Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21300 * 119.99809 * 2 1 4 4 C 1.46778 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.40023 * 120.22069 * 273.43877 * 4 2 1 6 6 C 1.50697 * 120.05984 * 359.97438 * 5 4 2 7 7 C 1.37674 * 119.88002 * 179.97438 * 5 4 2 8 8 C 1.38630 * 120.34189 * 359.97438 * 7 5 4 9 9 C 1.38056 * 120.45010 * 359.72781 * 8 7 5 10 10 C 1.38696 * 120.11183 * 0.55844 * 9 8 7 11 11 O 1.35591 * 120.16822 * 179.72396 * 10 9 8 12 12 C 1.42897 * 117.00457 * 354.53821 * 11 10 9 13 13 H 1.09005 * 110.64509 * 321.77754 * 12 11 10 14 14 C 1.55154 * 110.72484 * 198.43904 * 12 11 10 15 15 C 1.55128 * 101.48610 * 205.97258 * 14 12 11 16 16 N 1.47422 * 104.72580 * 37.29297 * 15 14 12 17 17 C 1.36936 * 125.64937 * 155.81815 * 16 15 14 18 18 H 1.08005 * 119.99854 * 209.83690 * 17 16 15 19 19 C 1.38806 * 120.00197 * 29.83667 * 17 16 15 20 20 N 1.31616 * 120.00354 * 200.99587 * 19 17 16 21 21 Si 1.86803 * 120.00008 * 20.99341 * 19 17 16 22 22 H 1.48501 * 109.47405 * 274.46421 * 21 19 17 23 23 H 1.48505 * 109.46901 * 34.46192 * 21 19 17 24 24 H 1.48495 * 109.47220 * 154.45960 * 21 19 17 25 25 C 1.47028 * 108.70151 * 335.55576 * 16 15 14 26 26 H 1.09000 * 109.46807 * 184.99707 * 1 2 3 27 27 H 1.08994 * 109.47133 * 304.99827 * 1 2 3 28 28 H 1.09004 * 109.46811 * 65.00002 * 1 2 3 29 29 H 1.08991 * 109.47204 * 91.58837 * 6 5 4 30 30 H 1.09009 * 109.47067 * 211.58172 * 6 5 4 31 31 H 1.08999 * 109.47189 * 331.58155 * 6 5 4 32 32 H 1.08003 * 119.83250 * 179.97438 * 7 5 4 33 33 H 1.07993 * 119.77728 * 180.02562 * 8 7 5 34 34 H 1.08003 * 119.94322 * 180.29175 * 9 8 7 35 35 H 1.09001 * 110.99999 * 324.21078 * 14 12 11 36 36 H 1.08992 * 111.00767 * 88.02180 * 14 12 11 37 37 H 1.09007 * 110.49809 * 278.44904 * 15 14 12 38 38 H 1.09005 * 110.34256 * 156.05885 * 15 14 12 39 39 H 0.97001 * 120.00555 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.88205 * 120.70017 * 25 16 15 41 41 H 1.08997 * 109.88161 * 241.71259 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2711 0.0006 5 6 2.5305 -1.9172 1.2086 6 6 2.0895 -1.3086 2.5148 7 6 3.2189 -3.1095 1.2009 8 6 3.6269 -3.6748 0.0027 9 6 3.3435 -3.0528 -1.1968 10 6 2.6563 -1.8481 -1.2106 11 8 2.3823 -1.2335 -2.3877 12 6 2.9336 -1.8186 -3.5690 13 1 3.9385 -2.1954 -3.3783 14 6 2.9387 -0.7971 -4.7368 15 6 2.8949 -1.7374 -5.9699 16 7 2.0106 -2.8453 -5.5651 17 6 1.3023 -3.6523 -6.4149 18 1 0.3653 -4.0835 -6.0946 19 6 1.7886 -3.9163 -7.6879 20 7 0.9691 -4.3226 -8.6343 21 14 3.6061 -3.6949 -8.0580 22 1 3.8690 -2.2784 -8.4183 23 1 4.4032 -4.0565 -6.8583 24 1 3.9912 -4.5736 -9.1914 25 6 2.0200 -2.9442 -4.0982 26 1 -0.3633 -1.0238 0.0895 27 1 -0.3633 0.5894 0.8418 28 1 -0.3633 0.4343 -0.9314 29 1 1.1066 -1.6961 2.7826 30 1 2.8060 -1.5648 3.2953 31 1 2.0370 -0.2248 2.4112 32 1 3.4422 -3.6069 2.1332 33 1 4.1660 -4.6106 0.0073 34 1 3.6612 -3.5029 -2.1257 35 1 2.0580 -0.1559 -4.6987 36 1 3.8524 -0.2029 -4.7322 37 1 3.8923 -2.1126 -6.1994 38 1 2.4781 -1.2143 -6.8306 39 1 1.3089 -4.5075 -9.5239 40 1 1.0093 -2.8139 -3.7114 41 1 2.4105 -3.9154 -3.7947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228992723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -23.087695 kcal Electronic energy + Delta-G solvation = -23103.671808 eV Core-core repulsion = 19756.826168 eV Total energy + Delta-G solvation = -3346.845640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -40.70574 -39.13456 -37.94839 -36.51694 -32.87326 -32.52507 -31.18298 -29.91000 -29.22502 -28.19703 -27.10860 -24.49805 -23.58551 -22.05012 -21.08115 -20.22412 -19.65018 -17.84562 -17.16619 -16.57966 -16.29254 -15.71217 -15.31165 -15.08620 -14.71338 -14.48634 -14.12363 -14.00040 -13.76582 -13.48246 -13.25069 -12.73837 -12.50431 -12.42343 -12.33937 -12.17795 -12.07370 -11.86239 -11.72897 -11.51621 -11.36739 -11.03911 -10.71186 -10.40966 -10.29716 -10.17367 -9.76033 -9.63085 -8.90942 -8.67930 -8.22275 -7.02733 -6.05365 -3.44276 1.01732 1.30861 1.83967 3.13424 3.29160 3.41634 3.44825 3.51377 3.99419 4.46951 4.58440 4.70346 4.79236 4.91371 4.96768 5.03601 5.09972 5.11907 5.18256 5.27741 5.30333 5.33855 5.35859 5.40605 5.53061 5.55605 5.75383 5.79047 5.86611 5.92208 6.12829 6.16649 6.25549 6.31854 6.37562 6.43950 6.51804 6.62945 6.68219 7.37713 7.45144 7.72158 8.24372 8.75036 9.58412 10.09654 11.10544 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.004140 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.549306 B = 6761.722945 C = 7162.659534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.422 3.578 3 O -0.453 6.453 4 C -0.198 4.198 5 C -0.021 4.021 6 C -0.121 4.121 7 C -0.165 4.165 8 C -0.060 4.060 9 C -0.212 4.212 10 C 0.175 3.825 11 O -0.301 6.301 12 C 0.068 3.932 13 H 0.082 0.918 14 C -0.122 4.122 15 C 0.118 3.882 16 N -0.603 5.603 17 C -0.249 4.249 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.902 5.902 21 Si 0.881 3.119 22 H -0.282 1.282 23 H -0.275 1.275 24 H -0.299 1.299 25 C 0.114 3.886 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.265 0.735 40 H 0.045 0.955 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 4.731 20.725 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.297 3.703 3 O -0.326 6.326 4 C -0.199 4.199 5 C -0.021 4.021 6 C -0.177 4.177 7 C -0.184 4.184 8 C -0.078 4.078 9 C -0.230 4.230 10 C 0.128 3.872 11 O -0.213 6.213 12 C 0.012 3.988 13 H 0.099 0.901 14 C -0.160 4.160 15 C -0.007 4.007 16 N -0.331 5.331 17 C -0.376 4.376 18 H 0.105 0.895 19 C -0.167 4.167 20 N -0.544 5.544 21 Si 0.710 3.290 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.226 1.226 25 C -0.012 4.012 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.454 5.354 20.441 21.411 hybrid contribution 1.191 -0.423 -0.520 1.366 sum 4.644 4.931 19.921 21.041 Atomic orbital electron populations 1.22241 0.93467 1.04842 1.04863 1.22229 0.91667 0.87249 0.69118 1.90554 1.72393 1.34314 1.35302 1.19573 1.08967 0.99848 0.91550 1.19608 0.95669 0.93949 0.92921 1.20882 1.02180 1.00820 0.93829 1.20786 1.02798 0.96456 0.98315 1.21076 0.96372 0.98762 0.91602 1.21391 1.05096 0.96438 1.00093 1.18924 0.92470 0.90742 0.85106 1.86059 1.70367 1.52017 1.12845 1.23693 0.96906 0.95901 0.82282 0.90063 1.22902 1.02810 0.97181 0.93131 1.21993 0.94432 0.88679 0.95596 1.44598 1.54370 1.33890 1.00243 1.18563 1.00804 1.24488 0.93781 0.89474 1.25288 0.97553 0.97838 0.96042 1.69823 1.34115 1.48326 1.02126 0.86889 0.87675 0.77357 0.77075 1.20901 1.20095 1.22611 1.21902 0.97524 0.94870 0.86869 0.89865 0.89083 0.88306 0.90279 0.90653 0.91602 0.85557 0.85428 0.84407 0.89716 0.90731 0.95653 0.91594 0.92467 0.93723 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 10.32 36.01 0.37 -1.60 16 2 C 0.42 5.74 4.66 -30.86 -0.14 5.59 16 3 O -0.45 -7.53 17.86 5.54 0.10 -7.43 16 4 C -0.20 -2.70 5.47 -104.95 -0.57 -3.27 16 5 C -0.02 -0.24 5.92 -104.16 -0.62 -0.85 16 6 C -0.12 -0.98 9.65 36.00 0.35 -0.63 16 7 C -0.17 -1.69 9.68 -39.64 -0.38 -2.07 16 8 C -0.06 -0.66 10.03 -39.50 -0.40 -1.06 16 9 C -0.21 -2.85 8.76 -39.48 -0.35 -3.19 16 10 C 0.17 2.62 6.64 -38.58 -0.26 2.36 16 11 O -0.30 -5.02 9.33 -18.47 -0.17 -5.19 16 12 C 0.07 1.16 2.77 -24.90 -0.07 1.09 16 13 H 0.08 1.27 6.59 -51.93 -0.34 0.93 16 14 C -0.12 -2.10 6.82 -24.47 -0.17 -2.27 16 15 C 0.12 2.51 4.87 -2.41 -0.01 2.50 16 16 N -0.60 -14.50 3.03 -169.93 -0.52 -15.01 16 17 C -0.25 -7.01 10.51 -15.06 -0.16 -7.17 16 18 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 19 C 0.03 0.95 5.43 -17.43 -0.09 0.86 16 20 N -0.90 -27.39 13.97 55.49 0.78 -26.61 16 21 Si 0.88 22.08 24.55 -169.99 -4.17 17.91 16 22 H -0.28 -6.80 6.98 56.52 0.39 -6.41 16 23 H -0.28 -6.79 6.98 56.52 0.39 -6.40 16 24 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 25 C 0.11 2.28 6.50 -3.06 -0.02 2.26 16 26 H 0.08 0.74 7.99 -51.93 -0.41 0.32 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.10 -51.92 -0.42 0.07 16 31 H 0.07 0.59 7.04 -51.93 -0.37 0.22 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.86 5.31 -52.48 -0.28 1.58 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.55 5.50 -51.92 -0.29 0.27 16 38 H 0.07 1.46 7.85 -51.93 -0.41 1.06 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.04 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.04 0.72 7.42 -51.93 -0.39 0.33 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -32.78 334.87 -7.31 -40.09 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.85 Total: -1.34 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.52 Total: -7.46 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.26 Total: -41.62 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.07 Total: -12.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.17 Total: 17.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.78 -7.31 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228992723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.005 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds