Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21300 * 119.99809 * 2 1 4 4 C 1.46778 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.40023 * 120.22069 * 273.43877 * 4 2 1 6 6 C 1.50697 * 120.05984 * 359.97438 * 5 4 2 7 7 C 1.37674 * 119.88002 * 179.97438 * 5 4 2 8 8 C 1.38630 * 120.34189 * 359.97438 * 7 5 4 9 9 C 1.38056 * 120.45010 * 359.72781 * 8 7 5 10 10 C 1.38696 * 120.11183 * 0.55844 * 9 8 7 11 11 O 1.35591 * 120.16822 * 179.72396 * 10 9 8 12 12 C 1.42897 * 117.00457 * 354.53821 * 11 10 9 13 13 H 1.09005 * 110.64509 * 321.77754 * 12 11 10 14 14 C 1.55154 * 110.72484 * 198.43904 * 12 11 10 15 15 C 1.55128 * 101.48610 * 205.97258 * 14 12 11 16 16 N 1.47422 * 104.72580 * 37.29297 * 15 14 12 17 17 C 1.36936 * 125.64937 * 155.81815 * 16 15 14 18 18 H 1.08005 * 119.99854 * 209.83690 * 17 16 15 19 19 C 1.38806 * 120.00197 * 29.83667 * 17 16 15 20 20 N 1.31616 * 120.00354 * 200.99587 * 19 17 16 21 21 Si 1.86803 * 120.00008 * 20.99341 * 19 17 16 22 22 H 1.48501 * 109.47405 * 274.46421 * 21 19 17 23 23 H 1.48505 * 109.46901 * 34.46192 * 21 19 17 24 24 H 1.48495 * 109.47220 * 154.45960 * 21 19 17 25 25 C 1.47028 * 108.70151 * 335.55576 * 16 15 14 26 26 H 1.09000 * 109.46807 * 184.99707 * 1 2 3 27 27 H 1.08994 * 109.47133 * 304.99827 * 1 2 3 28 28 H 1.09004 * 109.46811 * 65.00002 * 1 2 3 29 29 H 1.08991 * 109.47204 * 91.58837 * 6 5 4 30 30 H 1.09009 * 109.47067 * 211.58172 * 6 5 4 31 31 H 1.08999 * 109.47189 * 331.58155 * 6 5 4 32 32 H 1.08003 * 119.83250 * 179.97438 * 7 5 4 33 33 H 1.07993 * 119.77728 * 180.02562 * 8 7 5 34 34 H 1.08003 * 119.94322 * 180.29175 * 9 8 7 35 35 H 1.09001 * 110.99999 * 324.21078 * 14 12 11 36 36 H 1.08992 * 111.00767 * 88.02180 * 14 12 11 37 37 H 1.09007 * 110.49809 * 278.44904 * 15 14 12 38 38 H 1.09005 * 110.34256 * 156.05885 * 15 14 12 39 39 H 0.97001 * 120.00555 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.88205 * 120.70017 * 25 16 15 41 41 H 1.08997 * 109.88161 * 241.71259 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2711 0.0006 5 6 2.5305 -1.9172 1.2086 6 6 2.0895 -1.3086 2.5148 7 6 3.2189 -3.1095 1.2009 8 6 3.6269 -3.6748 0.0027 9 6 3.3435 -3.0528 -1.1968 10 6 2.6563 -1.8481 -1.2106 11 8 2.3823 -1.2335 -2.3877 12 6 2.9336 -1.8186 -3.5690 13 1 3.9385 -2.1954 -3.3783 14 6 2.9387 -0.7971 -4.7368 15 6 2.8949 -1.7374 -5.9699 16 7 2.0106 -2.8453 -5.5651 17 6 1.3023 -3.6523 -6.4149 18 1 0.3653 -4.0835 -6.0946 19 6 1.7886 -3.9163 -7.6879 20 7 0.9691 -4.3226 -8.6343 21 14 3.6061 -3.6949 -8.0580 22 1 3.8690 -2.2784 -8.4183 23 1 4.4032 -4.0565 -6.8583 24 1 3.9912 -4.5736 -9.1914 25 6 2.0200 -2.9442 -4.0982 26 1 -0.3633 -1.0238 0.0895 27 1 -0.3633 0.5894 0.8418 28 1 -0.3633 0.4343 -0.9314 29 1 1.1066 -1.6961 2.7826 30 1 2.8060 -1.5648 3.2953 31 1 2.0370 -0.2248 2.4112 32 1 3.4422 -3.6069 2.1332 33 1 4.1660 -4.6106 0.0073 34 1 3.6612 -3.5029 -2.1257 35 1 2.0580 -0.1559 -4.6987 36 1 3.8524 -0.2029 -4.7322 37 1 3.8923 -2.1126 -6.1994 38 1 2.4781 -1.2143 -6.8306 39 1 1.3089 -4.5075 -9.5239 40 1 1.0093 -2.8139 -3.7114 41 1 2.4105 -3.9154 -3.7947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228992723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -43.402068 kcal Electronic energy + Delta-G solvation = -23104.552705 eV Core-core repulsion = 19756.826168 eV Total energy + Delta-G solvation = -3347.726537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.77403 -40.34884 -39.10373 -37.93722 -34.54342 -33.73602 -32.33188 -31.44623 -30.28981 -29.65281 -27.96223 -26.35117 -24.53226 -23.24826 -22.72837 -21.53995 -20.71489 -19.06917 -18.97410 -17.63778 -17.39415 -17.33585 -16.73882 -16.28339 -15.94714 -15.51982 -15.49822 -15.31296 -14.84637 -14.79652 -14.34905 -14.19063 -13.96374 -13.85064 -13.32819 -13.20870 -13.10054 -13.07194 -12.90154 -12.78322 -12.63510 -12.50540 -12.28949 -12.15249 -11.80526 -11.69934 -11.57823 -10.80560 -10.78540 -9.80466 -9.23620 -9.01451 -8.26171 -5.63052 0.10763 0.37068 0.81545 1.29948 1.37250 1.47509 1.95061 2.37469 2.60766 2.96538 3.06823 3.25117 3.49192 3.66346 3.75931 3.87232 3.92787 4.07315 4.15117 4.25705 4.26567 4.36229 4.40123 4.56202 4.57771 4.72338 4.73558 4.77485 4.77864 4.81055 4.86180 4.89166 5.04470 5.07584 5.16368 5.24551 5.40734 5.49615 5.68696 5.77734 6.05146 6.29692 6.38248 6.68047 7.43143 8.02632 8.93817 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.004140 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.549306 B = 6761.722945 C = 7162.659534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.422 3.578 3 O -0.493 6.493 4 C -0.217 4.217 5 C -0.023 4.023 6 C -0.120 4.120 7 C -0.157 4.157 8 C -0.059 4.059 9 C -0.226 4.226 10 C 0.143 3.857 11 O -0.314 6.314 12 C 0.083 3.917 13 H 0.100 0.900 14 C -0.112 4.112 15 C 0.111 3.889 16 N -0.621 5.621 17 C -0.249 4.249 18 H 0.049 0.951 19 C -0.021 4.021 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.265 1.265 23 H -0.265 1.265 24 H -0.301 1.301 25 C 0.115 3.885 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.033 0.967 38 H 0.051 0.949 39 H 0.267 0.733 40 H 0.032 0.968 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 4.912 23.417 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.300 3.700 3 O -0.369 6.369 4 C -0.219 4.219 5 C -0.023 4.023 6 C -0.176 4.176 7 C -0.175 4.175 8 C -0.077 4.077 9 C -0.244 4.244 10 C 0.097 3.903 11 O -0.227 6.227 12 C 0.027 3.973 13 H 0.118 0.882 14 C -0.150 4.150 15 C -0.013 4.013 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.067 0.933 19 C -0.217 4.217 20 N -0.594 5.594 21 Si 0.772 3.228 22 H -0.190 1.190 23 H -0.190 1.190 24 H -0.229 1.229 25 C -0.010 4.010 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.297 5.546 23.176 24.411 hybrid contribution 0.517 -0.522 -1.181 1.391 sum 5.814 5.024 21.994 23.298 Atomic orbital electron populations 1.22277 0.90993 1.06111 1.05700 1.22742 0.93120 0.86723 0.67375 1.90534 1.73380 1.35482 1.37479 1.19844 1.09681 1.00223 0.92127 1.20046 0.94948 0.94151 0.93183 1.20971 1.03884 0.99995 0.92749 1.21229 1.01021 0.95794 0.99420 1.21447 0.95792 0.99453 0.91019 1.21469 1.05640 0.96286 1.01034 1.19203 0.94426 0.91943 0.84731 1.86016 1.71092 1.52367 1.13251 1.23442 0.96779 0.94442 0.82655 0.88215 1.22833 1.04445 0.96586 0.91121 1.22091 0.93673 0.88477 0.97048 1.44657 1.54402 1.34326 1.01580 1.18432 1.00101 1.24565 0.94632 0.93289 1.25914 1.01747 0.98299 0.95771 1.69949 1.36093 1.50665 1.02665 0.85860 0.81928 0.78094 0.76936 1.19028 1.18991 1.22926 1.21938 0.97838 0.96683 0.84562 0.88692 0.86631 0.88578 0.88213 0.88496 0.92700 0.82077 0.82774 0.84921 0.89999 0.87347 0.94990 0.93020 0.92438 0.95003 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.64 10.32 71.24 0.73 -2.91 16 2 C 0.42 11.18 4.66 27.92 0.13 11.31 16 3 O -0.49 -16.36 17.86 -3.09 -0.06 -16.41 16 4 C -0.22 -5.66 5.47 -20.08 -0.11 -5.77 16 5 C -0.02 -0.45 5.92 -19.57 -0.12 -0.57 16 6 C -0.12 -1.56 9.65 71.24 0.69 -0.87 16 7 C -0.16 -2.62 9.68 22.23 0.22 -2.40 16 8 C -0.06 -1.14 10.03 22.32 0.22 -0.91 16 9 C -0.23 -5.73 8.76 22.34 0.20 -5.53 16 10 C 0.14 4.16 6.64 22.92 0.15 4.32 16 11 O -0.31 -10.33 9.33 -89.00 -0.83 -11.16 16 12 C 0.08 2.74 2.77 31.78 0.09 2.82 16 13 H 0.10 2.92 6.59 -2.38 -0.02 2.90 16 14 C -0.11 -3.67 6.82 32.06 0.22 -3.45 16 15 C 0.11 4.62 4.87 86.93 0.42 5.04 16 16 N -0.62 -30.11 3.03 -691.53 -2.10 -32.21 16 17 C -0.25 -14.47 10.51 84.03 0.88 -13.58 16 18 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 19 C -0.02 -1.22 5.43 84.86 0.46 -0.76 16 20 N -0.95 -59.44 13.97 21.65 0.30 -59.13 16 21 Si 0.94 45.66 24.55 68.60 1.68 47.35 16 22 H -0.26 -11.95 6.98 99.48 0.69 -11.26 16 23 H -0.26 -12.25 6.98 99.48 0.69 -11.56 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 25 C 0.11 4.60 6.50 86.73 0.56 5.17 16 26 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 27 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.86 8.10 -2.38 -0.02 0.84 16 31 H 0.05 0.86 7.04 -2.39 -0.02 0.84 16 32 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.13 3.41 5.31 -2.91 -0.02 3.39 16 35 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.03 1.31 5.50 -2.38 -0.01 1.30 16 38 H 0.05 2.26 7.85 -2.38 -0.02 2.25 16 39 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.03 1.34 8.06 -2.39 -0.02 1.33 16 41 H 0.04 1.61 7.42 -2.39 -0.02 1.59 16 Total: -1.00 -73.68 334.87 4.76 -68.92 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.00 Total: 10.75 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 4.75 Total: -8.10 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -1.80 Total: -91.35 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.89 Total: -27.58 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.68 Total: 47.35 kcal Total: -73.68 4.76 -68.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228992723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.522 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds