Wall clock time and date at job start Tue Mar 31 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21303 * 120.00057 * 2 1 4 4 C 1.46785 * 120.00143 * 180.02562 * 2 1 3 5 5 C 1.40019 * 120.21851 * 359.97438 * 4 2 1 6 6 C 1.37676 * 119.87711 * 180.02562 * 5 4 2 7 7 C 1.38630 * 120.33943 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.77179 * 179.97438 * 7 6 5 9 9 C 1.38053 * 120.45731 * 359.67803 * 7 6 5 10 10 C 1.38700 * 120.10439 * 0.59558 * 9 7 6 11 11 O 1.35599 * 120.16889 * 179.69649 * 10 9 7 12 12 C 1.42902 * 116.99970 * 354.58038 * 11 10 9 13 13 H 1.09003 * 110.64001 * 321.75197 * 12 11 10 14 14 C 1.55157 * 110.72206 * 198.41299 * 12 11 10 15 15 C 1.55131 * 101.48514 * 205.96908 * 14 12 11 16 16 N 1.47422 * 104.72394 * 37.29484 * 15 14 12 17 17 C 1.36937 * 125.64585 * 155.81399 * 16 15 14 18 18 H 1.08002 * 119.99875 * 209.88110 * 17 16 15 19 19 C 1.38806 * 119.99872 * 29.88609 * 17 16 15 20 20 N 1.31628 * 119.99519 * 200.93493 * 19 17 16 21 21 Si 1.86796 * 120.00498 * 20.92881 * 19 17 16 22 22 H 1.48498 * 109.47500 * 274.46895 * 21 19 17 23 23 H 1.48506 * 109.46574 * 34.46941 * 21 19 17 24 24 H 1.48505 * 109.47339 * 154.46391 * 21 19 17 25 25 C 1.47024 * 108.70129 * 335.55176 * 16 15 14 26 26 H 1.08994 * 109.46696 * 269.99663 * 1 2 3 27 27 H 1.09004 * 109.46906 * 30.00064 * 1 2 3 28 28 H 1.09002 * 109.47095 * 149.99704 * 1 2 3 29 29 H 1.07998 * 120.06491 * 0.02562 * 5 4 2 30 30 H 1.08005 * 119.83388 * 179.97438 * 6 5 4 31 31 H 1.08992 * 109.46792 * 90.00433 * 8 7 6 32 32 H 1.08994 * 109.46695 * 210.00347 * 8 7 6 33 33 H 1.08995 * 109.47267 * 329.99873 * 8 7 6 34 34 H 1.07994 * 119.94974 * 180.32255 * 9 7 6 35 35 H 1.08998 * 110.99796 * 324.20870 * 14 12 11 36 36 H 1.08995 * 111.00138 * 88.01968 * 14 12 11 37 37 H 1.08994 * 110.49389 * 278.44988 * 15 14 12 38 38 H 1.09001 * 110.33630 * 156.05950 * 15 14 12 39 39 H 0.97004 * 119.99815 * 179.97438 * 20 19 17 40 40 H 1.09008 * 109.88252 * 120.70555 * 25 16 15 41 41 H 1.08996 * 109.88226 * 241.71365 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2410 -1.2712 -0.0006 5 6 1.5456 -2.4865 -0.0006 6 6 2.2411 -3.6746 -0.0006 7 6 3.6274 -3.6745 0.0000 8 6 4.3758 -4.9826 0.0005 9 6 4.3271 -2.4845 -0.0062 10 6 3.6454 -1.2766 -0.0005 11 8 4.3314 -0.1069 -0.0003 12 6 5.7535 -0.1889 0.1141 13 1 6.0382 -0.9813 0.8064 14 6 6.3479 1.1736 0.5586 15 6 7.7841 1.0881 -0.0216 16 7 7.6252 0.3985 -1.3149 17 6 8.4800 0.4939 -2.3804 18 1 8.1027 0.3863 -3.3867 19 6 9.8313 0.7290 -2.1673 20 7 10.5739 1.2234 -3.1351 21 14 10.5959 0.3438 -0.5071 22 1 10.4082 1.5007 0.4048 23 1 9.9404 -0.8556 0.0734 24 1 12.0471 0.0799 -0.6796 25 6 6.4005 -0.4136 -1.2688 26 1 -0.3632 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 0.4656 -2.4918 -0.0006 30 1 1.7040 -4.6116 -0.0002 31 1 4.5566 -5.2981 -1.0269 32 1 5.3284 -4.8559 0.5148 33 1 3.7836 -5.7398 0.5143 34 1 5.4070 -2.4940 -0.0110 35 1 5.7941 2.0033 0.1193 36 1 6.3709 1.2538 1.6454 37 1 8.4291 0.5099 0.6399 38 1 8.1919 2.0876 -0.1722 39 1 11.5182 1.3880 -2.9861 40 1 5.7152 -0.0959 -2.0547 41 1 6.6491 -1.4670 -1.3975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227115075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:08 Heat of formation + Delta-G solvation = -44.292252 kcal Electronic energy + Delta-G solvation = -23102.133645 eV Core-core repulsion = 19754.368506 eV Total energy + Delta-G solvation = -3347.765138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72440 -40.09898 -39.11909 -37.94477 -34.58851 -33.99984 -31.93958 -30.97286 -30.70146 -29.83366 -27.96664 -26.35430 -23.84070 -23.37508 -22.74246 -21.69750 -20.82478 -19.14874 -18.84329 -17.49689 -17.37697 -17.15012 -16.68187 -16.07313 -15.72893 -15.67502 -15.31964 -15.13878 -14.98391 -14.82957 -14.37565 -14.19703 -14.03979 -13.95144 -13.22507 -13.07287 -13.00647 -12.96222 -12.88311 -12.71487 -12.67259 -12.40045 -12.26670 -12.12830 -11.81328 -11.69203 -11.58950 -10.82461 -10.57137 -9.86153 -9.23051 -9.04677 -8.28511 -5.66168 -0.28135 0.42606 1.28510 1.35150 1.46389 1.50806 2.02485 2.35874 2.77027 2.93448 3.19259 3.23023 3.47614 3.64502 3.75672 3.80977 3.87920 4.10135 4.20271 4.23787 4.29806 4.35869 4.54301 4.57089 4.65714 4.70199 4.71775 4.78622 4.80247 4.81545 4.87223 4.90080 5.06206 5.10771 5.22601 5.26965 5.39100 5.56572 5.65459 5.82553 6.02252 6.36545 6.64675 6.73868 7.39916 7.99907 8.91631 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.004559 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.079364 B = 6140.762864 C = 6998.357853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.382 3.618 3 O -0.501 6.501 4 C -0.243 4.243 5 C -0.020 4.020 6 C -0.172 4.172 7 C -0.015 4.015 8 C -0.122 4.122 9 C -0.244 4.244 10 C 0.159 3.841 11 O -0.293 6.293 12 C 0.078 3.922 13 H 0.101 0.899 14 C -0.110 4.110 15 C 0.112 3.888 16 N -0.621 5.621 17 C -0.253 4.253 18 H 0.045 0.955 19 C -0.021 4.021 20 N -0.949 5.949 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.298 1.298 25 C 0.117 3.883 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.181 0.819 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.036 0.964 38 H 0.051 0.949 39 H 0.268 0.732 40 H 0.021 0.979 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.071 -13.293 12.405 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.263 3.737 3 O -0.380 6.380 4 C -0.244 4.244 5 C -0.037 4.037 6 C -0.190 4.190 7 C -0.015 4.015 8 C -0.179 4.179 9 C -0.262 4.262 10 C 0.112 3.888 11 O -0.204 6.204 12 C 0.021 3.979 13 H 0.119 0.881 14 C -0.148 4.148 15 C -0.012 4.012 16 N -0.349 5.349 17 C -0.382 4.382 18 H 0.063 0.937 19 C -0.217 4.217 20 N -0.594 5.594 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.226 1.226 25 C -0.008 4.008 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.198 0.802 30 H 0.184 0.816 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.634 -12.482 12.259 27.823 hybrid contribution 1.379 0.117 -0.073 1.386 sum -20.255 -12.364 12.186 26.677 Atomic orbital electron populations 1.22238 0.89934 1.06086 1.06203 1.23030 0.93599 0.86824 0.70216 1.90608 1.73365 1.35635 1.38344 1.20317 0.90155 0.97521 1.16449 1.21729 1.01737 0.89069 0.91206 1.21344 0.92759 0.99709 1.05163 1.20355 0.95000 0.94821 0.91325 1.20993 1.00275 0.92970 1.03612 1.21362 1.00745 0.92071 1.12062 1.19807 0.92003 0.85363 0.91608 1.86313 1.19591 1.28524 1.85994 1.23475 0.77698 1.00266 0.96464 0.88114 1.22802 0.94188 0.95602 1.02210 1.22101 0.95762 0.96490 0.86831 1.44638 1.25848 1.51310 1.13094 1.18421 0.88224 1.45866 0.85654 0.93740 1.25944 0.96016 0.98553 1.01189 1.69965 1.07645 1.45939 1.35805 0.85799 0.76391 0.79827 0.80454 1.18902 1.18911 1.22592 1.21901 0.88556 0.94686 0.95701 0.86530 0.89833 0.86640 0.80211 0.81609 0.89882 0.91547 0.88421 0.85601 0.90719 0.87078 0.94614 0.93068 0.92339 0.96124 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 9.75 71.24 0.69 -1.82 16 2 C 0.38 9.98 7.22 27.92 0.20 10.19 16 3 O -0.50 -18.60 15.91 17.85 0.28 -18.32 16 4 C -0.24 -6.12 5.88 -20.08 -0.12 -6.24 16 5 C -0.02 -0.30 9.36 22.57 0.21 -0.09 16 6 C -0.17 -2.51 9.67 22.23 0.21 -2.29 16 7 C -0.01 -0.29 5.88 -19.81 -0.12 -0.41 16 8 C -0.12 -1.73 10.00 71.24 0.71 -1.02 16 9 C -0.24 -6.59 8.40 22.34 0.19 -6.40 16 10 C 0.16 4.98 6.64 22.92 0.15 5.14 16 11 O -0.29 -10.97 7.95 -68.14 -0.54 -11.51 16 12 C 0.08 2.83 2.77 31.78 0.09 2.92 16 13 H 0.10 3.20 6.59 -2.39 -0.02 3.18 16 14 C -0.11 -4.00 6.82 32.06 0.22 -3.78 16 15 C 0.11 4.95 4.87 86.93 0.42 5.37 16 16 N -0.62 -32.00 3.03 -691.55 -2.10 -34.10 16 17 C -0.25 -15.40 10.51 84.03 0.88 -14.52 16 18 H 0.04 2.99 8.06 -2.91 -0.02 2.97 16 19 C -0.02 -1.24 5.43 84.86 0.46 -0.78 16 20 N -0.95 -60.86 13.97 21.65 0.30 -60.56 16 21 Si 0.95 46.77 24.55 68.60 1.68 48.46 16 22 H -0.26 -12.13 6.98 99.48 0.69 -11.44 16 23 H -0.26 -12.44 6.98 99.48 0.69 -11.75 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 25 C 0.12 5.15 6.50 86.73 0.56 5.72 16 26 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.12 0.76 6.46 -2.39 -0.02 0.74 16 29 H 0.18 1.07 6.36 -2.91 -0.02 1.05 16 30 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.10 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.13 3.58 5.31 -2.91 -0.02 3.56 16 35 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.04 1.52 5.50 -2.39 -0.01 1.51 16 38 H 0.05 2.37 7.85 -2.39 -0.02 2.35 16 39 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.02 0.99 8.06 -2.38 -0.02 0.97 16 41 H 0.04 1.71 7.42 -2.39 -0.02 1.70 16 Total: -1.00 -80.85 331.02 5.42 -75.43 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.01 Total: 8.62 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.78 Total: -8.02 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -1.80 Total: -94.66 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.26 Total: -29.83 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.68 Total: 48.46 kcal Total: -80.85 5.42 -75.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227115075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.139 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds