Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21295 * 120.00086 * 2 1 4 4 C 1.46865 * 119.99904 * 179.97438 * 2 1 3 5 5 C 1.40041 * 120.11039 * 353.46513 * 4 2 1 6 6 C 1.36583 * 120.00077 * 180.02562 * 5 4 2 7 7 C 1.39074 * 120.25003 * 0.23092 * 6 5 4 8 8 O 1.35665 * 119.88690 * 179.74494 * 7 6 5 9 9 C 1.42902 * 117.00018 * 173.84851 * 8 7 6 10 10 H 1.09005 * 110.63766 * 328.27480 * 9 8 7 11 11 C 1.55154 * 110.72293 * 205.13555 * 9 8 7 12 12 C 1.54906 * 101.58483 * 206.13406 * 11 9 8 13 13 N 1.47432 * 104.83119 * 37.00656 * 12 11 9 14 14 C 1.36936 * 125.64929 * 155.84341 * 13 12 11 15 15 H 1.08003 * 119.99256 * 335.67720 * 14 13 12 16 16 C 1.38805 * 120.00199 * 155.68617 * 14 13 12 17 17 N 1.31615 * 120.00284 * 158.02135 * 16 14 13 18 18 Si 1.86801 * 119.99727 * 338.01284 * 16 14 13 19 19 H 1.48498 * 109.47032 * 84.29935 * 18 16 14 20 20 H 1.48506 * 109.47016 * 204.29628 * 18 16 14 21 21 H 1.48498 * 109.47481 * 324.29604 * 18 16 14 22 22 C 1.47020 * 108.70046 * 335.87168 * 13 12 11 23 23 C 1.39080 * 120.22819 * 359.48968 * 7 6 5 24 24 C 1.37650 * 119.98415 * 0.53496 * 23 7 6 25 25 C 1.50705 * 120.12139 * 179.74298 * 24 23 7 26 26 H 1.08997 * 109.47135 * 270.00667 * 1 2 3 27 27 H 1.09004 * 109.47203 * 30.00366 * 1 2 3 28 28 H 1.09004 * 109.47275 * 150.00647 * 1 2 3 29 29 H 1.07998 * 119.99809 * 359.97438 * 5 4 2 30 30 H 1.08005 * 119.87214 * 179.97438 * 6 5 4 31 31 H 1.08998 * 111.00026 * 324.20712 * 11 9 8 32 32 H 1.09004 * 111.00489 * 88.05379 * 11 9 8 33 33 H 1.08991 * 110.37020 * 155.84413 * 12 11 9 34 34 H 1.08997 * 110.36622 * 278.06242 * 12 11 9 35 35 H 0.97004 * 120.00258 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.88477 * 241.64364 * 22 13 12 37 37 H 1.09001 * 109.88395 * 120.47968 * 22 13 12 38 38 H 1.07999 * 120.00861 * 180.25213 * 23 7 6 39 39 H 1.08990 * 109.47330 * 262.66137 * 25 24 23 40 40 H 1.09004 * 109.46877 * 22.66347 * 25 24 23 41 41 H 1.09007 * 109.47062 * 142.65613 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 1.5502 -2.4820 0.1390 6 6 2.2354 -3.6636 0.1397 7 6 3.6199 -3.6706 0.0082 8 8 4.2936 -4.8482 0.0151 9 6 5.6951 -4.7954 -0.2590 10 1 5.9218 -3.9800 -0.9459 11 6 6.1942 -6.1490 -0.8300 12 6 7.6863 -6.1308 -0.4142 13 7 7.6995 -5.4961 0.9165 14 6 8.6665 -5.6643 1.8713 15 1 9.2752 -6.5565 1.8721 16 6 8.8643 -4.6884 2.8383 17 7 9.4493 -4.9980 3.9759 18 14 8.3004 -2.9353 2.5249 19 1 6.8624 -2.8082 2.8731 20 1 9.0967 -2.0021 3.3618 21 1 8.4938 -2.6019 1.0908 22 6 6.5022 -4.6532 1.0486 23 6 4.3157 -2.4750 -0.1357 24 6 3.6349 -1.2787 -0.1372 25 6 4.3863 0.0190 -0.2871 26 1 -0.3633 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8901 -0.5137 29 1 0.4756 -2.4809 0.2460 30 1 1.7004 -4.5956 0.2470 31 1 5.6699 -6.9852 -0.3674 32 1 6.0911 -6.1773 -1.9147 33 1 8.0757 -7.1470 -0.3536 34 1 8.2703 -5.5431 -1.1224 35 1 9.5872 -4.3161 4.6518 36 1 6.7951 -3.6131 1.1923 37 1 5.9021 -4.9915 1.8933 38 1 5.3905 -2.4849 -0.2416 39 1 4.5552 0.4568 0.6966 40 1 5.3450 -0.1701 -0.7702 41 1 3.8022 0.7088 -0.8964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228215649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -15.353161 kcal Electronic energy + Delta-G solvation = -23024.999363 eV Core-core repulsion = 19678.489118 eV Total energy + Delta-G solvation = -3346.510245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69555 -39.53444 -37.81639 -36.39751 -33.05734 -32.51775 -31.42948 -29.84833 -29.10770 -28.31003 -26.97391 -24.64292 -23.45724 -21.94978 -20.95662 -20.35342 -19.85619 -17.95595 -17.12791 -16.69204 -16.37267 -16.07532 -15.31091 -14.86992 -14.63291 -14.55016 -14.21799 -13.72404 -13.38100 -13.34331 -13.10647 -12.89642 -12.70880 -12.59840 -12.42047 -12.30249 -12.21039 -11.94024 -11.75033 -11.32641 -11.25130 -11.01267 -10.75539 -10.61608 -10.29884 -9.95544 -9.60445 -9.49215 -9.00547 -8.66343 -8.25189 -7.11588 -6.03585 -3.37926 0.63488 1.24437 2.31108 3.13939 3.29383 3.40073 3.44308 3.64276 3.97404 4.47105 4.57018 4.59429 4.77278 4.84079 4.90777 5.01912 5.08998 5.12236 5.14648 5.19803 5.28933 5.35929 5.40379 5.57469 5.66563 5.71860 5.72729 5.76526 5.86323 6.04837 6.08273 6.11241 6.17324 6.26035 6.42072 6.44178 6.48196 6.64628 6.66097 7.41793 7.45286 7.65453 8.24110 8.74278 9.59738 10.07637 11.12661 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.004718 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.311944 B = 5933.001210 C = 6818.412376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.397 3.603 3 O -0.464 6.464 4 C -0.230 4.230 5 C -0.030 4.030 6 C -0.176 4.176 7 C 0.181 3.819 8 O -0.295 6.295 9 C 0.065 3.935 10 H 0.084 0.916 11 C -0.123 4.123 12 C 0.131 3.869 13 N -0.605 5.605 14 C -0.248 4.248 15 H 0.094 0.906 16 C 0.029 3.971 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.283 1.283 20 H -0.300 1.300 21 H -0.278 1.278 22 C 0.104 3.896 23 C -0.231 4.231 24 C 0.022 3.978 25 C -0.125 4.125 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.030 0.970 37 H 0.053 0.947 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.840 5.438 -11.326 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.342 6.342 4 C -0.231 4.231 5 C -0.048 4.048 6 C -0.194 4.194 7 C 0.133 3.867 8 O -0.206 6.206 9 C 0.009 3.991 10 H 0.102 0.898 11 C -0.161 4.161 12 C 0.006 3.994 13 N -0.333 5.333 14 C -0.375 4.375 15 H 0.111 0.889 16 C -0.171 4.171 17 N -0.545 5.545 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.227 1.227 21 H -0.204 1.204 22 C -0.021 4.021 23 C -0.249 4.249 24 C 0.022 3.978 25 C -0.181 4.181 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.439 5.804 -11.059 21.450 hybrid contribution -0.083 1.047 0.037 1.051 sum -17.522 6.851 -11.022 21.805 Atomic orbital electron populations 1.22227 0.94189 1.04643 1.04581 1.22264 0.91360 0.87628 0.71036 1.90502 1.71552 1.34658 1.37458 1.20154 0.93813 0.94921 1.14212 1.20908 0.99726 0.90604 0.93542 1.20132 0.90957 0.99399 1.08948 1.19456 0.91897 0.85102 0.90224 1.86100 1.22906 1.27841 1.83781 1.23722 0.77133 1.00226 0.98047 0.89844 1.22899 0.97639 0.95572 1.00021 1.21676 0.92167 0.98007 0.87531 1.44600 1.21372 1.54584 1.12773 1.18630 1.11763 1.03010 1.04078 0.88881 1.25096 0.98158 0.97756 0.96063 1.69824 1.46158 1.33521 1.05002 0.86967 0.77461 0.86872 0.77539 1.21057 1.22743 1.20424 1.22072 0.89385 0.95499 0.95156 1.21320 1.01050 0.91653 1.10898 1.19999 0.92379 0.95250 0.90195 1.21127 0.99352 0.94099 1.03485 0.88645 0.89654 0.89675 0.84526 0.84541 0.89770 0.90571 0.92333 0.95270 0.92511 0.95256 0.92920 0.84601 0.90230 0.92032 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 9.61 36.01 0.35 -1.04 16 2 C 0.40 4.51 7.15 -30.82 -0.22 4.29 16 3 O -0.46 -6.60 14.11 5.54 0.08 -6.52 16 4 C -0.23 -2.86 5.87 -105.06 -0.62 -3.47 16 5 C -0.03 -0.31 9.26 -39.50 -0.37 -0.67 16 6 C -0.18 -2.15 9.92 -39.87 -0.40 -2.54 16 7 C 0.18 2.73 6.69 -38.96 -0.26 2.47 16 8 O -0.29 -4.86 9.85 -18.70 -0.18 -5.04 16 9 C 0.06 1.12 2.74 -24.90 -0.07 1.05 16 10 H 0.08 1.32 6.18 -51.93 -0.32 1.00 16 11 C -0.12 -1.91 6.81 -24.59 -0.17 -2.08 16 12 C 0.13 2.48 7.23 -2.53 -0.02 2.46 16 13 N -0.60 -14.59 3.12 -170.08 -0.53 -15.13 16 14 C -0.25 -7.03 10.54 -15.06 -0.16 -7.19 16 15 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 16 C 0.03 0.85 5.43 -17.43 -0.09 0.76 16 17 N -0.90 -27.87 13.97 55.49 0.78 -27.10 16 18 Si 0.88 22.90 24.51 -169.99 -4.17 18.74 16 19 H -0.28 -7.24 6.78 56.52 0.38 -6.86 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.28 -7.03 7.04 56.52 0.40 -6.63 16 22 C 0.10 2.30 5.14 -3.07 -0.02 2.29 16 23 C -0.23 -3.57 8.53 -39.48 -0.34 -3.91 16 24 C 0.02 0.32 5.92 -104.16 -0.62 -0.30 16 25 C -0.12 -1.70 8.70 36.01 0.31 -1.38 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.42 6.74 -51.93 -0.35 0.07 16 29 H 0.14 0.90 6.53 -52.49 -0.34 0.56 16 30 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.03 0.70 3.18 -51.93 -0.17 0.54 16 37 H 0.05 1.26 8.06 -51.93 -0.42 0.84 16 38 H 0.14 2.19 5.66 -52.49 -0.30 1.89 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 41 H 0.09 1.23 5.93 -51.92 -0.31 0.92 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -32.93 327.76 -7.35 -40.28 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.58 Total: -0.91 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.68 Total: -9.26 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.24 Total: -42.22 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.11 Total: -11.56 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.17 Total: 18.74 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.93 -7.35 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228215649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.927 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds