Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21300 * 119.99850 * 2 1 4 4 C 1.46786 * 119.99741 * 180.02562 * 2 1 3 5 5 C 1.40015 * 120.22805 * 0.22866 * 4 2 1 6 6 C 1.37680 * 119.88131 * 180.25505 * 5 4 2 7 7 C 1.38623 * 120.33680 * 359.76611 * 6 5 4 8 8 C 1.50702 * 119.76946 * 180.02562 * 7 6 5 9 9 C 1.38045 * 120.45962 * 359.97438 * 7 6 5 10 10 C 1.38698 * 120.11015 * 0.02562 * 9 7 6 11 11 O 1.35595 * 120.17063 * 179.97438 * 10 9 7 12 12 C 1.42899 * 117.00018 * 2.80044 * 11 10 9 13 13 H 1.09000 * 110.64062 * 33.42141 * 12 11 10 14 14 C 1.55159 * 110.71943 * 156.56189 * 12 11 10 15 15 C 1.54911 * 101.58015 * 153.86702 * 14 12 11 16 16 N 1.47426 * 104.83002 * 322.98962 * 15 14 12 17 17 C 1.36939 * 125.64480 * 204.09378 * 16 15 14 18 18 H 1.08004 * 120.00010 * 163.73158 * 17 16 15 19 19 C 1.38810 * 120.00373 * 343.72245 * 17 16 15 20 20 N 1.31622 * 120.00209 * 331.64442 * 19 17 16 21 21 Si 1.86797 * 119.99988 * 151.90830 * 19 17 16 22 22 H 1.48501 * 109.47403 * 179.72839 * 21 19 17 23 23 H 1.48496 * 109.47317 * 299.73380 * 21 19 17 24 24 H 1.48499 * 109.46862 * 59.73175 * 21 19 17 25 25 C 1.47017 * 108.70412 * 24.35862 * 16 15 14 26 26 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47037 * 299.99477 * 1 2 3 28 28 H 1.09001 * 109.47280 * 59.99727 * 1 2 3 29 29 H 1.07999 * 120.06029 * 359.97438 * 5 4 2 30 30 H 1.07997 * 119.82636 * 179.74351 * 6 5 4 31 31 H 1.09009 * 109.46771 * 269.97789 * 8 7 6 32 32 H 1.08996 * 109.47349 * 29.97079 * 8 7 6 33 33 H 1.08997 * 109.47080 * 149.97879 * 8 7 6 34 34 H 1.07998 * 119.94908 * 180.02562 * 9 7 6 35 35 H 1.09004 * 111.00647 * 35.79393 * 14 12 11 36 36 H 1.09000 * 111.00613 * 271.93847 * 14 12 11 37 37 H 1.09003 * 110.36631 * 204.15749 * 15 14 12 38 38 H 1.08994 * 110.46378 * 81.87788 * 15 14 12 39 39 H 0.97000 * 119.99548 * 354.99021 * 20 19 17 40 40 H 1.09001 * 109.88457 * 118.13000 * 25 16 15 41 41 H 1.08997 * 109.88338 * 239.29093 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5456 -2.4865 -0.0059 6 6 2.2411 -3.6747 -0.0011 7 6 3.6273 -3.6746 0.0041 8 6 4.3757 -4.9826 0.0088 9 6 4.3270 -2.4846 0.0041 10 6 3.6453 -1.2766 -0.0007 11 8 4.3314 -0.1070 -0.0003 12 6 5.7568 -0.1909 -0.0569 13 1 6.0678 -1.0503 -0.6509 14 6 6.3615 1.1189 -0.6279 15 6 7.7742 1.1121 0.0077 16 7 7.5763 0.5627 1.3614 17 6 8.3936 0.7804 2.4383 18 1 8.0417 0.5629 3.4360 19 6 9.6744 1.2804 2.2478 20 7 10.3155 1.0371 1.1244 21 14 10.4911 2.2923 3.5889 22 1 11.8484 2.6994 3.1448 23 1 9.6756 3.5030 3.8615 24 1 10.5986 1.4789 4.8266 25 6 6.3596 -0.2626 1.3620 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.4656 -2.4919 -0.0093 30 1 1.7039 -4.6116 -0.0011 31 1 4.5526 -5.2963 1.0377 32 1 3.7854 -5.7408 -0.5058 33 1 5.3304 -4.8568 -0.5019 34 1 5.4069 -2.4941 0.0078 35 1 5.7903 1.9879 -0.3013 36 1 6.4223 1.0795 -1.7155 37 1 8.1697 2.1263 0.0641 38 1 8.4470 0.4747 -0.5658 39 1 9.9236 0.4491 0.4599 40 1 6.6115 -1.2941 1.6082 41 1 5.6458 0.1298 2.0863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227115076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = -25.160387 kcal Electronic energy + Delta-G solvation = -23029.287671 eV Core-core repulsion = 19682.352152 eV Total energy + Delta-G solvation = -3346.935518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61321 -38.80175 -37.97730 -36.40994 -33.22242 -32.47484 -30.37492 -29.91198 -29.15117 -27.89735 -26.92098 -24.39837 -22.90721 -22.33979 -20.57113 -20.25074 -19.71211 -17.75536 -17.57691 -16.43995 -16.19927 -15.45502 -14.95118 -14.68356 -14.52648 -14.28289 -14.03109 -13.93932 -13.73575 -13.49352 -13.18159 -13.00709 -12.39791 -12.30967 -12.23304 -12.21332 -11.87155 -11.69156 -11.42439 -11.31249 -10.85795 -10.67658 -10.55376 -10.32454 -10.09987 -9.99264 -9.54265 -9.53351 -8.96098 -8.44081 -8.18095 -6.98007 -6.13358 -3.16456 0.64859 1.35255 2.45335 3.27865 3.50463 3.55927 3.67939 3.73011 4.05921 4.56319 4.57088 4.61967 4.91083 4.92600 5.07180 5.07396 5.13362 5.24175 5.29812 5.34238 5.35100 5.41840 5.43839 5.48535 5.60663 5.64178 5.76963 5.90121 6.01441 6.09180 6.12530 6.24378 6.31178 6.39746 6.45436 6.53618 6.71442 6.90275 6.97671 7.57781 7.70589 7.76366 8.45925 8.98338 9.78792 10.31954 11.20334 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.004168 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.649443 B = 6716.429527 C = 7513.969410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.388 3.612 3 O -0.439 6.439 4 C -0.223 4.223 5 C -0.036 4.036 6 C -0.182 4.182 7 C -0.012 4.012 8 C -0.122 4.122 9 C -0.227 4.227 10 C 0.201 3.799 11 O -0.270 6.270 12 C 0.063 3.937 13 H 0.079 0.921 14 C -0.126 4.126 15 C 0.145 3.855 16 N -0.598 5.598 17 C -0.338 4.338 18 H 0.066 0.934 19 C -0.024 4.024 20 N -0.916 5.916 21 Si 1.066 2.934 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.121 3.879 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.268 0.732 40 H 0.027 0.973 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.777 -10.421 -5.179 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.265 3.735 3 O -0.314 6.314 4 C -0.225 4.225 5 C -0.054 4.054 6 C -0.200 4.200 7 C -0.013 4.013 8 C -0.178 4.178 9 C -0.245 4.245 10 C 0.152 3.848 11 O -0.180 6.180 12 C 0.006 3.994 13 H 0.097 0.903 14 C -0.164 4.164 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.466 4.466 18 H 0.083 0.917 19 C -0.225 4.225 20 N -0.557 5.557 21 Si 0.895 3.105 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.005 4.005 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.087 -8.745 -4.694 19.760 hybrid contribution -1.280 -1.348 -0.296 1.883 sum -18.367 -10.093 -4.989 21.543 Atomic orbital electron populations 1.22214 0.94373 1.04243 1.04655 1.22138 0.91153 0.87677 0.72528 1.90634 1.71675 1.33816 1.35279 1.19931 0.90826 0.95913 1.15785 1.21265 0.99673 0.90675 0.93793 1.20824 0.93396 0.98101 1.07710 1.19948 0.93801 0.94857 0.92650 1.20920 1.00255 0.93692 1.02983 1.21299 1.01085 0.91434 1.10708 1.19362 0.90857 0.85753 0.88811 1.86355 1.20211 1.26476 1.84985 1.23750 0.76746 1.00195 0.98683 0.90283 1.22954 0.97945 0.96091 0.99422 1.21573 0.91639 0.98742 0.86093 1.44422 1.26266 1.54218 1.07779 1.19742 0.95801 1.45418 0.85618 0.91654 1.25782 0.92530 1.01583 1.02625 1.70809 1.37344 1.37041 1.10468 0.83510 0.75992 0.76536 0.74433 1.21006 1.22005 1.21966 1.21711 0.90626 0.94917 0.93259 0.90198 0.89095 0.89153 0.84530 0.85550 0.90379 0.91093 0.91056 0.84447 0.90049 0.91033 0.92228 0.95233 0.92064 0.95508 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 10.19 36.01 0.37 -1.34 16 2 C 0.39 5.44 7.22 -30.85 -0.22 5.22 16 3 O -0.44 -8.19 15.91 -16.37 -0.26 -8.45 16 4 C -0.22 -3.09 5.88 -104.94 -0.62 -3.71 16 5 C -0.04 -0.37 9.44 -39.12 -0.37 -0.74 16 6 C -0.18 -1.80 9.67 -39.64 -0.38 -2.19 16 7 C -0.01 -0.14 5.88 -104.55 -0.62 -0.76 16 8 C -0.12 -1.07 10.00 36.01 0.36 -0.71 16 9 C -0.23 -3.24 8.57 -39.48 -0.34 -3.58 16 10 C 0.20 3.27 6.70 -38.58 -0.26 3.01 16 11 O -0.27 -5.16 7.94 -40.39 -0.32 -5.48 16 12 C 0.06 1.20 2.75 -24.89 -0.07 1.13 16 13 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 14 C -0.13 -2.49 6.81 -24.58 -0.17 -2.65 16 15 C 0.15 3.47 5.29 -2.53 -0.01 3.46 16 16 N -0.60 -15.85 3.30 -170.07 -0.56 -16.41 16 17 C -0.34 -9.86 10.02 -15.06 -0.15 -10.02 16 18 H 0.07 1.91 7.97 -52.48 -0.42 1.49 16 19 C -0.02 -0.68 5.08 -17.43 -0.09 -0.77 16 20 N -0.92 -27.86 12.95 55.49 0.72 -27.14 16 21 Si 1.07 25.81 30.00 -169.99 -5.10 20.71 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.12 2.73 6.86 -3.06 -0.02 2.71 16 26 H 0.08 0.47 5.60 -51.93 -0.29 0.18 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.14 0.89 5.93 -52.49 -0.31 0.58 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.14 2.01 5.71 -52.49 -0.30 1.71 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.54 7.93 -51.93 -0.41 1.13 16 38 H 0.03 0.73 6.80 -51.93 -0.35 0.38 16 39 H 0.27 8.12 6.00 -40.82 -0.25 7.87 16 40 H 0.03 0.60 7.95 -51.93 -0.41 0.19 16 41 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -34.71 334.79 -8.72 -43.43 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.65 Total: -0.76 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -2.59 Total: -10.94 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.16 Total: -43.55 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.58 Total: -13.93 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.10 Total: 20.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.71 -8.72 -43.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227115076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.268 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds