Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21300 * 119.99458 * 2 1 4 4 C 1.46778 * 120.00212 * 180.02562 * 2 1 3 5 5 C 1.40017 * 120.22614 * 270.68409 * 4 2 1 6 6 C 1.50710 * 120.05499 * 359.97438 * 5 4 2 7 7 C 1.37675 * 119.88390 * 179.70025 * 5 4 2 8 8 C 1.38622 * 120.33832 * 0.53550 * 7 5 4 9 9 C 1.38052 * 120.45389 * 359.48048 * 8 7 5 10 10 C 1.38692 * 120.11326 * 0.23496 * 9 8 7 11 11 O 1.35591 * 120.17193 * 180.02562 * 10 9 8 12 12 C 1.42900 * 117.00273 * 5.55929 * 11 10 9 13 13 H 1.09004 * 110.88654 * 32.07345 * 12 11 10 14 14 C 1.55154 * 111.00805 * 155.95595 * 12 11 10 15 15 C 1.54319 * 102.94488 * 153.57931 * 14 12 11 16 16 N 1.47022 * 107.27217 * 337.80736 * 15 14 12 17 17 C 1.36933 * 125.65369 * 178.90502 * 16 15 14 18 18 H 1.07996 * 120.00439 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99584 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00140 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47070 * 60.00184 * 21 19 17 23 23 H 1.48502 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47241 * 300.00095 * 21 19 17 25 25 C 1.47470 * 108.71912 * 358.97219 * 16 15 14 26 26 H 1.09007 * 109.46920 * 174.98571 * 1 2 3 27 27 H 1.08999 * 109.47235 * 294.97982 * 1 2 3 28 28 H 1.08997 * 109.47194 * 54.98746 * 1 2 3 29 29 H 1.09002 * 109.46664 * 84.59044 * 6 5 4 30 30 H 1.08997 * 109.47273 * 204.58516 * 6 5 4 31 31 H 1.08995 * 109.47061 * 324.59379 * 6 5 4 32 32 H 1.08003 * 119.82832 * 180.27075 * 7 5 4 33 33 H 1.07997 * 119.77386 * 179.76557 * 8 7 5 34 34 H 1.08003 * 119.94595 * 180.26279 * 9 8 7 35 35 H 1.09004 * 110.71830 * 271.93818 * 14 12 11 36 36 H 1.09000 * 110.72004 * 35.21320 * 14 12 11 37 37 H 1.09002 * 109.88613 * 97.22037 * 15 14 12 38 38 H 1.08998 * 109.88298 * 218.23559 * 15 14 12 39 39 H 0.97001 * 119.99651 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.35392 * 265.25156 * 25 16 15 41 41 H 1.09006 * 110.40640 * 142.91928 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 2.5809 -1.8893 1.2089 6 6 2.1943 -1.2504 2.5179 7 6 3.2640 -3.0846 1.2001 8 6 3.6272 -3.6747 -0.0006 9 6 3.2995 -3.0772 -1.2012 10 6 2.6065 -1.8759 -1.2143 11 8 2.2836 -1.2882 -2.3929 12 6 2.5792 -2.0191 -3.5847 13 1 2.4921 -3.0922 -3.4143 14 6 1.6675 -1.5661 -4.7555 15 6 2.5180 -1.8908 -6.0016 16 7 3.9217 -1.9505 -5.5685 17 6 4.9935 -2.2348 -6.3720 18 1 5.9899 -2.2547 -5.9562 19 6 4.7991 -2.4973 -7.7212 20 7 3.5847 -2.4725 -8.2282 21 14 6.2612 -2.8844 -8.8175 22 1 6.9515 -4.0980 -8.3117 23 1 5.7896 -3.1247 -10.2050 24 1 7.2047 -1.7379 -8.8074 25 6 3.9847 -1.6551 -4.1251 26 1 -0.3633 -1.0238 -0.0898 27 1 -0.3633 0.4340 0.9315 28 1 -0.3633 0.5896 -0.8417 29 1 1.1733 -1.5344 2.7733 30 1 2.8722 -1.5886 3.3016 31 1 2.2575 -0.1662 2.4257 32 1 3.5219 -3.5629 2.1335 33 1 4.1662 -4.6105 0.0032 34 1 3.5829 -3.5462 -2.1319 35 1 0.7384 -2.1361 -4.7636 36 1 1.4647 -0.4969 -4.6950 37 1 2.2167 -2.8531 -6.4157 38 1 2.3916 -1.1091 -6.7506 39 1 3.4489 -2.6556 -9.1710 40 1 4.1911 -0.5972 -3.9633 41 1 4.7465 -2.2689 -3.6444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228992725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = -23.278839 kcal Electronic energy + Delta-G solvation = -22989.593509 eV Core-core repulsion = 19642.739580 eV Total energy + Delta-G solvation = -3346.853928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.59894 -38.99468 -37.81519 -36.26640 -32.79828 -32.42699 -31.06731 -29.57899 -29.05889 -27.64227 -26.93016 -24.61174 -23.54019 -22.00388 -20.45420 -20.21179 -19.49546 -17.80253 -17.09415 -16.50485 -16.17424 -15.43411 -15.04724 -14.71833 -14.62227 -14.46475 -14.13571 -13.82628 -13.64379 -13.55300 -13.00837 -12.52493 -12.41268 -12.32342 -12.18489 -12.14221 -11.87085 -11.79234 -11.52054 -11.19262 -10.99957 -10.81205 -10.38555 -10.28246 -10.12437 -9.94188 -9.75204 -9.68350 -8.84943 -8.66247 -8.13674 -6.92812 -5.77481 -3.12299 1.08060 1.37797 1.88987 3.25898 3.38384 3.42840 3.44209 3.57442 4.03283 4.45545 4.64313 4.79498 4.96992 5.03916 5.13818 5.14393 5.19055 5.29595 5.33644 5.35757 5.42113 5.49485 5.52927 5.57979 5.59264 5.69412 5.79523 5.93873 6.12209 6.20416 6.28177 6.33970 6.36795 6.42788 6.52737 6.58610 6.77138 7.43615 7.46969 7.50168 7.56571 7.74865 8.17203 9.14414 9.73895 10.38145 11.34258 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.003830 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.963682 B = 7309.303966 C = 7898.074359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.421 3.579 3 O -0.450 6.450 4 C -0.200 4.200 5 C -0.021 4.021 6 C -0.121 4.121 7 C -0.167 4.167 8 C -0.060 4.060 9 C -0.212 4.212 10 C 0.177 3.823 11 O -0.302 6.302 12 C 0.064 3.936 13 H 0.084 0.916 14 C -0.136 4.136 15 C 0.179 3.821 16 N -0.602 5.602 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.120 3.880 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.254 0.746 40 H 0.031 0.969 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 -1.495 19.444 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.296 3.704 3 O -0.323 6.323 4 C -0.202 4.202 5 C -0.022 4.022 6 C -0.178 4.178 7 C -0.185 4.185 8 C -0.078 4.078 9 C -0.231 4.231 10 C 0.130 3.870 11 O -0.214 6.214 12 C 0.007 3.993 13 H 0.102 0.898 14 C -0.174 4.174 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.360 4.360 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.007 4.007 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.705 -0.784 19.142 20.298 hybrid contribution 0.876 -0.573 -0.805 1.321 sum -5.829 -1.357 18.337 19.289 Atomic orbital electron populations 1.22220 0.93628 1.04837 1.04561 1.22215 0.91592 0.87320 0.69293 1.90566 1.72365 1.34308 1.35046 1.19559 1.09115 0.99979 0.91544 1.19593 0.95619 0.94061 0.92891 1.20884 1.02238 1.00838 0.93801 1.20781 1.03152 0.96379 0.98231 1.21071 0.96272 0.98859 0.91612 1.21386 1.04642 0.96980 1.00094 1.18949 0.91970 0.90882 0.85242 1.86040 1.77468 1.45562 1.12352 1.23974 0.98522 0.95387 0.81400 0.89778 1.23055 0.98166 1.01577 0.94640 1.21201 0.81851 1.01081 0.90445 1.44333 1.03589 1.82868 1.02186 1.19019 0.86309 1.40997 0.89697 0.90326 1.24815 0.96926 1.01698 0.96765 1.69930 1.18944 1.55212 1.12865 0.86156 0.81387 0.78251 0.79710 1.21078 1.21500 1.21067 1.21924 0.93177 0.98506 0.87053 0.89981 0.88949 0.88674 0.90490 0.90722 0.91397 0.85643 0.85487 0.84265 0.91265 0.91098 0.93002 0.93166 0.93547 0.95123 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 10.32 36.01 0.37 -1.55 16 2 C 0.42 5.90 4.79 -30.86 -0.15 5.76 16 3 O -0.45 -7.86 17.86 5.54 0.10 -7.76 16 4 C -0.20 -2.84 5.47 -104.95 -0.57 -3.41 16 5 C -0.02 -0.25 5.92 -104.16 -0.62 -0.86 16 6 C -0.12 -1.04 9.53 36.01 0.34 -0.69 16 7 C -0.17 -1.78 9.65 -39.65 -0.38 -2.17 16 8 C -0.06 -0.70 10.03 -39.51 -0.40 -1.09 16 9 C -0.21 -3.00 8.94 -39.48 -0.35 -3.35 16 10 C 0.18 2.77 6.70 -38.58 -0.26 2.51 16 11 O -0.30 -5.31 9.40 -18.47 -0.17 -5.49 16 12 C 0.06 1.17 2.81 -24.58 -0.07 1.10 16 13 H 0.08 1.44 6.22 -51.93 -0.32 1.12 16 14 C -0.14 -2.57 6.69 -24.90 -0.17 -2.74 16 15 C 0.18 4.30 5.37 -3.07 -0.02 4.28 16 16 N -0.60 -15.47 3.40 -170.04 -0.58 -16.05 16 17 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 20 N -0.92 -26.75 10.31 55.49 0.57 -26.18 16 21 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.59 6.87 -2.50 -0.02 2.58 16 26 H 0.08 0.70 7.99 -51.92 -0.41 0.29 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 31 H 0.07 0.65 7.30 -51.93 -0.38 0.27 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.14 2.00 5.67 -52.48 -0.30 1.71 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 38 H 0.05 1.33 7.50 -51.93 -0.39 0.94 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.90 7.83 -51.93 -0.41 0.50 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -32.24 339.74 -8.46 -40.70 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.94 Total: -0.76 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.53 Total: -6.54 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.01 Total: -42.23 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.07 Total: -13.24 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.24 -8.46 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228992725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.423 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds