Wall clock time and date at job start Tue Mar 31 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21292 * 120.00417 * 2 1 4 4 C 1.46863 * 120.00004 * 180.02562 * 2 1 3 5 5 C 1.40043 * 120.11037 * 354.05858 * 4 2 1 6 6 C 1.36586 * 120.00590 * 180.02562 * 5 4 2 7 7 C 1.39075 * 120.24676 * 0.02921 * 6 5 4 8 8 O 1.35659 * 119.88766 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00114 * 173.50105 * 8 7 6 10 10 C 1.53511 * 114.17384 * 200.54952 * 9 8 7 11 11 N 1.47476 * 87.93275 * 220.32964 * 10 9 8 12 12 C 1.46903 * 110.99972 * 138.70398 * 11 10 9 13 13 C 1.50703 * 109.47003 * 169.99858 * 12 11 10 14 14 H 1.07990 * 120.00131 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99746 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99827 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00055 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47216 * 270.00019 * 17 15 13 19 19 H 1.48495 * 109.46940 * 30.00524 * 17 15 13 20 20 H 1.48503 * 109.46954 * 150.00245 * 17 15 13 21 21 C 1.47473 * 87.83867 * 27.00770 * 11 10 9 22 22 C 1.39086 * 120.22698 * 0.22783 * 7 6 5 23 23 C 1.37647 * 119.98765 * 359.48999 * 22 7 6 24 24 C 1.50700 * 120.12164 * 180.25400 * 23 22 7 25 25 H 1.08995 * 109.47453 * 240.00142 * 1 2 3 26 26 H 1.08999 * 109.46911 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.46867 * 119.99807 * 1 2 3 28 28 H 1.08002 * 120.00012 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.87716 * 179.97438 * 6 5 4 30 30 H 1.09006 * 113.26045 * 333.50236 * 9 8 7 31 31 H 1.09000 * 113.47705 * 105.56174 * 10 9 8 32 32 H 1.08996 * 113.47409 * 335.09553 * 10 9 8 33 33 H 1.08996 * 109.47556 * 49.99772 * 12 11 10 34 34 H 1.09002 * 109.47041 * 289.99759 * 12 11 10 35 35 H 0.97008 * 119.99673 * 179.97438 * 16 15 13 36 36 H 1.09005 * 113.47777 * 87.75642 * 21 11 10 37 37 H 1.08997 * 113.48150 * 218.22204 * 21 11 10 38 38 H 1.07999 * 120.00494 * 179.75202 * 22 7 6 39 39 H 1.08994 * 109.47447 * 263.11664 * 24 23 22 40 40 H 1.09004 * 109.47330 * 23.12243 * 24 23 22 41 41 H 1.09003 * 109.46963 * 143.11349 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5491 -2.4828 0.1243 6 6 2.2342 -3.6644 0.1240 7 6 3.6194 -3.6710 0.0007 8 8 4.2926 -4.8488 0.0018 9 6 5.6943 -4.7951 -0.2710 10 6 6.2944 -6.1272 -0.7424 11 7 7.4697 -5.8340 0.0989 12 6 7.9290 -7.0402 0.8005 13 6 9.2614 -6.7672 1.4494 14 1 9.7213 -5.7951 1.3502 15 6 9.8933 -7.7585 2.1698 16 7 11.0559 -7.5201 2.7366 17 14 9.0975 -9.4398 2.3420 18 1 8.2335 -9.4572 3.5497 19 1 8.2734 -9.7228 1.1395 20 1 10.1532 -10.4760 2.4736 21 6 6.5834 -5.0277 0.9586 22 6 4.3175 -2.4739 -0.1186 23 6 3.6361 -1.2779 -0.1253 24 6 4.3889 0.0206 -0.2601 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 0.4734 -2.4825 0.2208 29 1 1.6983 -4.5971 0.2209 30 1 5.9823 -3.9364 -0.8776 31 1 6.5184 -6.1493 -1.8089 32 1 5.7301 -6.9989 -0.4113 33 1 8.0329 -7.8580 0.0874 34 1 7.2020 -7.3149 1.5648 35 1 11.5004 -8.2175 3.2437 36 1 6.0962 -5.6060 1.7436 37 1 7.0523 -4.1180 1.3338 38 1 5.3935 -2.4830 -0.2101 39 1 4.5510 0.4510 0.7281 40 1 5.3509 -0.1650 -0.7378 41 1 3.8093 0.7151 -0.8682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228213777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:31 Heat of formation + Delta-G solvation = -5.144734 kcal Electronic energy + Delta-G solvation = -22093.548652 eV Core-core repulsion = 18747.481078 eV Total energy + Delta-G solvation = -3346.067575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89409 -39.97125 -38.62852 -36.82407 -33.14984 -32.84342 -31.53891 -29.92274 -29.24912 -27.22896 -25.88652 -25.60581 -23.61195 -22.03078 -21.28770 -20.09683 -19.60982 -18.11688 -16.93173 -16.79909 -16.42364 -15.64511 -15.36290 -15.14924 -15.01674 -14.49469 -14.36686 -13.94260 -13.71167 -13.42190 -13.24215 -13.02881 -12.85867 -12.50172 -12.48068 -12.40703 -12.25787 -12.07250 -11.83136 -11.81854 -11.17182 -10.96273 -10.73962 -10.20435 -10.12449 -9.85600 -9.69504 -9.44615 -9.11493 -8.65075 -8.37597 -8.23933 -6.11525 -4.09976 0.52877 1.13431 2.21117 3.02307 3.22609 3.30868 3.31159 3.53342 3.88645 4.35162 4.38840 4.49352 4.56058 4.58815 4.78403 4.83946 4.99384 5.00425 5.06280 5.14415 5.18541 5.29850 5.45358 5.52738 5.59880 5.62244 5.66729 5.71473 5.84664 5.95244 6.00729 6.04515 6.04859 6.13910 6.25625 6.35771 6.49848 6.60059 7.16547 7.29182 7.36206 7.54199 7.68157 8.53559 8.98069 9.48737 11.01621 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.002884 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.468081 B = 9706.119854 C =10115.848932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.463 6.463 4 C -0.229 4.229 5 C -0.029 4.029 6 C -0.177 4.177 7 C 0.179 3.821 8 O -0.297 6.297 9 C 0.040 3.960 10 C 0.001 3.999 11 N -0.448 5.448 12 C 0.130 3.870 13 C -0.510 4.510 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.284 1.284 21 C -0.005 4.005 22 C -0.229 4.229 23 C 0.022 3.978 24 C -0.124 4.124 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.031 0.969 34 H -0.001 1.001 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.432 10.957 -6.917 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.276 3.724 3 O -0.340 6.340 4 C -0.230 4.230 5 C -0.047 4.047 6 C -0.196 4.196 7 C 0.132 3.868 8 O -0.208 6.208 9 C -0.016 4.016 10 C -0.128 4.128 11 N -0.172 5.172 12 C 0.004 3.996 13 C -0.548 4.548 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.536 5.536 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.192 1.192 20 H -0.209 1.209 21 C -0.134 4.134 22 C -0.247 4.247 23 C 0.021 3.979 24 C -0.180 4.180 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.393 11.458 -7.046 25.270 hybrid contribution -0.809 -1.589 0.657 1.900 sum -22.202 9.869 -6.389 25.123 Atomic orbital electron populations 1.22246 0.94170 1.04901 1.04368 1.22271 0.91388 0.87628 0.71065 1.90503 1.71565 1.34644 1.37313 1.20166 0.93895 0.94850 1.14124 1.20899 0.99737 0.90624 0.93460 1.20159 0.91118 0.99371 1.08932 1.19441 0.91823 0.85148 0.90379 1.86142 1.23160 1.28024 1.83491 1.24611 0.76489 1.00879 0.99651 1.24093 0.92484 0.95148 1.01059 1.68989 1.18553 1.17056 1.12563 1.20754 0.97251 0.88390 0.93250 1.20919 1.01980 1.00932 1.30982 0.90089 1.24917 0.94790 0.98470 0.95154 1.69893 1.15342 1.33933 1.34458 0.86868 0.79427 0.84589 0.78926 1.20204 1.19218 1.20948 1.24324 0.92976 1.00736 0.95343 1.21286 1.01085 0.91381 1.10957 1.20013 0.92341 0.95347 0.90172 1.21125 0.99384 0.94061 1.03467 0.88993 0.89916 0.89026 0.84655 0.84676 0.86982 0.89202 0.90843 0.95114 0.98306 0.92540 0.90551 0.89464 0.84253 0.90265 0.91908 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 9.00 36.00 0.32 -0.80 16 2 C 0.40 3.83 7.15 -30.82 -0.22 3.61 16 3 O -0.46 -5.79 14.08 5.55 0.08 -5.71 16 4 C -0.23 -2.37 5.87 -105.06 -0.62 -2.99 16 5 C -0.03 -0.25 9.41 -39.50 -0.37 -0.62 16 6 C -0.18 -1.83 9.92 -39.87 -0.40 -2.22 16 7 C 0.18 2.24 6.69 -38.96 -0.26 1.98 16 8 O -0.30 -4.16 10.17 -18.68 -0.19 -4.35 16 9 C 0.04 0.58 3.94 -26.20 -0.10 0.47 16 10 C 0.00 0.02 7.52 -7.55 -0.06 -0.04 16 11 N -0.45 -9.11 6.32 -246.13 -1.55 -10.66 16 12 C 0.13 3.11 3.64 -4.97 -0.02 3.09 16 13 C -0.51 -14.53 9.94 -34.44 -0.34 -14.87 16 14 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 17 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.00 -0.08 7.55 -7.55 -0.06 -0.14 16 22 C -0.23 -2.77 8.62 -39.48 -0.34 -3.11 16 23 C 0.02 0.25 5.92 -104.16 -0.62 -0.36 16 24 C -0.12 -1.35 8.71 36.01 0.31 -1.04 16 25 H 0.09 0.37 7.90 -51.93 -0.41 -0.04 16 26 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 28 H 0.14 0.70 6.97 -52.49 -0.37 0.33 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.11 1.45 6.09 -51.93 -0.32 1.13 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 33 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 34 H 0.00 -0.02 6.73 -51.93 -0.35 -0.37 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.14 1.63 5.96 -52.49 -0.31 1.31 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 41 H 0.09 1.04 5.90 -51.93 -0.31 0.74 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -32.36 337.27 -9.11 -41.47 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.77 Total: -0.56 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.86 Total: -15.15 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.78 Total: -37.33 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.11 Total: -10.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.36 -9.11 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228213777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.321 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds