Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21300 * 119.99850 * 2 1 4 4 C 1.46786 * 119.99741 * 180.02562 * 2 1 3 5 5 C 1.40015 * 120.22805 * 0.22866 * 4 2 1 6 6 C 1.37680 * 119.88131 * 180.25505 * 5 4 2 7 7 C 1.38623 * 120.33680 * 359.76611 * 6 5 4 8 8 C 1.50702 * 119.76946 * 180.02562 * 7 6 5 9 9 C 1.38045 * 120.45962 * 359.97438 * 7 6 5 10 10 C 1.38698 * 120.11015 * 0.02562 * 9 7 6 11 11 O 1.35595 * 120.17063 * 179.97438 * 10 9 7 12 12 C 1.42899 * 117.00018 * 2.80044 * 11 10 9 13 13 H 1.09000 * 110.64062 * 33.42141 * 12 11 10 14 14 C 1.55159 * 110.71943 * 156.56189 * 12 11 10 15 15 C 1.54911 * 101.58015 * 153.86702 * 14 12 11 16 16 N 1.47426 * 104.83002 * 322.98962 * 15 14 12 17 17 C 1.36939 * 125.64480 * 204.09378 * 16 15 14 18 18 H 1.08004 * 120.00010 * 163.73158 * 17 16 15 19 19 C 1.38810 * 120.00373 * 343.72245 * 17 16 15 20 20 N 1.31622 * 120.00209 * 331.64442 * 19 17 16 21 21 Si 1.86797 * 119.99988 * 151.90830 * 19 17 16 22 22 H 1.48501 * 109.47403 * 179.72839 * 21 19 17 23 23 H 1.48496 * 109.47317 * 299.73380 * 21 19 17 24 24 H 1.48499 * 109.46862 * 59.73175 * 21 19 17 25 25 C 1.47017 * 108.70412 * 24.35862 * 16 15 14 26 26 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47037 * 299.99477 * 1 2 3 28 28 H 1.09001 * 109.47280 * 59.99727 * 1 2 3 29 29 H 1.07999 * 120.06029 * 359.97438 * 5 4 2 30 30 H 1.07997 * 119.82636 * 179.74351 * 6 5 4 31 31 H 1.09009 * 109.46771 * 269.97789 * 8 7 6 32 32 H 1.08996 * 109.47349 * 29.97079 * 8 7 6 33 33 H 1.08997 * 109.47080 * 149.97879 * 8 7 6 34 34 H 1.07998 * 119.94908 * 180.02562 * 9 7 6 35 35 H 1.09004 * 111.00647 * 35.79393 * 14 12 11 36 36 H 1.09000 * 111.00613 * 271.93847 * 14 12 11 37 37 H 1.09003 * 110.36631 * 204.15749 * 15 14 12 38 38 H 1.08994 * 110.46378 * 81.87788 * 15 14 12 39 39 H 0.97000 * 119.99548 * 354.99021 * 20 19 17 40 40 H 1.09001 * 109.88457 * 118.13000 * 25 16 15 41 41 H 1.08997 * 109.88338 * 239.29093 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5456 -2.4865 -0.0059 6 6 2.2411 -3.6747 -0.0011 7 6 3.6273 -3.6746 0.0041 8 6 4.3757 -4.9826 0.0088 9 6 4.3270 -2.4846 0.0041 10 6 3.6453 -1.2766 -0.0007 11 8 4.3314 -0.1070 -0.0003 12 6 5.7568 -0.1909 -0.0569 13 1 6.0678 -1.0503 -0.6509 14 6 6.3615 1.1189 -0.6279 15 6 7.7742 1.1121 0.0077 16 7 7.5763 0.5627 1.3614 17 6 8.3936 0.7804 2.4383 18 1 8.0417 0.5629 3.4360 19 6 9.6744 1.2804 2.2478 20 7 10.3155 1.0371 1.1244 21 14 10.4911 2.2923 3.5889 22 1 11.8484 2.6994 3.1448 23 1 9.6756 3.5030 3.8615 24 1 10.5986 1.4789 4.8266 25 6 6.3596 -0.2626 1.3620 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.4656 -2.4919 -0.0093 30 1 1.7039 -4.6116 -0.0011 31 1 4.5526 -5.2963 1.0377 32 1 3.7854 -5.7408 -0.5058 33 1 5.3304 -4.8568 -0.5019 34 1 5.4069 -2.4941 0.0078 35 1 5.7903 1.9879 -0.3013 36 1 6.4223 1.0795 -1.7155 37 1 8.1697 2.1263 0.0641 38 1 8.4470 0.4747 -0.5658 39 1 9.9236 0.4491 0.4599 40 1 6.6115 -1.2941 1.6082 41 1 5.6458 0.1298 2.0863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227115076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = -45.537403 kcal Electronic energy + Delta-G solvation = -23030.171284 eV Core-core repulsion = 19682.352152 eV Total energy + Delta-G solvation = -3347.819132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76784 -40.13424 -39.16508 -38.02212 -34.64040 -34.02628 -31.58982 -30.95235 -30.71064 -29.50103 -27.93986 -26.44280 -23.94780 -23.45066 -22.31792 -21.83846 -20.83832 -19.71256 -18.97221 -17.56935 -17.26625 -16.89370 -16.36552 -16.08388 -15.78971 -15.53499 -15.34536 -15.20084 -15.14266 -15.01072 -14.46510 -14.36574 -14.12933 -13.42115 -13.08563 -13.03769 -12.97243 -12.79012 -12.73037 -12.70997 -12.60304 -12.47755 -12.18044 -11.92441 -11.78901 -11.74037 -11.62291 -10.62486 -10.59232 -9.91087 -9.27090 -9.15464 -8.44252 -5.44818 -0.32369 0.37937 1.46924 1.53890 1.62459 1.82127 1.97451 2.57775 2.72639 3.08480 3.15517 3.34450 3.43014 3.66390 3.68711 3.76287 3.82252 4.06351 4.15378 4.23993 4.29977 4.34017 4.48294 4.51838 4.60068 4.67271 4.68455 4.72403 4.76702 4.80964 4.88318 4.90689 5.06707 5.10063 5.18978 5.23369 5.34868 5.52510 5.54143 5.78661 6.20930 6.31321 6.70504 6.76713 7.57996 8.14044 8.89202 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.004168 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.649443 B = 6716.429527 C = 7513.969410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.382 3.618 3 O -0.502 6.502 4 C -0.243 4.243 5 C -0.020 4.020 6 C -0.171 4.171 7 C -0.013 4.013 8 C -0.122 4.122 9 C -0.246 4.246 10 C 0.158 3.842 11 O -0.292 6.292 12 C 0.081 3.919 13 H 0.098 0.902 14 C -0.113 4.113 15 C 0.150 3.850 16 N -0.621 5.621 17 C -0.359 4.359 18 H 0.057 0.943 19 C -0.069 4.069 20 N -0.937 5.937 21 Si 1.118 2.882 22 H -0.285 1.285 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.123 3.877 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.183 0.817 30 H 0.169 0.831 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.032 0.968 38 H 0.023 0.977 39 H 0.257 0.743 40 H 0.028 0.972 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.619 -12.682 -5.366 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.263 3.737 3 O -0.381 6.381 4 C -0.245 4.245 5 C -0.037 4.037 6 C -0.188 4.188 7 C -0.014 4.014 8 C -0.178 4.178 9 C -0.265 4.265 10 C 0.111 3.889 11 O -0.204 6.204 12 C 0.025 3.975 13 H 0.115 0.885 14 C -0.152 4.152 15 C 0.025 3.975 16 N -0.349 5.349 17 C -0.486 4.486 18 H 0.074 0.926 19 C -0.266 4.266 20 N -0.579 5.579 21 Si 0.942 3.058 22 H -0.210 1.210 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.002 4.002 26 H 0.134 0.866 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.200 0.800 30 H 0.187 0.813 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -19.981 -11.053 -4.887 23.352 hybrid contribution -0.535 -0.819 -0.239 1.007 sum -20.516 -11.872 -5.126 24.251 Atomic orbital electron populations 1.22238 0.89798 1.06901 1.05541 1.23047 0.93667 0.86800 0.70157 1.90613 1.73361 1.35694 1.38442 1.20347 0.90051 0.97680 1.16435 1.21785 1.01783 0.89019 0.91113 1.21361 0.92672 0.99768 1.05046 1.20357 0.95060 0.94736 0.91216 1.20998 1.00230 0.92926 1.03663 1.21311 1.00606 0.92191 1.12342 1.19853 0.92110 0.85332 0.91624 1.86315 1.19246 1.28568 1.86256 1.23401 0.77745 1.00216 0.96171 0.88474 1.22821 0.95000 0.96231 1.01102 1.21474 0.93927 0.96704 0.85405 1.44669 1.26759 1.55354 1.08165 1.19989 0.96504 1.45896 0.86259 0.92557 1.27243 0.93292 1.01955 1.04107 1.70914 1.37858 1.37938 1.11178 0.82828 0.74969 0.75468 0.72584 1.21021 1.20954 1.19774 1.21719 0.89013 0.94005 0.95489 0.86630 0.88291 0.87927 0.79962 0.81343 0.89778 0.88250 0.91689 0.85920 0.91174 0.87662 0.94994 0.95893 0.93244 0.95439 0.96411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 10.19 71.24 0.73 -1.94 16 2 C 0.38 10.44 7.22 27.92 0.20 10.64 16 3 O -0.50 -19.42 15.91 17.86 0.28 -19.14 16 4 C -0.24 -6.44 5.88 -20.07 -0.12 -6.56 16 5 C -0.02 -0.31 9.44 22.57 0.21 -0.10 16 6 C -0.17 -2.59 9.67 22.23 0.21 -2.37 16 7 C -0.01 -0.28 5.88 -19.82 -0.12 -0.39 16 8 C -0.12 -1.80 10.00 71.24 0.71 -1.09 16 9 C -0.25 -7.02 8.57 22.33 0.19 -6.83 16 10 C 0.16 5.21 6.70 22.92 0.15 5.37 16 11 O -0.29 -11.69 7.94 -68.10 -0.54 -12.23 16 12 C 0.08 3.25 2.75 31.79 0.09 3.34 16 13 H 0.10 3.48 6.14 -2.39 -0.01 3.46 16 14 C -0.11 -4.64 6.81 31.99 0.22 -4.43 16 15 C 0.15 7.54 5.29 86.86 0.46 8.00 16 16 N -0.62 -34.50 3.30 -691.98 -2.28 -36.78 16 17 C -0.36 -21.70 10.02 84.03 0.84 -20.86 16 18 H 0.06 3.42 7.97 -2.91 -0.02 3.39 16 19 C -0.07 -4.13 5.08 84.86 0.43 -3.70 16 20 N -0.94 -58.64 12.95 21.65 0.28 -58.36 16 21 Si 1.12 52.86 30.00 68.60 2.06 54.92 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.12 5.87 6.86 86.73 0.60 6.47 16 26 H 0.12 0.73 5.60 -2.39 -0.01 0.72 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.18 1.17 5.93 -2.91 -0.02 1.15 16 30 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.12 3.73 5.71 -2.91 -0.02 3.71 16 35 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.03 1.74 7.93 -2.39 -0.02 1.72 16 38 H 0.02 1.19 6.80 -2.39 -0.02 1.17 16 39 H 0.26 16.21 6.00 -92.71 -0.56 15.66 16 40 H 0.03 1.29 7.95 -2.39 -0.02 1.27 16 41 H 0.02 0.91 8.05 -2.39 -0.02 0.89 16 Total: -1.00 -81.39 334.79 5.86 -75.53 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.25 Total: 10.52 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.81 Total: -14.45 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -2.00 Total: -95.14 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.26 Total: -31.37 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.06 Total: 54.92 kcal Total: -81.39 5.86 -75.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227115076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.991 kcal (2) G-P(sol) polarization free energy of solvation -81.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds