Wall clock time and date at job start Tue Mar 31 2020 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21297 * 119.99833 * 2 1 4 4 C 1.46779 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.40014 * 120.22821 * 359.97380 * 4 2 1 6 6 C 1.37673 * 119.88787 * 180.02562 * 5 4 2 7 7 C 1.38631 * 120.33331 * 359.97397 * 6 5 4 8 8 C 1.50701 * 119.77080 * 180.02562 * 7 6 5 9 9 C 1.38052 * 120.45855 * 359.76886 * 7 6 5 10 10 C 1.38694 * 120.10571 * 0.51414 * 9 7 6 11 11 O 1.35605 * 120.16750 * 179.74122 * 10 9 7 12 12 C 1.42901 * 116.99943 * 5.80726 * 11 10 9 13 13 C 1.53512 * 114.17027 * 156.73175 * 12 11 10 14 14 N 1.47483 * 87.92699 * 87.62309 * 13 12 11 15 15 C 1.46904 * 110.99302 * 138.70580 * 14 13 12 16 16 C 1.50706 * 109.46430 * 169.99928 * 15 14 13 17 17 H 1.07994 * 120.00649 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99318 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00714 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99628 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47063 * 270.00206 * 20 18 16 22 22 H 1.48499 * 109.47257 * 29.99754 * 20 18 16 23 23 H 1.48501 * 109.47198 * 150.00242 * 20 18 16 24 24 C 1.47474 * 87.83578 * 27.01109 * 14 13 12 25 25 H 1.08993 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46708 * 299.99802 * 1 2 3 27 27 H 1.08998 * 109.47205 * 59.99986 * 1 2 3 28 28 H 1.08005 * 120.05545 * 0.04493 * 5 4 2 29 29 H 1.07994 * 119.83524 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46970 * 90.00391 * 8 7 6 31 31 H 1.08994 * 109.47594 * 210.00498 * 8 7 6 32 32 H 1.09003 * 109.47107 * 330.00839 * 8 7 6 33 33 H 1.07998 * 119.94716 * 180.27683 * 9 7 6 34 34 H 1.09004 * 113.25652 * 23.78252 * 12 11 10 35 35 H 1.09001 * 113.47587 * 332.85925 * 13 12 11 36 36 H 1.08998 * 113.52941 * 202.40161 * 13 12 11 37 37 H 1.08990 * 109.47410 * 50.00036 * 15 14 13 38 38 H 1.09000 * 109.46872 * 289.99475 * 15 14 13 39 39 H 0.97000 * 120.00314 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.47565 * 87.75567 * 24 14 13 41 41 H 1.08998 * 113.47479 * 218.21667 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 1.5457 -2.4865 -0.0006 6 6 2.2411 -3.6746 -0.0006 7 6 3.6275 -3.6745 -0.0011 8 6 4.3759 -4.9825 -0.0017 9 6 4.3271 -2.4844 -0.0065 10 6 3.6454 -1.2766 -0.0006 11 8 4.3314 -0.1069 -0.0005 12 6 5.7517 -0.1878 -0.1355 13 6 6.4048 1.0890 -0.6831 14 7 6.4866 1.5786 0.7057 15 6 7.7732 2.2426 0.9547 16 6 7.7283 2.9399 2.2900 17 1 6.8335 2.8948 2.8930 18 6 8.8297 3.6356 2.7417 19 7 9.9195 3.6902 2.0077 20 14 8.7743 4.4993 4.3971 21 1 8.2817 5.8884 4.2145 22 1 7.8595 3.7655 5.3080 23 1 10.1377 4.5309 4.9848 24 6 6.5258 0.1701 1.1408 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.4657 -2.4918 -0.0009 29 1 1.7040 -4.6116 -0.0001 30 1 4.5560 -5.2976 -1.0296 31 1 5.3289 -4.8561 0.5118 32 1 3.7840 -5.7400 0.5121 33 1 5.4070 -2.4939 -0.0114 34 1 6.0864 -1.1041 -0.6219 35 1 5.7408 1.6804 -1.3136 36 1 7.3789 0.9175 -1.1412 37 1 7.9627 2.9739 0.1691 38 1 8.5706 1.4995 0.9595 39 1 10.6942 4.1799 2.3254 40 1 7.5322 -0.2476 1.1698 41 1 5.9645 -0.0174 2.0561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227118664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:48 Heat of formation + Delta-G solvation = -3.667614 kcal Electronic energy + Delta-G solvation = -22574.438261 eV Core-core repulsion = 19228.434739 eV Total energy + Delta-G solvation = -3346.003522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.74947 -39.39876 -38.22986 -36.83494 -33.22386 -32.81681 -30.42860 -29.90138 -29.19159 -27.32325 -25.54629 -25.24201 -23.04649 -22.45316 -21.53909 -19.92036 -19.49486 -17.55500 -16.42669 -16.32279 -16.17405 -15.56465 -15.09645 -14.81391 -14.59744 -14.41307 -14.31375 -14.03123 -13.88534 -13.58696 -13.26544 -13.11222 -12.37145 -12.28884 -12.26073 -12.00687 -11.93275 -11.80918 -11.53138 -11.45355 -10.98850 -10.90960 -10.48597 -10.33798 -10.05655 -9.65813 -9.48459 -9.23791 -9.00692 -8.40527 -8.21068 -7.80879 -6.01154 -4.01672 0.63412 1.30432 2.47889 3.16033 3.35283 3.40474 3.45913 3.64787 4.07630 4.45432 4.51337 4.54828 4.71758 4.78750 4.84974 4.93506 5.05948 5.18545 5.26197 5.31455 5.34194 5.35122 5.36050 5.43720 5.56522 5.77008 5.80269 5.84934 5.89151 6.05893 6.08800 6.17979 6.23046 6.31162 6.35514 6.62826 6.64805 7.15396 7.53903 7.67755 7.76711 7.88947 8.12204 8.48726 9.06433 9.62379 11.10055 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.003725 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.746877 B = 7514.211783 C = 8273.285017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.383 3.617 3 O -0.429 6.429 4 C -0.218 4.218 5 C -0.036 4.036 6 C -0.182 4.182 7 C -0.015 4.015 8 C -0.121 4.121 9 C -0.229 4.229 10 C 0.198 3.802 11 O -0.243 6.243 12 C 0.036 3.964 13 C 0.002 3.998 14 N -0.452 5.452 15 C 0.156 3.844 16 C -0.502 4.502 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.004 4.004 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.004 0.996 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -18.817 -6.785 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.259 3.741 3 O -0.303 6.303 4 C -0.219 4.219 5 C -0.054 4.054 6 C -0.200 4.200 7 C -0.015 4.015 8 C -0.178 4.178 9 C -0.247 4.247 10 C 0.149 3.851 11 O -0.153 6.153 12 C -0.021 4.021 13 C -0.127 4.127 14 N -0.175 5.175 15 C 0.029 3.971 16 C -0.541 4.541 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.133 4.133 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.004 -17.448 -6.480 24.547 hybrid contribution 1.011 -0.221 0.609 1.201 sum -14.993 -17.669 -5.871 23.905 Atomic orbital electron populations 1.22212 0.94415 1.04114 1.04718 1.22144 0.91174 0.87728 0.73039 1.90696 1.71503 1.33628 1.34448 1.19971 0.90815 0.96002 1.15159 1.21286 0.99764 0.90655 0.93650 1.20825 0.93421 0.98102 1.07664 1.19931 0.93824 0.94800 0.92975 1.20908 1.00319 0.93807 1.02737 1.21216 1.00883 0.91409 1.11237 1.19416 0.90955 0.85743 0.88978 1.86408 1.19021 1.25782 1.84046 1.23859 0.78848 0.99456 0.99949 1.23978 0.98966 0.93626 0.96125 1.69132 1.35246 1.09710 1.03403 1.20317 0.84165 0.94416 0.98155 1.21113 0.99167 1.31100 1.02708 0.91804 1.25000 0.95328 0.96608 0.97782 1.69953 1.03571 1.42810 1.37858 0.86467 0.77041 0.80041 0.83710 1.20559 1.19819 1.21308 1.24227 0.98832 0.92814 0.97461 0.90312 0.89077 0.89160 0.84488 0.85584 0.90580 0.91061 0.91076 0.84547 0.89620 0.89555 0.90431 0.95137 0.97865 0.92950 0.90565 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 10.19 36.01 0.37 -1.38 16 2 C 0.38 5.41 7.22 -30.86 -0.22 5.19 16 3 O -0.43 -8.27 15.91 -16.37 -0.26 -8.53 16 4 C -0.22 -2.91 5.88 -104.95 -0.62 -3.52 16 5 C -0.04 -0.34 9.44 -39.12 -0.37 -0.71 16 6 C -0.18 -1.63 9.67 -39.64 -0.38 -2.01 16 7 C -0.02 -0.15 5.88 -104.54 -0.62 -0.76 16 8 C -0.12 -0.85 10.00 36.01 0.36 -0.49 16 9 C -0.23 -2.83 8.66 -39.48 -0.34 -3.17 16 10 C 0.20 3.00 6.70 -38.58 -0.26 2.74 16 11 O -0.24 -4.47 8.26 -40.42 -0.33 -4.80 16 12 C 0.04 0.60 4.06 -26.21 -0.11 0.49 16 13 C 0.00 0.05 7.52 -7.55 -0.06 -0.01 16 14 N -0.45 -10.63 6.32 -246.14 -1.55 -12.18 16 15 C 0.16 4.21 4.57 -4.97 -0.02 4.19 16 16 C -0.50 -14.94 9.39 -34.44 -0.32 -15.27 16 17 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 20 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.00 -0.07 7.55 -7.56 -0.06 -0.13 16 25 H 0.08 0.46 5.60 -51.93 -0.29 0.17 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.14 0.84 5.93 -52.48 -0.31 0.53 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.14 1.55 5.89 -52.49 -0.31 1.24 16 34 H 0.09 1.15 5.91 -51.93 -0.31 0.84 16 35 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 1.34 7.91 -51.93 -0.41 0.93 16 37 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 1.42 7.42 -51.93 -0.39 1.03 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -35.54 341.90 -9.76 -45.30 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.73 Total: -2.40 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.74 Total: -13.36 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.82 Total: -38.84 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.59 Total: -13.33 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.54 -9.76 -45.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227118664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.632 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds