Wall clock time and date at job start Tue Mar 31 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21250 * 119.99803 * 2 1 4 4 C 1.47178 * 120.00017 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.14415 * 0.02562 * 4 2 1 6 6 C 1.37898 * 119.93677 * 180.02562 * 5 4 2 7 7 C 1.38336 * 120.23320 * 359.96933 * 6 5 4 8 8 C 1.50700 * 119.85031 * 180.02562 * 7 6 5 9 9 C 1.38852 * 120.29414 * 0.28529 * 7 6 5 10 10 O 1.35913 * 119.96738 * 179.72266 * 9 7 6 11 11 C 1.42898 * 116.99454 * 184.96062 * 10 9 7 12 12 H 1.08994 * 110.64793 * 39.23866 * 11 10 9 13 13 C 1.55160 * 110.71760 * 162.57846 * 11 10 9 14 14 C 1.54909 * 101.58167 * 153.86159 * 13 11 10 15 15 N 1.47417 * 104.83319 * 322.99002 * 14 13 11 16 16 C 1.36946 * 125.64825 * 204.09407 * 15 14 13 17 17 H 1.07999 * 119.99899 * 168.03476 * 16 15 14 18 18 C 1.38817 * 119.99591 * 348.03644 * 16 15 14 19 19 N 1.31608 * 120.00208 * 350.89892 * 18 16 15 20 20 Si 1.86802 * 119.99446 * 170.90157 * 18 16 15 21 21 H 1.48489 * 109.47307 * 94.89583 * 20 18 16 22 22 H 1.48506 * 109.46864 * 214.89888 * 20 18 16 23 23 H 1.48502 * 109.47211 * 334.89063 * 20 18 16 24 24 C 1.47016 * 108.70454 * 24.12530 * 15 14 13 25 25 C 1.38425 * 120.05929 * 359.48244 * 9 7 6 26 26 H 1.09002 * 109.47230 * 269.99885 * 1 2 3 27 27 H 1.08998 * 109.47000 * 30.00288 * 1 2 3 28 28 H 1.09002 * 109.46861 * 150.00501 * 1 2 3 29 29 H 1.07999 * 120.03509 * 0.03795 * 5 4 2 30 30 H 1.07997 * 119.88323 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47248 * 90.00527 * 8 7 6 32 32 H 1.09001 * 109.47150 * 330.00266 * 8 7 6 33 33 H 1.08999 * 109.46970 * 210.00404 * 8 7 6 34 34 H 1.09003 * 110.99891 * 271.93172 * 13 11 10 35 35 H 1.08993 * 111.00784 * 35.78435 * 13 11 10 36 36 H 1.08996 * 110.36525 * 204.14541 * 14 13 11 37 37 H 1.09004 * 110.36842 * 81.82604 * 14 13 11 38 38 H 0.97008 * 119.99935 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.88889 * 239.52376 * 24 15 14 40 40 H 1.09001 * 110.00896 * 118.43249 * 24 15 14 41 41 H 1.07995 * 120.12033 * 180.25774 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5466 -2.4877 0.0006 6 6 2.2404 -3.6795 0.0016 7 6 3.6238 -3.6801 0.0021 8 6 4.3733 -4.9875 0.0027 9 6 4.3247 -2.4815 0.0074 10 8 5.6838 -2.4899 0.0135 11 6 6.3398 -1.2256 0.1288 12 1 5.8111 -0.5810 0.8310 13 6 7.8197 -1.4119 0.5560 14 6 8.4745 -0.1340 -0.0253 15 7 7.7840 0.0940 -1.3076 16 6 8.2903 0.7874 -2.3745 17 1 7.7963 0.7388 -3.3337 18 6 9.4386 1.5526 -2.2230 19 7 9.9390 1.7580 -1.0233 20 14 10.2735 2.2907 -3.7223 21 1 9.7960 3.6828 -3.9195 22 1 11.7443 2.2960 -3.5173 23 1 9.9440 1.4796 -4.9218 24 6 6.4615 -0.5457 -1.2512 25 6 3.6406 -1.2781 0.0015 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 0.4666 -2.4911 -0.0005 30 1 1.7019 -4.6156 0.0012 31 1 4.5544 -5.3029 -1.0248 32 1 3.7817 -5.7452 0.5165 33 1 5.3259 -4.8599 0.5168 34 1 7.9124 -1.4392 1.6417 35 1 8.2462 -2.3085 0.1064 36 1 9.5396 -0.2954 -0.1913 37 1 8.3180 0.7110 0.6453 38 1 10.7416 2.2925 -0.9175 39 1 6.3766 -1.2921 -2.0410 40 1 5.6791 0.2047 -1.3650 41 1 4.1848 -0.3453 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228350854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:14 Heat of formation + Delta-G solvation = -26.417787 kcal Electronic energy + Delta-G solvation = -22874.119846 eV Core-core repulsion = 19527.129802 eV Total energy + Delta-G solvation = -3346.990043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53574 -39.19656 -37.76298 -36.04958 -33.13677 -32.22540 -30.82292 -29.83096 -29.14142 -27.51677 -26.92551 -24.57912 -22.69190 -22.56000 -20.55318 -20.10901 -19.73620 -17.66373 -17.02014 -16.25926 -16.04675 -15.35332 -15.16720 -14.86139 -14.74804 -14.56777 -14.12451 -13.86755 -13.72578 -13.15028 -12.78276 -12.56948 -12.43282 -12.40809 -12.24960 -11.99452 -11.76433 -11.66352 -11.44440 -11.18305 -10.89884 -10.79527 -10.51971 -10.27388 -10.04773 -9.91102 -9.79402 -9.72964 -8.91972 -8.61801 -8.10029 -6.83239 -5.77381 -3.11129 0.57864 1.36344 2.35097 3.36902 3.40703 3.45775 3.48584 3.70704 3.92422 4.48802 4.66197 4.77196 4.91888 4.95181 5.06936 5.15627 5.20205 5.27154 5.37540 5.40714 5.47770 5.56087 5.60316 5.63034 5.65428 5.72135 5.79241 6.07506 6.17873 6.22061 6.25482 6.35140 6.38025 6.45042 6.54619 6.62451 6.79081 7.39811 7.45156 7.51383 7.62919 7.75408 8.21850 9.16004 9.77232 10.43731 11.36275 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.004244 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.038676 B = 6595.845789 C = 7593.368595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.390 3.610 3 O -0.451 6.451 4 C -0.141 4.141 5 C -0.115 4.115 6 C -0.101 4.101 7 C -0.092 4.092 8 C -0.109 4.109 9 C 0.128 3.872 10 O -0.299 6.299 11 C 0.069 3.931 12 H 0.077 0.923 13 C -0.134 4.134 14 C 0.174 3.826 15 N -0.598 5.598 16 C -0.231 4.231 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.117 3.883 25 C -0.146 4.146 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.254 0.746 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 -12.161 5.016 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.268 3.732 3 O -0.326 6.326 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.093 4.093 8 C -0.165 4.165 9 C 0.082 3.918 10 O -0.212 6.212 11 C 0.013 3.987 12 H 0.095 0.905 13 C -0.173 4.173 14 C 0.050 3.950 15 N -0.326 5.326 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.565 5.565 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.010 4.010 25 C -0.165 4.165 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.943 -11.622 4.957 21.136 hybrid contribution 0.275 0.675 -0.747 1.043 sum -16.669 -10.947 4.210 20.381 Atomic orbital electron populations 1.22220 0.93774 1.04860 1.04636 1.22549 0.91650 0.87715 0.71332 1.90589 1.72095 1.34275 1.35617 1.20277 0.93670 0.94861 1.05442 1.21251 0.99794 0.91281 1.01050 1.20788 0.92471 0.98210 1.00422 1.19540 0.93417 0.93775 1.02528 1.20676 1.00400 0.92813 1.02638 1.18806 0.83750 0.93013 0.96244 1.86152 1.14733 1.33308 1.87037 1.23679 0.94020 0.82524 0.98512 0.90502 1.23160 0.91765 1.02163 1.00191 1.21430 0.97160 0.90239 0.86218 1.44334 1.11391 1.62613 1.14215 1.19025 1.07568 1.21177 0.88167 0.90586 1.24848 0.99458 0.98980 0.96852 1.69933 1.23716 1.42911 1.19936 0.86096 0.78781 0.79008 0.81858 1.21509 1.21521 1.20512 1.21765 0.90091 0.95404 0.93706 1.21725 0.94249 0.98418 1.02078 0.88553 0.89455 0.89502 0.85105 0.85025 0.90996 0.91664 0.90682 0.91286 0.90743 0.90777 0.94916 0.93586 0.94806 0.95447 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 9.75 36.01 0.35 -1.20 16 2 C 0.39 5.04 7.23 -30.68 -0.22 4.81 16 3 O -0.45 -7.80 17.09 5.58 0.10 -7.70 16 4 C -0.14 -1.86 5.87 -105.08 -0.62 -2.48 16 5 C -0.12 -1.15 9.36 -39.09 -0.37 -1.52 16 6 C -0.10 -1.01 9.67 -39.67 -0.38 -1.40 16 7 C -0.09 -1.15 5.90 -104.36 -0.62 -1.76 16 8 C -0.11 -1.14 9.78 36.01 0.35 -0.78 16 9 C 0.13 1.98 6.58 -39.29 -0.26 1.72 16 10 O -0.30 -5.17 8.90 -19.47 -0.17 -5.34 16 11 C 0.07 1.30 2.78 -24.89 -0.07 1.23 16 12 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 13 C -0.13 -2.59 6.81 -24.58 -0.17 -2.75 16 14 C 0.17 4.26 5.39 -2.53 -0.01 4.25 16 15 N -0.60 -15.86 3.39 -170.08 -0.58 -16.44 16 16 C -0.23 -6.65 10.23 -15.05 -0.15 -6.80 16 17 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 18 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 19 N -0.92 -27.19 10.75 55.49 0.60 -26.60 16 20 Si 0.91 22.40 29.56 -169.99 -5.03 17.37 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.12 2.62 6.46 -3.07 -0.02 2.60 16 25 C -0.15 -2.31 8.29 -38.94 -0.32 -2.63 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.48 6.47 -51.93 -0.34 0.14 16 29 H 0.13 0.84 6.35 -52.49 -0.33 0.51 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.07 0.87 7.51 -51.93 -0.39 0.48 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 1.97 7.06 -51.93 -0.37 1.61 16 37 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 40 H 0.03 0.64 7.35 -51.93 -0.38 0.25 16 41 H 0.14 2.57 4.83 -52.49 -0.25 2.32 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -33.03 335.82 -8.37 -41.40 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.74 Total: -0.82 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.60 Total: -6.92 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.02 Total: -43.04 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.03 -8.37 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228350854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.979 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds