Wall clock time and date at job start Tue Mar 31 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21303 * 120.00057 * 2 1 4 4 C 1.46785 * 120.00143 * 180.02562 * 2 1 3 5 5 C 1.40019 * 120.21851 * 359.97438 * 4 2 1 6 6 C 1.37676 * 119.87711 * 180.02562 * 5 4 2 7 7 C 1.38630 * 120.33943 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.77179 * 179.97438 * 7 6 5 9 9 C 1.38053 * 120.45731 * 359.67803 * 7 6 5 10 10 C 1.38700 * 120.10439 * 0.59558 * 9 7 6 11 11 O 1.35599 * 120.16889 * 179.69649 * 10 9 7 12 12 C 1.42902 * 116.99970 * 354.58038 * 11 10 9 13 13 H 1.09003 * 110.64001 * 321.75197 * 12 11 10 14 14 C 1.55157 * 110.72206 * 198.41299 * 12 11 10 15 15 C 1.55131 * 101.48514 * 205.96908 * 14 12 11 16 16 N 1.47422 * 104.72394 * 37.29484 * 15 14 12 17 17 C 1.36937 * 125.64585 * 155.81399 * 16 15 14 18 18 H 1.08002 * 119.99875 * 209.88110 * 17 16 15 19 19 C 1.38806 * 119.99872 * 29.88609 * 17 16 15 20 20 N 1.31628 * 119.99519 * 200.93493 * 19 17 16 21 21 Si 1.86796 * 120.00498 * 20.92881 * 19 17 16 22 22 H 1.48498 * 109.47500 * 274.46895 * 21 19 17 23 23 H 1.48506 * 109.46574 * 34.46941 * 21 19 17 24 24 H 1.48505 * 109.47339 * 154.46391 * 21 19 17 25 25 C 1.47024 * 108.70129 * 335.55176 * 16 15 14 26 26 H 1.08994 * 109.46696 * 269.99663 * 1 2 3 27 27 H 1.09004 * 109.46906 * 30.00064 * 1 2 3 28 28 H 1.09002 * 109.47095 * 149.99704 * 1 2 3 29 29 H 1.07998 * 120.06491 * 0.02562 * 5 4 2 30 30 H 1.08005 * 119.83388 * 179.97438 * 6 5 4 31 31 H 1.08992 * 109.46792 * 90.00433 * 8 7 6 32 32 H 1.08994 * 109.46695 * 210.00347 * 8 7 6 33 33 H 1.08995 * 109.47267 * 329.99873 * 8 7 6 34 34 H 1.07994 * 119.94974 * 180.32255 * 9 7 6 35 35 H 1.08998 * 110.99796 * 324.20870 * 14 12 11 36 36 H 1.08995 * 111.00138 * 88.01968 * 14 12 11 37 37 H 1.08994 * 110.49389 * 278.44988 * 15 14 12 38 38 H 1.09001 * 110.33630 * 156.05950 * 15 14 12 39 39 H 0.97004 * 119.99815 * 179.97438 * 20 19 17 40 40 H 1.09008 * 109.88252 * 120.70555 * 25 16 15 41 41 H 1.08996 * 109.88226 * 241.71365 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2410 -1.2712 -0.0006 5 6 1.5456 -2.4865 -0.0006 6 6 2.2411 -3.6746 -0.0006 7 6 3.6274 -3.6745 0.0000 8 6 4.3758 -4.9826 0.0005 9 6 4.3271 -2.4845 -0.0062 10 6 3.6454 -1.2766 -0.0005 11 8 4.3314 -0.1069 -0.0003 12 6 5.7535 -0.1889 0.1141 13 1 6.0382 -0.9813 0.8064 14 6 6.3479 1.1736 0.5586 15 6 7.7841 1.0881 -0.0216 16 7 7.6252 0.3985 -1.3149 17 6 8.4800 0.4939 -2.3804 18 1 8.1027 0.3863 -3.3867 19 6 9.8313 0.7290 -2.1673 20 7 10.5739 1.2234 -3.1351 21 14 10.5959 0.3438 -0.5071 22 1 10.4082 1.5007 0.4048 23 1 9.9404 -0.8556 0.0734 24 1 12.0471 0.0799 -0.6796 25 6 6.4005 -0.4136 -1.2688 26 1 -0.3632 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 0.4656 -2.4918 -0.0006 30 1 1.7040 -4.6116 -0.0002 31 1 4.5566 -5.2981 -1.0269 32 1 5.3284 -4.8559 0.5148 33 1 3.7836 -5.7398 0.5143 34 1 5.4070 -2.4940 -0.0110 35 1 5.7941 2.0033 0.1193 36 1 6.3709 1.2538 1.6454 37 1 8.4291 0.5099 0.6399 38 1 8.1919 2.0876 -0.1722 39 1 11.5182 1.3880 -2.9861 40 1 5.7152 -0.0959 -2.0547 41 1 6.6491 -1.4670 -1.3975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227115075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:09 Heat of formation + Delta-G solvation = -22.985001 kcal Electronic energy + Delta-G solvation = -23101.209693 eV Core-core repulsion = 19754.368506 eV Total energy + Delta-G solvation = -3346.841187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63061 -38.83945 -38.00005 -36.44493 -33.18895 -32.40603 -30.51652 -29.97260 -29.49639 -28.24814 -27.07660 -24.44773 -22.86365 -22.28576 -21.04836 -20.19412 -19.80854 -17.74192 -17.07886 -16.41675 -16.14645 -15.64321 -15.11694 -14.86112 -14.57612 -14.33326 -14.29321 -14.04041 -13.73792 -13.41396 -13.29087 -12.68759 -12.42678 -12.30986 -12.27919 -12.21442 -11.99834 -11.76291 -11.61961 -11.45431 -11.34037 -10.98221 -10.66669 -10.35034 -10.23713 -10.11806 -9.59473 -9.55585 -8.95888 -8.63869 -8.20440 -6.97555 -6.01328 -3.39775 0.64398 1.34782 2.44452 3.24435 3.32133 3.43688 3.47452 3.67683 4.05639 4.50576 4.58867 4.60649 4.85149 4.94232 4.97796 5.02334 5.06952 5.21228 5.24465 5.27742 5.31001 5.36584 5.41885 5.43562 5.49393 5.62497 5.76221 5.84353 5.90713 5.98606 6.08825 6.20790 6.23612 6.38904 6.40662 6.50676 6.57625 6.70283 6.70911 7.54461 7.69212 7.77198 8.28723 8.79620 9.62666 10.14653 11.14735 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.004559 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.079364 B = 6140.762864 C = 6998.357853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.388 3.612 3 O -0.439 6.439 4 C -0.222 4.222 5 C -0.035 4.035 6 C -0.181 4.181 7 C -0.013 4.013 8 C -0.122 4.122 9 C -0.225 4.225 10 C 0.200 3.800 11 O -0.271 6.271 12 C 0.062 3.938 13 H 0.079 0.921 14 C -0.120 4.120 15 C 0.118 3.882 16 N -0.602 5.602 17 C -0.248 4.248 18 H 0.087 0.913 19 C 0.032 3.968 20 N -0.903 5.903 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.276 1.276 24 H -0.299 1.299 25 C 0.115 3.885 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.265 0.735 40 H 0.044 0.956 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.433 -10.608 9.727 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.265 3.735 3 O -0.314 6.314 4 C -0.224 4.224 5 C -0.054 4.054 6 C -0.199 4.199 7 C -0.013 4.013 8 C -0.179 4.179 9 C -0.244 4.244 10 C 0.151 3.849 11 O -0.181 6.181 12 C 0.006 3.994 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.007 4.007 16 N -0.331 5.331 17 C -0.375 4.375 18 H 0.105 0.895 19 C -0.168 4.168 20 N -0.545 5.545 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.227 1.227 25 C -0.011 4.011 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.945 -9.767 9.559 23.360 hybrid contribution 0.731 -0.607 0.863 1.284 sum -18.214 -10.374 10.422 23.409 Atomic orbital electron populations 1.22213 0.94333 1.04545 1.04305 1.22147 0.91162 0.87658 0.72528 1.90629 1.71736 1.33805 1.35194 1.19922 0.90825 0.95878 1.15755 1.21222 0.99664 0.90662 0.93815 1.20830 0.93409 0.98111 1.07589 1.19959 0.93794 0.94887 0.92659 1.20920 1.00234 0.93684 1.03040 1.21343 1.01115 0.91400 1.10507 1.19336 0.90806 0.85702 0.89023 1.86346 1.20282 1.26618 1.84838 1.23735 0.77026 1.00008 0.98672 0.90292 1.22879 0.96977 0.95726 1.00238 1.21991 0.93173 0.97531 0.88004 1.44584 1.25665 1.49853 1.12954 1.18574 0.87134 1.45995 0.85773 0.89531 1.25288 0.95783 0.98775 0.96936 1.69836 1.07235 1.44334 1.33102 0.86871 0.77693 0.79233 0.85109 1.20903 1.20138 1.22658 1.21893 0.90251 0.95167 0.93784 0.88920 0.89645 0.89906 0.84657 0.85566 0.90310 0.91065 0.91129 0.84380 0.89474 0.90866 0.95741 0.91641 0.92519 0.93760 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 9.75 36.01 0.35 -1.27 16 2 C 0.39 5.24 7.22 -30.85 -0.22 5.01 16 3 O -0.44 -7.90 15.91 -16.37 -0.26 -8.16 16 4 C -0.22 -2.96 5.88 -104.95 -0.62 -3.58 16 5 C -0.04 -0.35 9.36 -39.12 -0.37 -0.71 16 6 C -0.18 -1.74 9.67 -39.64 -0.38 -2.12 16 7 C -0.01 -0.14 5.88 -104.54 -0.62 -0.76 16 8 C -0.12 -1.05 10.00 36.01 0.36 -0.69 16 9 C -0.23 -3.11 8.40 -39.48 -0.33 -3.44 16 10 C 0.20 3.13 6.64 -38.58 -0.26 2.87 16 11 O -0.27 -4.93 7.95 -40.40 -0.32 -5.25 16 12 C 0.06 1.12 2.77 -24.90 -0.07 1.05 16 13 H 0.08 1.28 6.59 -51.93 -0.34 0.94 16 14 C -0.12 -2.20 6.82 -24.46 -0.17 -2.37 16 15 C 0.12 2.61 4.87 -2.41 -0.01 2.60 16 16 N -0.60 -15.07 3.03 -169.94 -0.52 -15.58 16 17 C -0.25 -7.17 10.51 -15.06 -0.16 -7.33 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.03 0.95 5.43 -17.43 -0.09 0.85 16 20 N -0.90 -27.92 13.97 55.49 0.78 -27.15 16 21 Si 0.88 22.49 24.55 -169.99 -4.17 18.31 16 22 H -0.28 -6.93 6.98 56.52 0.39 -6.54 16 23 H -0.28 -6.90 6.98 56.52 0.39 -6.51 16 24 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 25 C 0.11 2.43 6.50 -3.06 -0.02 2.41 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.48 6.46 -51.93 -0.34 0.15 16 29 H 0.14 0.84 6.36 -52.49 -0.33 0.51 16 30 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.14 1.95 5.31 -52.49 -0.28 1.67 16 35 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.55 5.50 -51.93 -0.29 0.27 16 38 H 0.07 1.51 7.85 -51.93 -0.41 1.10 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.04 0.99 8.06 -51.92 -0.42 0.57 16 41 H 0.04 0.72 7.42 -51.93 -0.39 0.34 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -34.29 331.02 -7.84 -42.13 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.74 Total: -1.82 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.60 Total: -7.48 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.26 Total: -42.73 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.58 Total: -13.41 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.17 Total: 18.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.29 -7.84 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227115075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.145 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds