Wall clock time and date at job start Tue Mar 31 2020 06:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21297 * 119.99833 * 2 1 4 4 C 1.46779 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.40014 * 120.22821 * 359.97380 * 4 2 1 6 6 C 1.37673 * 119.88787 * 180.02562 * 5 4 2 7 7 C 1.38631 * 120.33331 * 359.97397 * 6 5 4 8 8 C 1.50701 * 119.77080 * 180.02562 * 7 6 5 9 9 C 1.38052 * 120.45855 * 359.76886 * 7 6 5 10 10 C 1.38694 * 120.10571 * 0.51414 * 9 7 6 11 11 O 1.35605 * 120.16750 * 179.74122 * 10 9 7 12 12 C 1.42901 * 116.99943 * 5.80726 * 11 10 9 13 13 C 1.53512 * 114.17027 * 156.73175 * 12 11 10 14 14 N 1.47483 * 87.92699 * 87.62309 * 13 12 11 15 15 C 1.46904 * 110.99302 * 138.70580 * 14 13 12 16 16 C 1.50706 * 109.46430 * 169.99928 * 15 14 13 17 17 H 1.07994 * 120.00649 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99318 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00714 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99628 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47063 * 270.00206 * 20 18 16 22 22 H 1.48499 * 109.47257 * 29.99754 * 20 18 16 23 23 H 1.48501 * 109.47198 * 150.00242 * 20 18 16 24 24 C 1.47474 * 87.83578 * 27.01109 * 14 13 12 25 25 H 1.08993 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46708 * 299.99802 * 1 2 3 27 27 H 1.08998 * 109.47205 * 59.99986 * 1 2 3 28 28 H 1.08005 * 120.05545 * 0.04493 * 5 4 2 29 29 H 1.07994 * 119.83524 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.46970 * 90.00391 * 8 7 6 31 31 H 1.08994 * 109.47594 * 210.00498 * 8 7 6 32 32 H 1.09003 * 109.47107 * 330.00839 * 8 7 6 33 33 H 1.07998 * 119.94716 * 180.27683 * 9 7 6 34 34 H 1.09004 * 113.25652 * 23.78252 * 12 11 10 35 35 H 1.09001 * 113.47587 * 332.85925 * 13 12 11 36 36 H 1.08998 * 113.52941 * 202.40161 * 13 12 11 37 37 H 1.08990 * 109.47410 * 50.00036 * 15 14 13 38 38 H 1.09000 * 109.46872 * 289.99475 * 15 14 13 39 39 H 0.97000 * 120.00314 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.47565 * 87.75567 * 24 14 13 41 41 H 1.08998 * 113.47479 * 218.21667 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 1.5457 -2.4865 -0.0006 6 6 2.2411 -3.6746 -0.0006 7 6 3.6275 -3.6745 -0.0011 8 6 4.3759 -4.9825 -0.0017 9 6 4.3271 -2.4844 -0.0065 10 6 3.6454 -1.2766 -0.0006 11 8 4.3314 -0.1069 -0.0005 12 6 5.7517 -0.1878 -0.1355 13 6 6.4048 1.0890 -0.6831 14 7 6.4866 1.5786 0.7057 15 6 7.7732 2.2426 0.9547 16 6 7.7283 2.9399 2.2900 17 1 6.8335 2.8948 2.8930 18 6 8.8297 3.6356 2.7417 19 7 9.9195 3.6902 2.0077 20 14 8.7743 4.4993 4.3971 21 1 8.2817 5.8884 4.2145 22 1 7.8595 3.7655 5.3080 23 1 10.1377 4.5309 4.9848 24 6 6.5258 0.1701 1.1408 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.4657 -2.4918 -0.0009 29 1 1.7040 -4.6116 -0.0001 30 1 4.5560 -5.2976 -1.0296 31 1 5.3289 -4.8561 0.5118 32 1 3.7840 -5.7400 0.5121 33 1 5.4070 -2.4939 -0.0114 34 1 6.0864 -1.1041 -0.6219 35 1 5.7408 1.6804 -1.3136 36 1 7.3789 0.9175 -1.1412 37 1 7.9627 2.9739 0.1691 38 1 8.5706 1.4995 0.9595 39 1 10.6942 4.1799 2.3254 40 1 7.5322 -0.2476 1.1698 41 1 5.9645 -0.0174 2.0561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227118664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:46 Heat of formation + Delta-G solvation = -27.915555 kcal Electronic energy + Delta-G solvation = -22575.489731 eV Core-core repulsion = 19228.434739 eV Total energy + Delta-G solvation = -3347.054991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93419 -40.71115 -39.33991 -38.05824 -35.07141 -34.03144 -31.61432 -30.84840 -30.67754 -28.18458 -27.27753 -26.92960 -24.29249 -23.41969 -23.16352 -21.00354 -20.75635 -18.74694 -18.54421 -17.43070 -17.32081 -16.99162 -16.55671 -16.13502 -15.94824 -15.72318 -15.41446 -15.05528 -14.99970 -14.88721 -14.43929 -14.34705 -13.94338 -13.61036 -13.22412 -13.07140 -12.96893 -12.92285 -12.86853 -12.64909 -12.46734 -12.33292 -12.25428 -12.04984 -11.57936 -11.50123 -11.29534 -10.66569 -10.54456 -9.84370 -9.64113 -9.19114 -8.27827 -6.38110 -0.26388 0.43585 1.34954 1.37448 1.48955 1.52567 1.99923 2.35576 2.76872 3.03598 3.20193 3.23635 3.25467 3.65433 3.79904 3.86503 4.05641 4.19244 4.34034 4.34279 4.39160 4.43163 4.52409 4.53658 4.58596 4.67873 4.74150 4.81102 4.85532 4.86073 4.94726 4.97460 5.09756 5.26102 5.29307 5.38975 5.52264 5.57959 5.72477 5.84523 6.02401 6.37773 6.45588 6.74923 6.76835 7.31262 8.83254 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.003725 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.746877 B = 7514.211783 C = 8273.285017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.377 3.623 3 O -0.500 6.500 4 C -0.245 4.245 5 C -0.022 4.022 6 C -0.173 4.173 7 C -0.013 4.013 8 C -0.121 4.121 9 C -0.241 4.241 10 C 0.157 3.843 11 O -0.279 6.279 12 C 0.063 3.937 13 C 0.001 3.999 14 N -0.488 5.488 15 C 0.172 3.828 16 C -0.531 4.531 17 H 0.049 0.951 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.004 4.004 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.002 0.998 38 H -0.008 1.008 39 H 0.267 0.733 40 H 0.087 0.913 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.874 -21.963 -6.490 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.258 3.742 3 O -0.379 6.379 4 C -0.247 4.247 5 C -0.040 4.040 6 C -0.191 4.191 7 C -0.013 4.013 8 C -0.177 4.177 9 C -0.260 4.260 10 C 0.110 3.890 11 O -0.191 6.191 12 C 0.006 3.994 13 C -0.129 4.129 14 N -0.211 5.211 15 C 0.046 3.954 16 C -0.569 4.569 17 H 0.067 0.933 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.794 3.206 21 H -0.199 1.199 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.133 4.133 25 H 0.134 0.866 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.195 0.805 29 H 0.183 0.817 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.020 0.980 38 H 0.009 0.991 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.924 -20.639 -6.196 28.029 hybrid contribution 1.499 0.591 0.472 1.679 sum -16.424 -20.048 -5.724 26.541 Atomic orbital electron populations 1.22238 0.90199 1.06791 1.05351 1.23083 0.93609 0.87120 0.70400 1.90670 1.73280 1.35817 1.38155 1.20315 0.90498 0.97302 1.16589 1.21732 1.01636 0.89179 0.91437 1.21351 0.93125 0.99416 1.05233 1.20380 0.94784 0.95060 0.91073 1.20994 1.00263 0.92532 1.03896 1.21343 1.01217 0.91452 1.11973 1.19898 0.91948 0.85586 0.91561 1.86364 1.19150 1.28314 1.85224 1.23592 0.78867 0.99624 0.97347 1.24034 1.00075 0.94806 0.93937 1.69028 1.33008 1.12279 1.06819 1.19981 0.85714 0.93546 0.96209 1.21377 0.99093 1.32502 1.03957 0.93271 1.25890 0.94680 0.96950 1.01774 1.70051 1.04169 1.43197 1.39635 0.85379 0.77707 0.78743 0.78762 1.19854 1.19403 1.19732 1.24230 0.99813 0.90751 0.98533 0.86577 0.88565 0.88164 0.80525 0.81665 0.89164 0.91201 0.88991 0.84275 0.85663 0.90364 0.88678 0.97961 0.99054 0.92387 0.89553 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 10.19 71.24 0.73 -2.26 16 2 C 0.38 10.79 7.22 27.92 0.20 11.00 16 3 O -0.50 -20.66 15.91 17.87 0.28 -20.37 16 4 C -0.25 -6.38 5.88 -20.08 -0.12 -6.50 16 5 C -0.02 -0.34 9.44 22.57 0.21 -0.13 16 6 C -0.17 -2.31 9.67 22.23 0.21 -2.10 16 7 C -0.01 -0.21 5.88 -19.81 -0.12 -0.33 16 8 C -0.12 -1.23 10.00 71.24 0.71 -0.51 16 9 C -0.24 -5.69 8.66 22.33 0.19 -5.50 16 10 C 0.16 4.82 6.70 22.92 0.15 4.98 16 11 O -0.28 -10.80 8.26 -68.21 -0.56 -11.37 16 12 C 0.06 2.17 4.06 30.94 0.13 2.29 16 13 C 0.00 0.02 7.52 83.57 0.63 0.65 16 14 N -0.49 -24.31 6.32 -933.03 -5.89 -30.21 16 15 C 0.17 9.85 4.57 85.56 0.39 10.24 16 16 C -0.53 -32.92 9.39 25.60 0.24 -32.68 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.01 0.33 5.46 84.66 0.46 0.79 16 19 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 20 Si 0.97 46.85 29.54 68.60 2.03 48.87 16 21 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.00 -0.16 7.55 83.57 0.63 0.47 16 25 H 0.12 0.87 5.60 -2.39 -0.01 0.86 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.18 1.18 5.93 -2.91 -0.02 1.16 16 29 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.09 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.14 3.02 5.89 -2.91 -0.02 3.00 16 34 H 0.13 3.28 5.91 -2.38 -0.01 3.26 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.10 3.40 7.91 -2.39 -0.02 3.38 16 37 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 38 H -0.01 -0.48 7.30 -2.39 -0.02 -0.50 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.09 3.31 7.42 -2.39 -0.02 3.29 16 41 H 0.07 2.91 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -83.56 341.90 1.83 -81.73 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.03 Total: 8.26 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.66 Total: -19.59 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -5.61 Total: -87.53 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.28 Total: -31.74 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -83.56 1.83 -81.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227118664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.813 kcal (2) G-P(sol) polarization free energy of solvation -83.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds