Wall clock time and date at job start Tue Mar 31 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21294 * 119.99895 * 2 1 4 4 C 1.46785 * 120.00099 * 179.97438 * 2 1 3 5 5 C 1.40015 * 120.22283 * 354.00741 * 4 2 1 6 6 C 1.37671 * 119.88335 * 179.97438 * 5 4 2 7 7 C 1.38633 * 120.33822 * 359.97438 * 6 5 4 8 8 C 1.38056 * 120.45120 * 359.72131 * 7 6 5 9 9 C 1.50700 * 119.94423 * 180.30310 * 8 7 6 10 10 C 1.38693 * 120.10902 * 0.55507 * 8 7 6 11 11 O 1.35596 * 120.16492 * 179.71798 * 10 8 7 12 12 C 1.42905 * 116.99828 * 91.15084 * 11 10 8 13 13 H 1.08999 * 110.64214 * 18.40381 * 12 11 10 14 14 C 1.55153 * 110.71975 * 141.55378 * 12 11 10 15 15 C 1.54906 * 101.58462 * 154.04278 * 14 12 11 16 16 N 1.47429 * 104.82909 * 322.98864 * 15 14 12 17 17 C 1.36934 * 125.64806 * 204.09481 * 16 15 14 18 18 H 1.07997 * 120.00187 * 165.38311 * 17 16 15 19 19 C 1.38816 * 119.99933 * 345.38200 * 17 16 15 20 20 N 1.31616 * 120.00087 * 329.48173 * 19 17 16 21 21 Si 1.86797 * 120.00093 * 149.48620 * 19 17 16 22 22 H 1.48496 * 109.47225 * 270.00230 * 21 19 17 23 23 H 1.48504 * 109.46919 * 29.99971 * 21 19 17 24 24 H 1.48499 * 109.47165 * 149.99464 * 21 19 17 25 25 C 1.47021 * 108.70308 * 24.35244 * 16 15 14 26 26 H 1.09000 * 109.46964 * 270.00073 * 1 2 3 27 27 H 1.08994 * 109.46872 * 30.00284 * 1 2 3 28 28 H 1.09002 * 109.46736 * 150.00222 * 1 2 3 29 29 H 1.08000 * 120.06276 * 0.02562 * 5 4 2 30 30 H 1.08000 * 119.83719 * 179.97438 * 6 5 4 31 31 H 1.07995 * 119.77598 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.46966 * 274.57824 * 9 8 7 33 33 H 1.09002 * 109.47382 * 34.57270 * 9 8 7 34 34 H 1.08994 * 109.47440 * 154.57723 * 9 8 7 35 35 H 1.08995 * 111.00885 * 35.96575 * 14 12 11 36 36 H 1.09004 * 111.00047 * 272.11601 * 14 12 11 37 37 H 1.08996 * 110.36833 * 204.15085 * 15 14 12 38 38 H 1.08999 * 110.46419 * 81.86720 * 15 14 12 39 39 H 0.97005 * 119.99977 * 356.81005 * 20 19 17 40 40 H 1.09004 * 109.87991 * 118.13548 * 25 16 15 41 41 H 1.09001 * 109.88535 * 239.29556 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2410 -1.2712 0.0006 5 6 1.5514 -2.4831 0.1274 6 6 2.2467 -3.6713 0.1266 7 6 3.6273 -3.6747 0.0002 8 6 4.3206 -2.4882 -0.1321 9 6 5.8207 -2.5055 -0.2756 10 6 3.6394 -1.2801 -0.1278 11 8 4.3199 -0.1138 -0.2518 12 6 4.5022 0.3933 -1.5754 13 1 3.7929 -0.0659 -2.2639 14 6 4.3646 1.9386 -1.5950 15 6 5.2208 2.3115 -2.8309 16 7 6.3546 1.3696 -2.8026 17 6 7.5796 1.5778 -3.3778 18 1 8.4156 0.9485 -3.1107 19 6 7.7470 2.5978 -4.3045 20 7 6.7418 2.9602 -5.0729 21 14 9.3988 3.4559 -4.4608 22 1 9.4402 4.6212 -3.5413 23 1 10.4849 2.5071 -4.1067 24 1 9.5844 3.9214 -5.8587 25 6 5.9500 0.1670 -2.0597 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 0.4758 -2.4859 0.2249 30 1 1.7141 -4.6057 0.2249 31 1 4.1636 -4.6120 0.0010 32 1 6.2799 -2.5354 0.7126 33 1 6.1213 -3.3865 -0.8427 34 1 6.1459 -1.6073 -0.8003 35 1 4.7765 2.3791 -0.6871 36 1 3.3255 2.2365 -1.7352 37 1 5.5782 3.3379 -2.7490 38 1 4.6440 2.1833 -3.7468 39 1 5.8980 2.4841 -5.0245 40 1 5.9924 -0.7042 -2.7134 41 1 6.6074 0.0221 -1.2025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230317424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:22 Heat of formation + Delta-G solvation = -21.062291 kcal Electronic energy + Delta-G solvation = -23535.096083 eV Core-core repulsion = 20188.338272 eV Total energy + Delta-G solvation = -3346.757812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60628 -38.56763 -37.94210 -36.15694 -33.15916 -32.44449 -30.90080 -29.56539 -29.01847 -27.69318 -26.41113 -24.33989 -23.67546 -21.88673 -20.37162 -20.19108 -19.52296 -17.92738 -17.54544 -16.45450 -16.18869 -15.46272 -15.09715 -14.69723 -14.55756 -14.13276 -13.86641 -13.77405 -13.53953 -13.22663 -12.88194 -12.68529 -12.54841 -12.38398 -12.28863 -11.96145 -11.88178 -11.68375 -11.51210 -11.15681 -10.66905 -10.64370 -10.40715 -10.01929 -9.94172 -9.79710 -9.53858 -9.26426 -8.97931 -8.64105 -8.32258 -6.91452 -6.11639 -3.08626 0.53592 1.10030 2.38267 3.38399 3.54155 3.57588 3.73314 3.95796 3.97643 4.58923 4.61884 4.73360 4.88234 5.04210 5.10930 5.18790 5.20517 5.24079 5.31469 5.35634 5.42380 5.56635 5.58897 5.68392 5.71516 5.74571 5.83138 6.04157 6.14834 6.21482 6.25118 6.30730 6.40083 6.46982 6.52689 6.63247 6.76080 7.00716 7.09845 7.59162 7.79516 7.84429 8.51268 9.03927 9.84867 10.39749 11.24257 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.004494 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.582759 B = 6229.566264 C = 7123.007023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.381 3.619 3 O -0.425 6.425 4 C -0.194 4.194 5 C -0.073 4.073 6 C -0.142 4.142 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.129 4.129 10 C 0.161 3.839 11 O -0.311 6.311 12 C 0.095 3.905 13 H 0.061 0.939 14 C -0.120 4.120 15 C 0.142 3.858 16 N -0.599 5.599 17 C -0.340 4.340 18 H 0.067 0.933 19 C -0.025 4.025 20 N -0.914 5.914 21 Si 1.069 2.931 22 H -0.293 1.293 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.120 3.880 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.269 0.731 40 H 0.024 0.976 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.027 -13.385 11.297 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.257 3.743 3 O -0.299 6.299 4 C -0.195 4.195 5 C -0.091 4.091 6 C -0.160 4.160 7 C -0.099 4.099 8 C -0.113 4.113 9 C -0.185 4.185 10 C 0.116 3.884 11 O -0.227 6.227 12 C 0.040 3.960 13 H 0.079 0.921 14 C -0.158 4.158 15 C 0.016 3.984 16 N -0.327 5.327 17 C -0.468 4.468 18 H 0.085 0.915 19 C -0.226 4.226 20 N -0.555 5.555 21 Si 0.899 3.101 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.217 1.217 25 C -0.006 4.006 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.690 -11.478 10.588 19.507 hybrid contribution -1.040 -1.697 0.690 2.107 sum -12.730 -13.175 11.279 21.514 Atomic orbital electron populations 1.22218 0.94102 1.04706 1.04397 1.22282 0.91360 0.87760 0.72892 1.90648 1.71665 1.33667 1.33889 1.21002 0.93729 0.95807 1.08974 1.21297 0.99855 0.91036 0.96896 1.21062 0.94248 0.98082 1.02570 1.21183 0.94228 0.97429 0.97012 1.20354 0.97581 0.92134 1.01229 1.21030 0.90148 1.04493 1.02857 1.18912 0.88703 0.86243 0.94548 1.85985 1.73321 1.34713 1.28709 1.23390 0.96929 0.95525 0.80194 0.92082 1.22914 1.00172 0.92611 1.00152 1.21591 0.88349 0.95115 0.93316 1.44492 1.11813 1.12922 1.63520 1.19756 0.84860 1.19388 1.22769 0.91542 1.25751 1.05329 0.98884 0.92682 1.70772 1.05394 1.45992 1.33349 0.83451 0.74507 0.76174 0.75982 1.22025 1.21865 1.21668 1.21798 0.92430 0.91048 0.95300 0.88811 0.89449 0.89894 0.84909 0.85371 0.85324 0.90914 0.91466 0.89239 0.90602 0.91101 0.92516 0.95682 0.92005 0.95791 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 9.63 36.01 0.35 -1.33 16 2 C 0.38 5.13 7.20 -30.85 -0.22 4.91 16 3 O -0.43 -7.42 13.62 -16.28 -0.22 -7.64 16 4 C -0.19 -2.59 5.88 -104.95 -0.62 -3.21 16 5 C -0.07 -0.71 9.32 -39.12 -0.36 -1.07 16 6 C -0.14 -1.29 10.02 -39.64 -0.40 -1.69 16 7 C -0.08 -0.85 9.70 -39.50 -0.38 -1.23 16 8 C -0.11 -1.54 5.89 -104.52 -0.62 -2.15 16 9 C -0.13 -1.72 9.83 36.01 0.35 -1.37 16 10 C 0.16 2.55 5.53 -38.59 -0.21 2.34 16 11 O -0.31 -5.87 7.46 -40.31 -0.30 -6.17 16 12 C 0.09 1.90 3.00 -24.89 -0.07 1.83 16 13 H 0.06 1.20 7.85 -51.93 -0.41 0.79 16 14 C -0.12 -2.54 5.85 -24.59 -0.14 -2.68 16 15 C 0.14 3.53 5.30 -2.53 -0.01 3.52 16 16 N -0.60 -16.08 3.31 -170.07 -0.56 -16.64 16 17 C -0.34 -9.97 10.01 -15.06 -0.15 -10.12 16 18 H 0.07 1.94 7.99 -52.49 -0.42 1.52 16 19 C -0.02 -0.72 5.03 -17.43 -0.09 -0.81 16 20 N -0.91 -28.28 12.97 55.49 0.72 -27.56 16 21 Si 1.07 26.09 30.01 -169.99 -5.10 20.98 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.12 2.71 5.28 -3.06 -0.02 2.69 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.52 6.72 -51.93 -0.35 0.17 16 29 H 0.13 0.85 6.53 -52.49 -0.34 0.51 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.09 1.44 3.55 -51.93 -0.18 1.26 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.40 7.30 -51.93 -0.38 1.02 16 37 H 0.06 1.52 7.89 -51.93 -0.41 1.11 16 38 H 0.03 0.65 6.85 -51.93 -0.36 0.30 16 39 H 0.27 8.34 6.05 -40.82 -0.25 8.09 16 40 H 0.02 0.54 8.00 -51.93 -0.42 0.13 16 41 H 0.04 0.91 6.74 -51.93 -0.35 0.56 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -34.38 328.43 -8.73 -43.11 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.61 Total: -0.66 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.60 Total: -10.37 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.16 Total: -44.20 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.52 Total: -13.81 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.10 Total: 20.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.38 -8.73 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230317424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.047 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds