Wall clock time and date at job start Tue Mar 31 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21295 * 120.00086 * 2 1 4 4 C 1.46865 * 119.99904 * 179.97438 * 2 1 3 5 5 C 1.40041 * 120.11039 * 353.46513 * 4 2 1 6 6 C 1.36583 * 120.00077 * 180.02562 * 5 4 2 7 7 C 1.39074 * 120.25003 * 0.23092 * 6 5 4 8 8 O 1.35665 * 119.88690 * 179.74494 * 7 6 5 9 9 C 1.42902 * 117.00018 * 173.84851 * 8 7 6 10 10 H 1.09005 * 110.63766 * 328.27480 * 9 8 7 11 11 C 1.55154 * 110.72293 * 205.13555 * 9 8 7 12 12 C 1.54906 * 101.58483 * 206.13406 * 11 9 8 13 13 N 1.47432 * 104.83119 * 37.00656 * 12 11 9 14 14 C 1.36936 * 125.64929 * 155.84341 * 13 12 11 15 15 H 1.08003 * 119.99256 * 335.67720 * 14 13 12 16 16 C 1.38805 * 120.00199 * 155.68617 * 14 13 12 17 17 N 1.31615 * 120.00284 * 158.02135 * 16 14 13 18 18 Si 1.86801 * 119.99727 * 338.01284 * 16 14 13 19 19 H 1.48498 * 109.47032 * 84.29935 * 18 16 14 20 20 H 1.48506 * 109.47016 * 204.29628 * 18 16 14 21 21 H 1.48498 * 109.47481 * 324.29604 * 18 16 14 22 22 C 1.47020 * 108.70046 * 335.87168 * 13 12 11 23 23 C 1.39080 * 120.22819 * 359.48968 * 7 6 5 24 24 C 1.37650 * 119.98415 * 0.53496 * 23 7 6 25 25 C 1.50705 * 120.12139 * 179.74298 * 24 23 7 26 26 H 1.08997 * 109.47135 * 270.00667 * 1 2 3 27 27 H 1.09004 * 109.47203 * 30.00366 * 1 2 3 28 28 H 1.09004 * 109.47275 * 150.00647 * 1 2 3 29 29 H 1.07998 * 119.99809 * 359.97438 * 5 4 2 30 30 H 1.08005 * 119.87214 * 179.97438 * 6 5 4 31 31 H 1.08998 * 111.00026 * 324.20712 * 11 9 8 32 32 H 1.09004 * 111.00489 * 88.05379 * 11 9 8 33 33 H 1.08991 * 110.37020 * 155.84413 * 12 11 9 34 34 H 1.08997 * 110.36622 * 278.06242 * 12 11 9 35 35 H 0.97004 * 120.00258 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.88477 * 241.64364 * 22 13 12 37 37 H 1.09001 * 109.88395 * 120.47968 * 22 13 12 38 38 H 1.07999 * 120.00861 * 180.25213 * 23 7 6 39 39 H 1.08990 * 109.47330 * 262.66137 * 25 24 23 40 40 H 1.09004 * 109.46877 * 22.66347 * 25 24 23 41 41 H 1.09007 * 109.47062 * 142.65613 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 1.5502 -2.4820 0.1390 6 6 2.2354 -3.6636 0.1397 7 6 3.6199 -3.6706 0.0082 8 8 4.2936 -4.8482 0.0151 9 6 5.6951 -4.7954 -0.2590 10 1 5.9218 -3.9800 -0.9459 11 6 6.1942 -6.1490 -0.8300 12 6 7.6863 -6.1308 -0.4142 13 7 7.6995 -5.4961 0.9165 14 6 8.6665 -5.6643 1.8713 15 1 9.2752 -6.5565 1.8721 16 6 8.8643 -4.6884 2.8383 17 7 9.4493 -4.9980 3.9759 18 14 8.3004 -2.9353 2.5249 19 1 6.8624 -2.8082 2.8731 20 1 9.0967 -2.0021 3.3618 21 1 8.4938 -2.6019 1.0908 22 6 6.5022 -4.6532 1.0486 23 6 4.3157 -2.4750 -0.1357 24 6 3.6349 -1.2787 -0.1372 25 6 4.3863 0.0190 -0.2871 26 1 -0.3633 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8901 -0.5137 29 1 0.4756 -2.4809 0.2460 30 1 1.7004 -4.5956 0.2470 31 1 5.6699 -6.9852 -0.3674 32 1 6.0911 -6.1773 -1.9147 33 1 8.0757 -7.1470 -0.3536 34 1 8.2703 -5.5431 -1.1224 35 1 9.5872 -4.3161 4.6518 36 1 6.7951 -3.6131 1.1923 37 1 5.9021 -4.9915 1.8933 38 1 5.3905 -2.4849 -0.2416 39 1 4.5552 0.4568 0.6966 40 1 5.3450 -0.1701 -0.7702 41 1 3.8022 0.7088 -0.8964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228215649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:50 Heat of formation + Delta-G solvation = -36.183672 kcal Electronic energy + Delta-G solvation = -23025.902642 eV Core-core repulsion = 19678.489118 eV Total energy + Delta-G solvation = -3347.413524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76986 -40.62757 -39.08720 -37.74863 -34.61291 -33.96719 -32.47659 -31.50475 -30.00583 -29.81917 -27.98996 -26.46027 -24.65060 -23.02336 -22.51106 -21.76300 -20.81722 -19.24979 -19.01789 -17.98168 -17.62259 -17.27139 -16.41932 -16.12416 -15.93378 -15.61691 -15.58990 -15.17115 -14.92391 -14.44422 -14.32369 -14.27113 -14.13438 -13.94714 -13.73827 -13.24374 -13.16586 -13.01747 -12.96569 -12.83973 -12.78823 -12.52357 -12.36319 -12.09883 -11.83001 -11.62139 -11.36738 -10.83593 -10.50738 -10.00940 -9.33489 -9.13062 -8.30253 -5.59620 -0.33834 0.25624 1.18535 1.24764 1.34116 1.40143 1.93378 2.29449 2.66664 2.90812 3.17513 3.27670 3.45102 3.61619 3.63459 3.66971 3.83739 4.01374 4.13218 4.26580 4.31306 4.34882 4.50869 4.52070 4.60091 4.61270 4.65856 4.70788 4.75167 4.81074 4.89970 4.93255 5.06919 5.10754 5.18827 5.23892 5.26843 5.47142 5.62400 5.63445 6.01425 6.24476 6.61141 6.64621 7.41496 7.98765 8.89987 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.004718 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.311944 B = 5933.001210 C = 6818.412376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.394 3.606 3 O -0.501 6.501 4 C -0.235 4.235 5 C -0.011 4.011 6 C -0.173 4.173 7 C 0.154 3.846 8 O -0.300 6.300 9 C 0.077 3.923 10 H 0.099 0.901 11 C -0.106 4.106 12 C 0.123 3.877 13 N -0.625 5.625 14 C -0.238 4.238 15 H 0.068 0.932 16 C -0.026 4.026 17 N -0.948 5.948 18 Si 0.938 3.062 19 H -0.283 1.283 20 H -0.303 1.303 21 H -0.268 1.268 22 C 0.100 3.900 23 C -0.248 4.248 24 C -0.001 4.001 25 C -0.121 4.121 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.186 0.814 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.393 5.646 -13.349 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.277 3.723 3 O -0.381 6.381 4 C -0.236 4.236 5 C -0.029 4.029 6 C -0.191 4.191 7 C 0.107 3.893 8 O -0.212 6.212 9 C 0.021 3.979 10 H 0.117 0.883 11 C -0.144 4.144 12 C -0.001 4.001 13 N -0.353 5.353 14 C -0.366 4.366 15 H 0.086 0.914 16 C -0.222 4.222 17 N -0.593 5.593 18 Si 0.769 3.231 19 H -0.210 1.210 20 H -0.231 1.231 21 H -0.194 1.194 22 C -0.025 4.025 23 C -0.266 4.266 24 C -0.002 4.002 25 C -0.177 4.177 26 H 0.132 0.868 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.203 0.797 30 H 0.178 0.822 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.023 6.004 -13.131 25.504 hybrid contribution 0.944 0.937 0.645 1.478 sum -20.079 6.941 -12.486 24.642 Atomic orbital electron populations 1.22262 0.90064 1.06372 1.06197 1.22898 0.93473 0.86438 0.69482 1.90498 1.72770 1.35661 1.39144 1.20556 0.93211 0.96678 1.13172 1.21402 1.01883 0.88825 0.90773 1.20528 0.89727 1.01182 1.07699 1.19812 0.93133 0.84393 0.91950 1.86083 1.21993 1.28616 1.84467 1.23523 0.77375 1.01794 0.95257 0.88331 1.22863 0.94514 0.94482 1.02562 1.21946 0.95174 0.97845 0.85135 1.44739 1.21145 1.55098 1.14296 1.18632 1.11577 1.01815 1.04620 0.91423 1.25651 0.99454 1.01014 0.96059 1.69932 1.48932 1.34429 1.06046 0.86031 0.76792 0.82639 0.77663 1.21030 1.23146 1.19366 1.22080 0.89072 0.93924 0.97419 1.21272 1.00496 0.92531 1.12344 1.20186 0.93784 0.94851 0.91355 1.21068 0.99576 0.94165 1.02887 0.86773 0.89121 0.86848 0.79658 0.82150 0.89624 0.86177 0.91902 0.93806 0.92654 0.96761 0.95533 0.86171 0.91313 0.91839 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.61 71.24 0.68 -1.12 16 2 C 0.39 7.94 7.15 27.95 0.20 8.14 16 3 O -0.50 -13.74 14.11 -3.07 -0.04 -13.78 16 4 C -0.24 -5.25 5.87 -20.15 -0.12 -5.37 16 5 C -0.01 -0.19 9.26 22.32 0.21 0.02 16 6 C -0.17 -3.61 9.92 22.08 0.22 -3.40 16 7 C 0.15 4.38 6.69 22.67 0.15 4.53 16 8 O -0.30 -9.34 9.85 -89.82 -0.88 -10.22 16 9 C 0.08 2.54 2.74 31.78 0.09 2.62 16 10 H 0.10 2.96 6.18 -2.38 -0.01 2.94 16 11 C -0.11 -3.00 6.81 31.98 0.22 -2.78 16 12 C 0.12 4.44 7.23 86.85 0.63 5.07 16 13 N -0.62 -30.21 3.12 -692.00 -2.16 -32.38 16 14 C -0.24 -13.84 10.54 84.03 0.89 -12.95 16 15 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 16 C -0.03 -1.56 5.43 84.86 0.46 -1.10 16 17 N -0.95 -60.65 13.97 21.65 0.30 -60.35 16 18 Si 0.94 48.95 24.51 68.60 1.68 50.63 16 19 H -0.28 -14.53 6.78 99.48 0.67 -13.86 16 20 H -0.30 -15.80 7.11 99.48 0.71 -15.10 16 21 H -0.27 -13.33 7.04 99.48 0.70 -12.63 16 22 C 0.10 4.45 5.14 86.73 0.45 4.89 16 23 C -0.25 -7.52 8.53 22.33 0.19 -7.33 16 24 C 0.00 -0.04 5.92 -19.57 -0.12 -0.15 16 25 C -0.12 -3.33 8.70 71.24 0.62 -2.71 16 26 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.11 0.43 6.74 -2.38 -0.02 0.42 16 29 H 0.19 1.20 6.53 -2.91 -0.02 1.18 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 36 H 0.02 0.71 3.18 -2.38 -0.01 0.70 16 37 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 38 H 0.12 3.91 5.66 -2.91 -0.02 3.89 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.64 8.03 -2.38 -0.02 1.62 16 41 H 0.09 2.49 5.93 -2.38 -0.01 2.48 16 Total: -1.00 -75.52 327.76 4.66 -70.87 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.00 Total: 6.87 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.76 Total: -11.64 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -1.86 Total: -92.72 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.93 Total: -24.00 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.68 Total: 50.63 kcal Total: -75.52 4.66 -70.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228215649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.682 kcal (2) G-P(sol) polarization free energy of solvation -75.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds