Wall clock time and date at job start Tue Mar 31 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21300 * 119.99458 * 2 1 4 4 C 1.46778 * 120.00212 * 180.02562 * 2 1 3 5 5 C 1.40017 * 120.22614 * 270.68409 * 4 2 1 6 6 C 1.50710 * 120.05499 * 359.97438 * 5 4 2 7 7 C 1.37675 * 119.88390 * 179.70025 * 5 4 2 8 8 C 1.38622 * 120.33832 * 0.53550 * 7 5 4 9 9 C 1.38052 * 120.45389 * 359.48048 * 8 7 5 10 10 C 1.38692 * 120.11326 * 0.23496 * 9 8 7 11 11 O 1.35591 * 120.17193 * 180.02562 * 10 9 8 12 12 C 1.42900 * 117.00273 * 5.55929 * 11 10 9 13 13 H 1.09004 * 110.88654 * 32.07345 * 12 11 10 14 14 C 1.55154 * 111.00805 * 155.95595 * 12 11 10 15 15 C 1.54319 * 102.94488 * 153.57931 * 14 12 11 16 16 N 1.47022 * 107.27217 * 337.80736 * 15 14 12 17 17 C 1.36933 * 125.65369 * 178.90502 * 16 15 14 18 18 H 1.07996 * 120.00439 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99584 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00140 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47070 * 60.00184 * 21 19 17 23 23 H 1.48502 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47241 * 300.00095 * 21 19 17 25 25 C 1.47470 * 108.71912 * 358.97219 * 16 15 14 26 26 H 1.09007 * 109.46920 * 174.98571 * 1 2 3 27 27 H 1.08999 * 109.47235 * 294.97982 * 1 2 3 28 28 H 1.08997 * 109.47194 * 54.98746 * 1 2 3 29 29 H 1.09002 * 109.46664 * 84.59044 * 6 5 4 30 30 H 1.08997 * 109.47273 * 204.58516 * 6 5 4 31 31 H 1.08995 * 109.47061 * 324.59379 * 6 5 4 32 32 H 1.08003 * 119.82832 * 180.27075 * 7 5 4 33 33 H 1.07997 * 119.77386 * 179.76557 * 8 7 5 34 34 H 1.08003 * 119.94595 * 180.26279 * 9 8 7 35 35 H 1.09004 * 110.71830 * 271.93818 * 14 12 11 36 36 H 1.09000 * 110.72004 * 35.21320 * 14 12 11 37 37 H 1.09002 * 109.88613 * 97.22037 * 15 14 12 38 38 H 1.08998 * 109.88298 * 218.23559 * 15 14 12 39 39 H 0.97001 * 119.99651 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.35392 * 265.25156 * 25 16 15 41 41 H 1.09006 * 110.40640 * 142.91928 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 2.5809 -1.8893 1.2089 6 6 2.1943 -1.2504 2.5179 7 6 3.2640 -3.0846 1.2001 8 6 3.6272 -3.6747 -0.0006 9 6 3.2995 -3.0772 -1.2012 10 6 2.6065 -1.8759 -1.2143 11 8 2.2836 -1.2882 -2.3929 12 6 2.5792 -2.0191 -3.5847 13 1 2.4921 -3.0922 -3.4143 14 6 1.6675 -1.5661 -4.7555 15 6 2.5180 -1.8908 -6.0016 16 7 3.9217 -1.9505 -5.5685 17 6 4.9935 -2.2348 -6.3720 18 1 5.9899 -2.2547 -5.9562 19 6 4.7991 -2.4973 -7.7212 20 7 3.5847 -2.4725 -8.2282 21 14 6.2612 -2.8844 -8.8175 22 1 6.9515 -4.0980 -8.3117 23 1 5.7896 -3.1247 -10.2050 24 1 7.2047 -1.7379 -8.8074 25 6 3.9847 -1.6551 -4.1251 26 1 -0.3633 -1.0238 -0.0898 27 1 -0.3633 0.4340 0.9315 28 1 -0.3633 0.5896 -0.8417 29 1 1.1733 -1.5344 2.7733 30 1 2.8722 -1.5886 3.3016 31 1 2.2575 -0.1662 2.4257 32 1 3.5219 -3.5629 2.1335 33 1 4.1662 -4.6105 0.0032 34 1 3.5829 -3.5462 -2.1319 35 1 0.7384 -2.1361 -4.7636 36 1 1.4647 -0.4969 -4.6950 37 1 2.2167 -2.8531 -6.4157 38 1 2.3916 -1.1091 -6.7506 39 1 3.4489 -2.6556 -9.1710 40 1 4.1911 -0.5972 -3.9633 41 1 4.7465 -2.2689 -3.6444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228992725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:59 Heat of formation + Delta-G solvation = -41.960178 kcal Electronic energy + Delta-G solvation = -22990.403592 eV Core-core repulsion = 19642.739580 eV Total energy + Delta-G solvation = -3347.664012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.72318 -40.27226 -39.03129 -37.83302 -34.37800 -33.70946 -32.16905 -31.18712 -30.22835 -29.18213 -27.92987 -26.56024 -24.51856 -23.28616 -22.14296 -21.64050 -20.65955 -19.02045 -19.00284 -17.57591 -17.34173 -16.79651 -16.62192 -16.22728 -15.92218 -15.61129 -15.45435 -15.15085 -14.79249 -14.53040 -14.37621 -14.04580 -13.93906 -13.44527 -13.28291 -13.08831 -13.05357 -12.96704 -12.77423 -12.69339 -12.55359 -12.30834 -12.14992 -12.10770 -11.89045 -11.62016 -11.50971 -10.77734 -10.75417 -9.79564 -9.22009 -9.00610 -7.90682 -5.28685 0.12015 0.38223 0.83406 1.44979 1.48506 1.54845 1.97539 2.47372 2.61674 3.08229 3.28093 3.54269 3.60752 3.78102 3.85279 3.93754 3.96399 4.11666 4.17667 4.28514 4.38876 4.49925 4.57481 4.59226 4.61562 4.73756 4.77242 4.78051 4.80287 4.88605 4.93477 5.08171 5.17744 5.26366 5.37315 5.42073 5.50772 5.53662 5.65727 5.79316 6.10457 6.33267 6.41012 7.02617 7.66616 8.30563 9.19468 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.003830 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.963682 B = 7309.303966 C = 7898.074359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.420 3.580 3 O -0.497 6.497 4 C -0.218 4.218 5 C -0.023 4.023 6 C -0.120 4.120 7 C -0.157 4.157 8 C -0.059 4.059 9 C -0.227 4.227 10 C 0.143 3.857 11 O -0.315 6.315 12 C 0.085 3.915 13 H 0.098 0.902 14 C -0.123 4.123 15 C 0.187 3.813 16 N -0.622 5.622 17 C -0.253 4.253 18 H 0.082 0.918 19 C -0.059 4.059 20 N -0.948 5.948 21 Si 0.983 3.017 22 H -0.273 1.273 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.119 3.881 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.015 0.985 39 H 0.250 0.750 40 H 0.015 0.985 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -2.827 22.108 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.298 3.702 3 O -0.373 6.373 4 C -0.220 4.220 5 C -0.023 4.023 6 C -0.176 4.176 7 C -0.174 4.174 8 C -0.076 4.076 9 C -0.245 4.245 10 C 0.098 3.902 11 O -0.228 6.228 12 C 0.029 3.971 13 H 0.116 0.884 14 C -0.161 4.161 15 C 0.062 3.938 16 N -0.350 5.350 17 C -0.381 4.381 18 H 0.099 0.901 19 C -0.252 4.252 20 N -0.596 5.596 21 Si 0.810 3.190 22 H -0.199 1.199 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.007 4.007 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.899 -2.127 21.851 23.013 hybrid contribution 0.965 -0.169 -1.478 1.773 sum -5.934 -2.296 20.373 21.343 Atomic orbital electron populations 1.22259 0.90402 1.06122 1.05945 1.22856 0.93446 0.86596 0.67298 1.90549 1.73571 1.35652 1.37562 1.19857 1.09812 1.00305 0.92011 1.20050 0.94769 0.94311 0.93187 1.20977 1.04245 0.99770 0.92643 1.21237 1.01232 0.95646 0.99330 1.21436 0.95624 0.99609 0.90976 1.21429 1.05287 0.96872 1.00956 1.19229 0.94072 0.92174 0.84773 1.85992 1.78110 1.45963 1.12687 1.23564 0.95630 0.96083 0.81866 0.88390 1.22879 0.98481 1.02278 0.92453 1.20953 0.82242 0.98542 0.92085 1.44608 1.03791 1.82722 1.03871 1.19405 0.87259 1.40933 0.90540 0.90057 1.25677 0.99661 1.01861 0.98044 1.70142 1.20798 1.55953 1.12737 0.85104 0.78175 0.78303 0.77435 1.19897 1.21653 1.20564 1.21985 0.95909 0.97533 0.85312 0.88475 0.86195 0.88670 0.88090 0.88499 0.92747 0.81998 0.82797 0.85200 0.88176 0.90877 0.95401 0.96693 0.94037 0.96737 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 10.32 71.24 0.73 -2.66 16 2 C 0.42 11.50 4.79 27.92 0.13 11.63 16 3 O -0.50 -17.60 17.86 -3.09 -0.06 -17.65 16 4 C -0.22 -5.93 5.47 -20.07 -0.11 -6.04 16 5 C -0.02 -0.47 5.92 -19.56 -0.12 -0.58 16 6 C -0.12 -1.65 9.53 71.24 0.68 -0.97 16 7 C -0.16 -2.75 9.65 22.23 0.21 -2.54 16 8 C -0.06 -1.19 10.03 22.32 0.22 -0.97 16 9 C -0.23 -6.17 8.94 22.33 0.20 -5.97 16 10 C 0.14 4.42 6.70 22.92 0.15 4.57 16 11 O -0.31 -11.09 9.40 -89.01 -0.84 -11.93 16 12 C 0.09 3.14 2.81 31.99 0.09 3.23 16 13 H 0.10 3.33 6.22 -2.38 -0.01 3.31 16 14 C -0.12 -4.67 6.69 31.78 0.21 -4.46 16 15 C 0.19 9.31 5.37 86.73 0.47 9.78 16 16 N -0.62 -33.00 3.40 -691.88 -2.35 -35.35 16 17 C -0.25 -14.45 10.28 84.04 0.86 -13.59 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 20 N -0.95 -56.69 10.31 21.65 0.22 -56.46 16 21 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 C 0.12 5.25 6.87 86.85 0.60 5.85 16 26 H 0.10 1.43 7.99 -2.38 -0.02 1.41 16 27 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.91 8.05 -2.39 -0.02 0.89 16 31 H 0.05 0.92 7.30 -2.39 -0.02 0.91 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.13 3.69 5.67 -2.91 -0.02 3.67 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.03 1.50 7.38 -2.39 -0.02 1.48 16 38 H 0.01 0.83 7.50 -2.39 -0.02 0.81 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 2.11 7.83 -2.38 -0.02 2.09 16 Total: -1.00 -73.03 339.74 4.84 -68.19 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.02 Total: 11.06 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.81 Total: -5.60 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -2.13 Total: -91.81 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.89 Total: -29.59 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.03 4.84 -68.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228992725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.232 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds