Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21292 * 120.00417 * 2 1 4 4 C 1.46863 * 120.00004 * 180.02562 * 2 1 3 5 5 C 1.40043 * 120.11037 * 354.05858 * 4 2 1 6 6 C 1.36586 * 120.00590 * 180.02562 * 5 4 2 7 7 C 1.39075 * 120.24676 * 0.02921 * 6 5 4 8 8 O 1.35659 * 119.88766 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00114 * 173.50105 * 8 7 6 10 10 C 1.53511 * 114.17384 * 200.54952 * 9 8 7 11 11 N 1.47476 * 87.93275 * 220.32964 * 10 9 8 12 12 C 1.46903 * 110.99972 * 138.70398 * 11 10 9 13 13 C 1.50703 * 109.47003 * 169.99858 * 12 11 10 14 14 H 1.07990 * 120.00131 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99746 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99827 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00055 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47216 * 270.00019 * 17 15 13 19 19 H 1.48495 * 109.46940 * 30.00524 * 17 15 13 20 20 H 1.48503 * 109.46954 * 150.00245 * 17 15 13 21 21 C 1.47473 * 87.83867 * 27.00770 * 11 10 9 22 22 C 1.39086 * 120.22698 * 0.22783 * 7 6 5 23 23 C 1.37647 * 119.98765 * 359.48999 * 22 7 6 24 24 C 1.50700 * 120.12164 * 180.25400 * 23 22 7 25 25 H 1.08995 * 109.47453 * 240.00142 * 1 2 3 26 26 H 1.08999 * 109.46911 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.46867 * 119.99807 * 1 2 3 28 28 H 1.08002 * 120.00012 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.87716 * 179.97438 * 6 5 4 30 30 H 1.09006 * 113.26045 * 333.50236 * 9 8 7 31 31 H 1.09000 * 113.47705 * 105.56174 * 10 9 8 32 32 H 1.08996 * 113.47409 * 335.09553 * 10 9 8 33 33 H 1.08996 * 109.47556 * 49.99772 * 12 11 10 34 34 H 1.09002 * 109.47041 * 289.99759 * 12 11 10 35 35 H 0.97008 * 119.99673 * 179.97438 * 16 15 13 36 36 H 1.09005 * 113.47777 * 87.75642 * 21 11 10 37 37 H 1.08997 * 113.48150 * 218.22204 * 21 11 10 38 38 H 1.07999 * 120.00494 * 179.75202 * 22 7 6 39 39 H 1.08994 * 109.47447 * 263.11664 * 24 23 22 40 40 H 1.09004 * 109.47330 * 23.12243 * 24 23 22 41 41 H 1.09003 * 109.46963 * 143.11349 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5491 -2.4828 0.1243 6 6 2.2342 -3.6644 0.1240 7 6 3.6194 -3.6710 0.0007 8 8 4.2926 -4.8488 0.0018 9 6 5.6943 -4.7951 -0.2710 10 6 6.2944 -6.1272 -0.7424 11 7 7.4697 -5.8340 0.0989 12 6 7.9290 -7.0402 0.8005 13 6 9.2614 -6.7672 1.4494 14 1 9.7213 -5.7951 1.3502 15 6 9.8933 -7.7585 2.1698 16 7 11.0559 -7.5201 2.7366 17 14 9.0975 -9.4398 2.3420 18 1 8.2335 -9.4572 3.5497 19 1 8.2734 -9.7228 1.1395 20 1 10.1532 -10.4760 2.4736 21 6 6.5834 -5.0277 0.9586 22 6 4.3175 -2.4739 -0.1186 23 6 3.6361 -1.2779 -0.1253 24 6 4.3889 0.0206 -0.2601 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 0.4734 -2.4825 0.2208 29 1 1.6983 -4.5971 0.2209 30 1 5.9823 -3.9364 -0.8776 31 1 6.5184 -6.1493 -1.8089 32 1 5.7301 -6.9989 -0.4113 33 1 8.0329 -7.8580 0.0874 34 1 7.2020 -7.3149 1.5648 35 1 11.5004 -8.2175 3.2437 36 1 6.0962 -5.6060 1.7436 37 1 7.0523 -4.1180 1.3338 38 1 5.3935 -2.4830 -0.2101 39 1 4.5510 0.4510 0.7281 40 1 5.3509 -0.1650 -0.7378 41 1 3.8093 0.7151 -0.8682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228213777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -27.372359 kcal Electronic energy + Delta-G solvation = -22094.512515 eV Core-core repulsion = 18747.481078 eV Total energy + Delta-G solvation = -3347.031437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92638 -40.98569 -39.67333 -37.82880 -34.99992 -33.91077 -32.42184 -31.59817 -29.96501 -28.16036 -27.39784 -26.97477 -24.71745 -23.10662 -22.68497 -21.14346 -20.67033 -19.20532 -18.95013 -17.70083 -17.36812 -16.82718 -16.55576 -16.34916 -16.06412 -15.80262 -15.34430 -15.16724 -14.94142 -14.60828 -14.23963 -14.17814 -13.98559 -13.83146 -13.72224 -13.41362 -13.13953 -13.05848 -12.91945 -12.75649 -12.63022 -12.51310 -11.93061 -11.82399 -11.70644 -11.50551 -11.34745 -10.83563 -10.46065 -9.93592 -9.84649 -9.27480 -8.33103 -6.38245 -0.28734 0.32562 1.32208 1.34286 1.44472 1.44973 1.97407 2.30601 2.72019 2.98748 3.14371 3.21607 3.26058 3.64607 3.71217 3.82547 3.97128 4.17174 4.19287 4.32747 4.34922 4.50062 4.53906 4.57453 4.60514 4.67741 4.70493 4.71350 4.75423 4.76344 4.81500 4.85682 5.12322 5.19260 5.25127 5.30068 5.38238 5.54629 5.59982 5.67451 5.86095 6.30157 6.45085 6.65070 6.67932 7.25145 8.83882 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.002884 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.468081 B = 9706.119854 C =10115.848932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.393 3.607 3 O -0.500 6.500 4 C -0.236 4.236 5 C -0.013 4.013 6 C -0.178 4.178 7 C 0.155 3.845 8 O -0.303 6.303 9 C 0.067 3.933 10 C 0.004 3.996 11 N -0.477 5.477 12 C 0.141 3.859 13 C -0.522 4.522 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.947 5.947 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.246 1.246 20 H -0.279 1.279 21 C -0.012 4.012 22 C -0.238 4.238 23 C 0.001 3.999 24 C -0.120 4.120 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.180 0.820 29 H 0.154 0.846 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.251 9.811 -7.644 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.276 3.724 3 O -0.380 6.380 4 C -0.237 4.237 5 C -0.031 4.031 6 C -0.196 4.196 7 C 0.109 3.891 8 O -0.215 6.215 9 C 0.010 3.990 10 C -0.125 4.125 11 N -0.200 5.200 12 C 0.013 3.987 13 C -0.560 4.560 14 H 0.051 0.949 15 C -0.191 4.191 16 N -0.588 5.588 17 Si 0.773 3.227 18 H -0.191 1.191 19 H -0.169 1.169 20 H -0.205 1.205 21 C -0.142 4.142 22 C -0.257 4.257 23 C 0.001 3.999 24 C -0.176 4.176 25 H 0.134 0.866 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.197 0.803 29 H 0.172 0.828 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.243 10.329 -7.790 28.365 hybrid contribution 0.344 -1.061 0.881 1.422 sum -24.899 9.268 -6.908 27.452 Atomic orbital electron populations 1.22278 0.90473 1.05747 1.06544 1.22872 0.93339 0.86628 0.69562 1.90500 1.72721 1.35683 1.39077 1.20514 0.93548 0.96259 1.13367 1.21321 1.01686 0.89009 0.91077 1.20497 0.90183 1.00875 1.08039 1.19728 0.92806 0.84512 0.92056 1.86105 1.22325 1.28944 1.84113 1.24223 0.76898 1.00590 0.97277 1.24142 0.90733 0.96176 1.01428 1.68848 1.21418 1.16094 1.13675 1.20511 0.94850 0.90015 0.93309 1.21184 1.04128 0.99113 1.31620 0.94930 1.25931 0.95266 1.03388 0.94543 1.70059 1.17308 1.35723 1.35694 0.85667 0.78692 0.78366 0.79965 1.19079 1.16916 1.20473 1.24366 0.93415 0.99960 0.96424 1.21290 1.01019 0.91755 1.11587 1.20194 0.93469 0.95156 0.91115 1.21057 0.99603 0.93942 1.03008 0.86575 0.89962 0.86626 0.80309 0.82791 0.85559 0.87187 0.90217 0.94715 0.97696 0.92274 0.91172 0.90181 0.84746 0.90942 0.91387 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 9.00 71.24 0.64 -0.82 16 2 C 0.39 6.83 7.15 27.94 0.20 7.03 16 3 O -0.50 -12.29 14.08 -3.07 -0.04 -12.33 16 4 C -0.24 -4.39 5.87 -20.15 -0.12 -4.51 16 5 C -0.01 -0.18 9.41 22.32 0.21 0.03 16 6 C -0.18 -3.11 9.92 22.08 0.22 -2.89 16 7 C 0.16 3.63 6.69 22.67 0.15 3.78 16 8 O -0.30 -8.00 10.17 -89.75 -0.91 -8.91 16 9 C 0.07 1.86 3.94 30.94 0.12 1.98 16 10 C 0.00 0.12 7.52 83.57 0.63 0.75 16 11 N -0.48 -19.40 6.32 -933.02 -5.89 -25.30 16 12 C 0.14 6.68 3.64 85.56 0.31 6.99 16 13 C -0.52 -30.70 9.94 25.60 0.25 -30.45 16 14 H 0.03 2.16 8.06 -2.92 -0.02 2.13 16 15 C 0.01 0.36 5.47 84.65 0.46 0.83 16 16 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 17 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C -0.01 -0.44 7.55 83.57 0.63 0.19 16 22 C -0.24 -5.64 8.62 22.33 0.19 -5.45 16 23 C 0.00 0.03 5.92 -19.57 -0.12 -0.09 16 24 C -0.12 -2.67 8.71 71.24 0.62 -2.05 16 25 H 0.12 0.36 7.90 -2.39 -0.02 0.34 16 26 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 27 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.18 0.81 6.97 -2.91 -0.02 0.79 16 29 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.13 3.16 6.09 -2.38 -0.01 3.15 16 31 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.08 2.35 7.91 -2.39 -0.02 2.33 16 33 H 0.03 1.61 7.14 -2.39 -0.02 1.60 16 34 H 0.01 0.24 6.73 -2.39 -0.02 0.23 16 35 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 36 H 0.07 2.55 7.42 -2.38 -0.02 2.53 16 37 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.13 3.18 5.96 -2.91 -0.02 3.16 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 41 H 0.08 2.00 5.90 -2.39 -0.01 1.98 16 Total: -1.00 -73.43 337.27 0.72 -72.71 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.98 Total: 12.50 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.41 Total: -24.68 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -5.59 Total: -84.74 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.96 Total: -21.25 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -73.43 0.72 -72.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228213777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.334 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds