Wall clock time and date at job start Tue Mar 31 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21250 * 119.99803 * 2 1 4 4 C 1.47178 * 120.00017 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.14415 * 0.02562 * 4 2 1 6 6 C 1.37898 * 119.93677 * 180.02562 * 5 4 2 7 7 C 1.38336 * 120.23320 * 359.96933 * 6 5 4 8 8 C 1.50700 * 119.85031 * 180.02562 * 7 6 5 9 9 C 1.38852 * 120.29414 * 0.28529 * 7 6 5 10 10 O 1.35913 * 119.96738 * 179.72266 * 9 7 6 11 11 C 1.42898 * 116.99454 * 184.96062 * 10 9 7 12 12 H 1.08994 * 110.64793 * 39.23866 * 11 10 9 13 13 C 1.55160 * 110.71760 * 162.57846 * 11 10 9 14 14 C 1.54909 * 101.58167 * 153.86159 * 13 11 10 15 15 N 1.47417 * 104.83319 * 322.99002 * 14 13 11 16 16 C 1.36946 * 125.64825 * 204.09407 * 15 14 13 17 17 H 1.07999 * 119.99899 * 168.03476 * 16 15 14 18 18 C 1.38817 * 119.99591 * 348.03644 * 16 15 14 19 19 N 1.31608 * 120.00208 * 350.89892 * 18 16 15 20 20 Si 1.86802 * 119.99446 * 170.90157 * 18 16 15 21 21 H 1.48489 * 109.47307 * 94.89583 * 20 18 16 22 22 H 1.48506 * 109.46864 * 214.89888 * 20 18 16 23 23 H 1.48502 * 109.47211 * 334.89063 * 20 18 16 24 24 C 1.47016 * 108.70454 * 24.12530 * 15 14 13 25 25 C 1.38425 * 120.05929 * 359.48244 * 9 7 6 26 26 H 1.09002 * 109.47230 * 269.99885 * 1 2 3 27 27 H 1.08998 * 109.47000 * 30.00288 * 1 2 3 28 28 H 1.09002 * 109.46861 * 150.00501 * 1 2 3 29 29 H 1.07999 * 120.03509 * 0.03795 * 5 4 2 30 30 H 1.07997 * 119.88323 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47248 * 90.00527 * 8 7 6 32 32 H 1.09001 * 109.47150 * 330.00266 * 8 7 6 33 33 H 1.08999 * 109.46970 * 210.00404 * 8 7 6 34 34 H 1.09003 * 110.99891 * 271.93172 * 13 11 10 35 35 H 1.08993 * 111.00784 * 35.78435 * 13 11 10 36 36 H 1.08996 * 110.36525 * 204.14541 * 14 13 11 37 37 H 1.09004 * 110.36842 * 81.82604 * 14 13 11 38 38 H 0.97008 * 119.99935 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.88889 * 239.52376 * 24 15 14 40 40 H 1.09001 * 110.00896 * 118.43249 * 24 15 14 41 41 H 1.07995 * 120.12033 * 180.25774 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5466 -2.4877 0.0006 6 6 2.2404 -3.6795 0.0016 7 6 3.6238 -3.6801 0.0021 8 6 4.3733 -4.9875 0.0027 9 6 4.3247 -2.4815 0.0074 10 8 5.6838 -2.4899 0.0135 11 6 6.3398 -1.2256 0.1288 12 1 5.8111 -0.5810 0.8310 13 6 7.8197 -1.4119 0.5560 14 6 8.4745 -0.1340 -0.0253 15 7 7.7840 0.0940 -1.3076 16 6 8.2903 0.7874 -2.3745 17 1 7.7963 0.7388 -3.3337 18 6 9.4386 1.5526 -2.2230 19 7 9.9390 1.7580 -1.0233 20 14 10.2735 2.2907 -3.7223 21 1 9.7960 3.6828 -3.9195 22 1 11.7443 2.2960 -3.5173 23 1 9.9440 1.4796 -4.9218 24 6 6.4615 -0.5457 -1.2512 25 6 3.6406 -1.2781 0.0015 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 0.4666 -2.4911 -0.0005 30 1 1.7019 -4.6156 0.0012 31 1 4.5544 -5.3029 -1.0248 32 1 3.7817 -5.7452 0.5165 33 1 5.3259 -4.8599 0.5168 34 1 7.9124 -1.4392 1.6417 35 1 8.2462 -2.3085 0.1064 36 1 9.5396 -0.2954 -0.1913 37 1 8.3180 0.7110 0.6453 38 1 10.7416 2.2925 -0.9175 39 1 6.3766 -1.2921 -2.0410 40 1 5.6791 0.2047 -1.3650 41 1 4.1848 -0.3453 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228350854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:13 Heat of formation + Delta-G solvation = -46.708544 kcal Electronic energy + Delta-G solvation = -22874.999719 eV Core-core repulsion = 19527.129802 eV Total energy + Delta-G solvation = -3347.869917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66781 -40.39388 -39.11484 -37.60211 -34.49500 -33.88730 -31.81446 -31.25552 -30.49425 -29.28653 -27.83143 -26.58114 -23.87386 -23.53953 -22.36833 -21.58959 -20.94109 -19.04339 -18.83255 -17.50886 -17.08929 -16.84113 -16.67699 -16.17809 -15.98299 -15.78115 -15.47932 -15.41063 -14.78479 -14.49628 -14.25575 -14.02569 -13.75361 -13.49169 -13.27550 -13.12219 -12.99320 -12.89155 -12.78598 -12.68061 -12.51463 -12.38231 -12.12955 -12.06342 -11.90582 -11.70202 -11.61286 -10.82197 -10.78902 -9.88267 -9.19296 -8.98768 -7.97672 -5.35371 -0.40883 0.39100 1.38610 1.42144 1.44207 1.54330 2.06315 2.44345 2.74360 3.03502 3.22690 3.50720 3.56953 3.73882 3.82165 3.90547 3.93005 4.04906 4.17471 4.25260 4.43364 4.50242 4.55573 4.61005 4.66458 4.74990 4.77470 4.85095 4.86860 4.88250 4.91092 5.07084 5.27126 5.31201 5.32527 5.36064 5.45084 5.47037 5.57599 5.79539 6.08979 6.33790 6.52128 6.97388 7.61852 8.28541 9.14823 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.004244 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.038676 B = 6595.845789 C = 7593.368595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.386 3.614 3 O -0.514 6.514 4 C -0.163 4.163 5 C -0.088 4.088 6 C -0.091 4.091 7 C -0.091 4.091 8 C -0.109 4.109 9 C 0.091 3.909 10 O -0.304 6.304 11 C 0.090 3.910 12 H 0.076 0.924 13 C -0.117 4.117 14 C 0.179 3.821 15 N -0.620 5.620 16 C -0.257 4.257 17 H 0.074 0.926 18 C -0.056 4.056 19 N -0.945 5.945 20 Si 0.983 3.017 21 H -0.285 1.285 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.120 3.880 25 C -0.174 4.174 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.007 0.993 38 H 0.253 0.747 39 H 0.029 0.971 40 H 0.012 0.988 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.633 -14.977 4.988 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.268 3.732 3 O -0.393 6.393 4 C -0.164 4.164 5 C -0.106 4.106 6 C -0.109 4.109 7 C -0.091 4.091 8 C -0.165 4.165 9 C 0.047 3.953 10 O -0.217 6.217 11 C 0.033 3.967 12 H 0.094 0.906 13 C -0.155 4.155 14 C 0.054 3.946 15 N -0.348 5.348 16 C -0.386 4.386 17 H 0.092 0.908 18 C -0.250 4.250 19 N -0.592 5.592 20 Si 0.810 3.190 21 H -0.212 1.212 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.006 4.006 25 C -0.193 4.193 26 H 0.139 0.861 27 H 0.105 0.895 28 H 0.139 0.861 29 H 0.198 0.802 30 H 0.197 0.803 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.028 -14.478 4.932 25.201 hybrid contribution 1.059 1.470 -0.735 1.956 sum -18.969 -13.008 4.197 23.380 Atomic orbital electron populations 1.22269 0.89074 1.06554 1.06595 1.23436 0.94143 0.86671 0.68943 1.90575 1.73742 1.36156 1.38869 1.20570 0.92708 0.96750 1.06389 1.21801 1.02059 0.89557 0.97162 1.21368 0.91314 1.00155 0.98052 1.19991 0.94815 0.93232 1.01097 1.20744 1.00059 0.92554 1.03129 1.19154 0.82767 0.94295 0.99130 1.86096 1.16333 1.31325 1.87953 1.23218 0.94181 0.83361 0.95946 0.90569 1.22973 0.91242 0.99423 1.01852 1.21235 0.96041 0.91899 0.85388 1.44641 1.13119 1.62611 1.14380 1.19372 1.08274 1.21950 0.88992 0.90803 1.25732 0.99881 0.99448 0.99911 1.70121 1.23860 1.43357 1.21889 0.85018 0.77439 0.78035 0.78521 1.21178 1.21095 1.19362 1.21777 0.87950 0.94797 0.96085 1.21597 0.95928 0.97194 1.04564 0.86090 0.89462 0.86102 0.80216 0.80333 0.90598 0.88273 0.92316 0.88088 0.90031 0.93459 0.97518 0.93798 0.95305 0.97046 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 9.75 71.24 0.69 -1.63 16 2 C 0.39 9.83 7.23 28.04 0.20 10.03 16 3 O -0.51 -18.97 17.09 -2.94 -0.05 -19.02 16 4 C -0.16 -4.12 5.87 -20.16 -0.12 -4.24 16 5 C -0.09 -1.35 9.36 22.59 0.21 -1.14 16 6 C -0.09 -1.37 9.67 22.21 0.21 -1.16 16 7 C -0.09 -2.03 5.90 -19.69 -0.12 -2.15 16 8 C -0.11 -1.94 9.78 71.24 0.70 -1.25 16 9 C 0.09 2.84 6.58 22.46 0.15 2.99 16 10 O -0.30 -10.73 8.90 -92.57 -0.82 -11.56 16 11 C 0.09 3.58 2.78 31.78 0.09 3.67 16 12 H 0.08 3.03 6.64 -2.39 -0.02 3.01 16 13 C -0.12 -4.60 6.81 31.99 0.22 -4.39 16 14 C 0.18 9.25 5.39 86.86 0.47 9.72 16 15 N -0.62 -34.77 3.39 -692.01 -2.35 -37.12 16 16 C -0.26 -15.47 10.23 84.03 0.86 -14.61 16 17 H 0.07 4.33 7.84 -2.91 -0.02 4.30 16 18 C -0.06 -3.29 5.40 84.86 0.46 -2.83 16 19 N -0.95 -58.17 10.75 21.65 0.23 -57.94 16 20 Si 0.98 47.16 29.56 68.60 2.03 49.19 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.12 5.75 6.46 86.73 0.56 6.31 16 25 C -0.17 -5.74 8.29 22.68 0.19 -5.56 16 26 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.12 0.65 6.47 -2.39 -0.02 0.63 16 29 H 0.18 0.99 6.35 -2.91 -0.02 0.97 16 30 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.06 1.26 7.51 -2.39 -0.02 1.24 16 34 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.05 2.66 7.06 -2.39 -0.02 2.64 16 37 H 0.01 0.38 8.03 -2.39 -0.02 0.36 16 38 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 39 H 0.03 1.40 8.06 -2.39 -0.02 1.38 16 40 H 0.01 0.59 7.35 -2.39 -0.02 0.57 16 41 H 0.11 4.24 4.83 -2.91 -0.01 4.23 16 Total: -1.00 -79.16 335.82 4.84 -74.32 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.03 Total: 8.34 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.77 Total: -6.22 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -2.12 Total: -95.06 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.87 Total: -30.58 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -79.16 4.84 -74.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228350854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.607 kcal (2) G-P(sol) polarization free energy of solvation -79.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds