * 119.99620 * 188.13807 * 17 16 15 19 19 C 1.38814 * 120.00165 * 8.13687 * 17 16 15 20 20 N 1.31620 * 119.99779 * 195.36814 * 19 17 16 21 21 Si 1.86798 * 120.00037 * 15.64536 * 19 17 16 22 22 H 1.48499 * 109.47190 * 173.53557 * 21 19 17 23 23 H 1.48506 * 109.47005 * 293.53888 * 21 19 17 24 24 H 1.48506 * 109.46900 * 53.53621 * 21 19 17 25 25 C 1.47419 * 108.70419 * 1.28358 * 16 15 14 26 26 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47280 * 299.99550 * 1 2 3 28 28 H 1.08997 * 109.47448 * 59.99931 * 1 2 3 29 29 H 1.08002 * 120.05944 * 359.95711 * 5 4 2 30 30 H 1.09001 * 109.47296 * 90.00363 * 7 6 5 31 31 H 1.09000 * 109.47253 * 210.00357 * 7 6 5 32 32 H 1.08998 * 109.47083 * 330.00260 * 7 6 5 33 33 H 1.08002 * 119.77461 * 180.02562 * 8 6 5 34 34 H 1.08008 * 119.94941 * 180.30399 * 9 8 6 35 35 H 1.08994 * 110.72132 * 88.01733 * 14 12 11 36 36 H 1.09005 * 110.71830 * 324.74372 * 14 12 11 37 37 H 1.08999 * 109.88001 * 262.76645 * 15 14 12 38 38 H 1.09004 * 109.87889 * 141.61317 * 15 14 12 39 39 H 0.97004 * 119.99816 * 5.43427 * 20 19 17 40 40 H 1.09006 * 110.36581 * 94.48450 * 25 16 15 41 41 H 1.08999 * 110.37080 * 216.80368 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5456 -2.4865 -0.0017 6 6 2.2411 -3.6747 -0.0027 7 6 1.4917 -4.9821 -0.0045 8 6 3.6274 -3.6745 -0.0022 9 6 4.3270 -2.4844 -0.0064 10 6 3.6454 -1.2766 0.0004 11 8 4.3314 -0.1070 0.0019 12 6 5.7534 -0.1890 0.1160 13 1 6.0451 -1.0339 0.7399 14 6 6.3449 1.1368 0.6633 15 6 7.7791 1.1367 0.0933 16 7 7.7821 0.2519 -1.0808 17 6 8.8705 -0.0357 -1.8605 18 1 8.7457 -0.5922 -2.7777 19 6 10.1340 0.3880 -1.4720 20 7 11.1240 0.3869 -2.3394 21 14 10.4312 0.9522 0.2837 22 1 11.8812 1.2018 0.4848 23 1 9.6736 2.2043 0.5362 24 1 9.9748 -0.1010 1.2260 25 6 6.4182 -0.2695 -1.2834 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.4656 -2.4919 -0.0014 30 1 1.3114 -5.2962 -1.0325 31 1 2.0828 -5.7405 0.5088 32 1 0.5387 -4.8552 0.5091 33 1 4.1638 -4.6119 -0.0034 34 1 5.4070 -2.4939 -0.0109 35 1 6.3630 1.1302 1.7531 36 1 5.7821 1.9929 0.2910 37 1 8.4757 0.7609 0.8427 38 1 8.0601 2.1473 -0.2032 39 1 10.9544 0.1659 -3.2686 40 1 5.8775 0.3502 -1.9989 41 1 6.4543 -1.3033 -1.6269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227086217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:43 Heat of formation + Delta-G solvation = -33.395223 kcal Electronic energy + Delta-G solvation = -23008.423212 eV Core-core repulsion = 19661.130605 eV Total energy + Delta-G solvation = -3347.292608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73910 -40.16256 -39.17718 -38.10031 -34.69859 -33.30180 -32.78980 -31.51345 -30.39609 -29.71384 -27.35362 -25.90495 -25.01046 -23.29563 -22.64977 -21.60190 -20.61024 -19.68069 -19.38167 -17.56341 -17.30682 -17.04333 -16.43416 -16.25916 -15.80692 -15.65586 -15.39206 -15.29630 -15.13279 -14.96326 -14.41586 -14.28901 -14.20515 -13.66523 -13.23429 -13.15036 -13.00311 -12.94844 -12.87592 -12.72845 -12.62691 -12.36905 -12.12042 -11.72617 -11.63325 -11.46371 -11.14078 -10.78003 -10.59162 -10.09817 -9.24302 -9.10279 -8.73284 -5.56899 -0.31585 0.34555 1.38221 1.47052 1.47874 1.69227 1.96551 2.50831 2.71635 3.01813 3.14136 3.25614 3.39814 3.62908 3.69053 3.79679 3.88547 4.01879 4.10294 4.16073 4.24938 4.35265 4.48357 4.53141 4.55170 4.68188 4.69888 4.75435 4.76733 4.81880 4.95216 4.99530 5.02397 5.09162 5.16018 5.28085 5.32738 5.40062 5.56925 5.78533 5.99195 6.32121 6.69140 6.71579 7.30655 7.96204 8.79227 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.004222 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.470609 B = 6630.425859 C = 7390.820946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.384 3.616 3 O -0.496 6.496 4 C -0.227 4.227 5 C -0.028 4.028 6 C -0.139 4.139 7 C -0.105 4.105 8 C -0.048 4.048 9 C -0.235 4.235 10 C 0.150 3.850 11 O -0.290 6.290 12 C 0.073 3.927 13 H 0.098 0.902 14 C -0.109 4.109 15 C 0.101 3.899 16 N -0.629 5.629 17 C -0.320 4.320 18 H 0.046 0.954 19 C -0.074 4.074 20 N -0.958 5.958 21 Si 1.108 2.892 22 H -0.308 1.308 23 H -0.252 1.252 24 H -0.276 1.276 25 C 0.122 3.878 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.179 0.821 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.248 0.752 40 H 0.022 0.978 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.463 -9.701 9.890 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.265 3.735 3 O -0.375 6.375 4 C -0.229 4.229 5 C -0.046 4.046 6 C -0.140 4.140 7 C -0.162 4.162 8 C -0.065 4.065 9 C -0.253 4.253 10 C 0.103 3.897 11 O -0.201 6.201 12 C 0.016 3.984 13 H 0.116 0.884 14 C -0.147 4.147 15 C -0.023 4.023 16 N -0.358 5.358 17 C -0.448 4.448 18 H 0.064 0.936 19 C -0.267 4.267 20 N -0.602 5.602 21 Si 0.934 3.066 22 H -0.237 1.237 23 H -0.177 1.177 24 H -0.203 1.203 25 C -0.004 4.004 26 H 0.131 0.869 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.196 0.804 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.021 -8.466 10.846 28.554 hybrid contribution -0.097 -0.626 -1.961 2.061 sum -25.118 -9.092 8.886 28.152 Atomic orbital electron populations 1.22243 0.89931 1.06781 1.05644 1.22986 0.93568 0.86722 0.70239 1.90603 1.73265 1.35483 1.38137 1.20314 0.90118 0.97443 1.15024 1.21625 1.01502 0.88732 0.92712 1.20186 0.93318 0.97030 1.03430 1.20783 1.00283 0.91836 1.03288 1.21420 0.94590 0.97465 0.93074 1.21460 1.00918 0.92552 1.10389 1.19786 0.91957 0.85383 0.92562 1.86260 1.19401 1.28372 1.86069 1.23695 0.77551 1.00355 0.96797 0.88407 1.22613 0.93368 0.96522 1.02183 1.22198 0.96698 0.94438 0.88957 1.44708 1.05194 1.53526 1.32339 1.20068 0.87114 1.34986 1.02635 0.93555 1.27189 0.90807 0.99356 1.09350 1.71003 1.33933 1.51702 1.03536 0.83423 0.73931 0.78008 0.71202 1.23686 1.17726 1.20331 1.22041 0.85459 0.97327 0.95590 0.86927 0.87813 0.88182 0.80394 0.90419 0.90854 0.89521 0.83348 0.85584 0.87074 0.89754 0.94153 0.93790 0.94288 0.95979 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 10.19 71.24 0.73 -1.66 16 2 C 0.38 9.63 7.22 27.92 0.20 9.83 16 3 O -0.50 -17.60 15.91 17.85 0.28 -17.32 16 4 C -0.23 -5.62 5.88 -20.07 -0.12 -5.74 16 5 C -0.03 -0.45 9.08 22.57 0.20 -0.24 16 6 C -0.14 -2.17 5.87 -19.91 -0.12 -2.29 16 7 C -0.11 -0.86 10.00 71.23 0.71 -0.15 16 8 C -0.05 -0.95 9.68 22.32 0.22 -0.73 16 9 C -0.23 -6.36 8.91 22.33 0.20 -6.16 16 10 C 0.15 4.62 6.70 22.92 0.15 4.77 16 11 O -0.29 -10.55 8.02 -68.19 -0.55 -11.10 16 12 C 0.07 2.67 2.81 32.06 0.09 2.76 16 13 H 0.10 3.27 6.30 -2.39 -0.02 3.26 16 14 C -0.11 -3.88 6.68 31.78 0.21 -3.66 16 15 C 0.10 4.43 4.63 86.73 0.40 4.84 16 16 N -0.63 -32.34 3.34 -691.55 -2.31 -34.65 16 17 C -0.32 -19.37 10.56 84.03 0.89 -18.48 16 18 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 19 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 20 N -0.96 -62.97 13.70 21.65 0.30 -62.68 16 21 Si 1.11 54.18 24.52 68.60 1.68 55.86 16 22 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 23 H -0.25 -10.95 5.48 99.48 0.55 -10.41 16 24 H -0.28 -12.44 6.76 99.48 0.67 -11.77 16 25 C 0.12 5.37 6.83 86.93 0.59 5.96 16 26 H 0.11 0.62 5.60 -2.38 -0.01 0.60 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.18 1.21 5.93 -2.91 -0.02 1.19 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 32 H 0.09 0.39 8.08 -2.39 -0.02 0.37 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.13 3.65 5.60 -2.91 -0.02 3.64 16 35 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.04 1.77 3.75 -2.39 -0.01 1.76 16 38 H 0.04 2.01 6.73 -2.39 -0.02 1.99 16 39 H 0.25 16.40 8.73 -92.71 -0.81 15.59 16 40 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.05 2.03 7.74 -2.39 -0.02 2.01 16 Total: -1.00 -80.74 326.88 5.04 -75.69 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.81 Total: 9.21 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.83 Total: -15.02 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -2.01 Total: -97.33 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.26 Total: -28.41 kcal Atomic # 14 Polarization: 54.18 SS G_CDS: 1.68 Total: 55.86 kcal Total: -80.74 5.04 -75.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227086217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.298 kcal (2) G-P(sol) polarization free energy of solvation -80.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds