Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21254 * 120.00408 * 2 1 4 4 C 1.47186 * 120.00031 * 180.02562 * 2 1 3 5 5 C 1.39809 * 120.14226 * 358.41936 * 4 2 1 6 6 C 1.38381 * 119.76252 * 180.02562 * 5 4 2 7 7 O 1.35915 * 119.96876 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00165 * 173.57579 * 7 6 5 9 9 C 1.53509 * 114.17220 * 200.99779 * 8 7 6 10 10 N 1.47482 * 87.93048 * 220.33031 * 9 8 7 11 11 C 1.46903 * 111.00102 * 138.70760 * 10 9 8 12 12 C 1.50697 * 109.47271 * 169.99874 * 11 10 9 13 13 H 1.07998 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99984 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99524 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00144 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46757 * 269.99817 * 16 14 12 18 18 H 1.48501 * 109.47137 * 29.99864 * 16 14 12 19 19 H 1.48496 * 109.47407 * 149.99915 * 16 14 12 20 20 C 1.47478 * 87.83714 * 27.00976 * 10 9 8 21 21 C 1.38894 * 120.06019 * 0.27966 * 6 5 4 22 22 C 1.38289 * 120.29351 * 359.45059 * 21 6 5 23 23 C 1.37935 * 120.23383 * 0.54916 * 22 21 6 24 24 C 1.50700 * 120.03103 * 179.70816 * 23 22 21 25 25 H 1.08996 * 109.47568 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46915 * 300.00267 * 1 2 3 27 27 H 1.08999 * 109.46751 * 59.99593 * 1 2 3 28 28 H 1.07999 * 120.11632 * 0.05402 * 5 4 2 29 29 H 1.09001 * 113.25462 * 333.95216 * 8 7 6 30 30 H 1.09000 * 113.47627 * 105.56837 * 9 8 7 31 31 H 1.08993 * 113.47763 * 335.09605 * 9 8 7 32 32 H 1.08996 * 109.47058 * 49.99234 * 11 10 9 33 33 H 1.09002 * 109.46757 * 289.99797 * 11 10 9 34 34 H 0.97006 * 119.99333 * 180.02562 * 15 14 12 35 35 H 1.09005 * 113.47424 * 87.75767 * 20 10 9 36 36 H 1.09000 * 113.47656 * 218.21939 * 20 10 9 37 37 H 1.08003 * 119.84852 * 179.70277 * 21 6 5 38 38 H 1.08001 * 119.88502 * 180.25116 * 22 21 6 39 39 H 1.09000 * 109.46948 * 262.72462 * 24 23 22 40 40 H 1.09001 * 109.47315 * 22.71963 * 24 23 22 41 41 H 1.08995 * 109.47136 * 142.72307 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5473 -2.4870 0.0322 6 6 2.2471 -3.6808 0.0320 7 8 1.5751 -4.8617 0.0633 8 6 2.3504 -6.0534 -0.0812 9 6 1.5441 -7.2759 -0.5414 10 7 2.3279 -8.0845 0.4109 11 6 1.4714 -9.0518 1.1099 12 6 2.3317 -10.0170 1.8841 13 1 3.4072 -9.9216 1.8591 14 6 1.7458 -11.0218 2.6245 15 7 0.4361 -11.1375 2.6554 16 14 2.8121 -12.2177 3.5848 17 1 3.1445 -13.3833 2.7268 18 1 4.0643 -11.5381 4.0035 19 1 2.0752 -12.6824 4.7873 20 6 2.5088 -6.8612 1.2145 21 6 3.6358 -3.6731 0.0051 22 6 4.3262 -2.4755 -0.0330 23 6 3.6409 -1.2785 -0.0331 24 6 4.3980 0.0240 -0.0681 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.4676 -2.4917 0.0572 29 1 3.2790 -5.8987 -0.6306 30 1 1.7177 -7.5433 -1.5837 31 1 0.4848 -7.2166 -0.2915 32 1 0.8741 -9.6008 0.3820 33 1 0.8109 -8.5224 1.7966 34 1 0.0239 -11.8442 3.1766 35 1 1.7069 -6.6912 1.9330 36 1 3.4999 -6.7771 1.6603 37 1 4.1786 -4.6068 0.0099 38 1 5.4059 -2.4774 -0.0578 39 1 4.4916 0.4171 0.9443 40 1 5.3907 -0.1438 -0.4858 41 1 3.8594 0.7409 -0.6878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234323218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -5.258321 kcal Electronic energy + Delta-G solvation = -22012.194502 eV Core-core repulsion = 18666.122002 eV Total energy + Delta-G solvation = -3346.072500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79867 -39.92776 -38.53758 -36.77311 -32.99836 -32.64290 -31.74815 -29.83144 -29.15786 -26.71525 -25.67324 -25.18886 -24.09097 -22.08907 -21.51892 -20.17199 -19.37483 -18.20734 -16.62145 -16.28928 -15.92616 -15.75835 -15.55806 -15.20849 -14.94727 -14.54664 -14.44799 -14.10768 -13.75963 -13.66478 -13.22514 -12.80527 -12.52362 -12.38454 -12.29159 -12.18183 -12.07046 -11.90475 -11.66083 -11.59514 -11.11404 -10.99124 -10.62872 -10.35463 -10.04847 -9.86924 -9.68866 -9.31868 -9.25077 -8.50102 -8.18354 -8.06938 -6.09588 -4.11398 0.41216 1.22653 2.17884 3.13216 3.28742 3.34614 3.38708 3.54681 3.82831 4.37638 4.47733 4.61832 4.66382 4.74349 4.77379 4.85646 5.04759 5.09647 5.12780 5.16297 5.20854 5.25928 5.48798 5.58812 5.61042 5.69435 5.78114 5.84066 5.89476 6.00062 6.06644 6.11419 6.15951 6.24381 6.36603 6.42845 6.53647 7.07460 7.27777 7.42426 7.54099 7.74771 7.99940 8.34617 8.95598 9.53000 11.01506 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.002759 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.530721 B =10145.707765 C =10508.329047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.398 3.602 3 O -0.456 6.456 4 C -0.143 4.143 5 C -0.109 4.109 6 C 0.121 3.879 7 O -0.301 6.301 8 C 0.041 3.959 9 C 0.004 3.996 10 N -0.460 5.460 11 C 0.161 3.839 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.273 1.273 19 H -0.287 1.287 20 C -0.004 4.004 21 C -0.169 4.169 22 C -0.095 4.095 23 C -0.067 4.067 24 C -0.118 4.118 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.007 0.993 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 20.786 -6.690 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.278 3.722 3 O -0.332 6.332 4 C -0.144 4.144 5 C -0.127 4.127 6 C 0.075 3.925 7 O -0.213 6.213 8 C -0.015 4.015 9 C -0.125 4.125 10 N -0.185 5.185 11 C 0.035 3.965 12 C -0.546 4.546 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.729 3.271 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.212 1.212 20 C -0.134 4.134 21 C -0.187 4.187 22 C -0.113 4.113 23 C -0.068 4.068 24 C -0.174 4.174 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.159 0.841 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.206 20.747 -6.793 22.065 hybrid contribution -0.170 -0.775 0.945 1.234 sum 3.036 19.973 -5.848 21.031 Atomic orbital electron populations 1.22262 0.93743 1.05177 1.04884 1.22424 0.91620 0.87431 0.70747 1.90478 1.71434 1.34542 1.36790 1.20071 0.93735 0.94026 1.06546 1.20729 1.00437 0.88947 1.02614 1.18917 0.90658 0.86499 0.96439 1.86199 1.36482 1.12093 1.86573 1.24558 0.95947 0.81119 0.99872 1.24029 0.98101 0.90189 1.00154 1.69034 1.34972 1.05022 1.09472 1.20291 0.91894 0.90944 0.93355 1.21068 0.93631 1.12188 1.27712 0.91795 1.25011 0.95069 0.97794 0.96817 1.69957 1.08990 1.33262 1.41628 0.86450 0.80267 0.81110 0.79323 1.20553 1.19804 1.21238 1.24297 1.02878 0.90914 0.95280 1.21651 0.93463 0.99780 1.03833 1.20872 1.00053 0.90976 0.99414 1.20091 0.92435 0.96014 0.98234 1.21040 0.98923 0.94324 1.03153 0.89525 0.88707 0.88757 0.84080 0.87484 0.89626 0.90811 0.95015 0.97545 0.92810 0.90629 0.90081 0.84414 0.85171 0.91090 0.92383 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 10.19 36.00 0.37 -1.01 16 2 C 0.40 4.02 7.19 -30.68 -0.22 3.79 16 3 O -0.46 -5.58 14.01 5.58 0.08 -5.50 16 4 C -0.14 -1.57 5.87 -105.08 -0.62 -2.18 16 5 C -0.11 -1.21 9.38 -38.94 -0.37 -1.57 16 6 C 0.12 1.54 6.67 -39.29 -0.26 1.28 16 7 O -0.30 -4.37 10.18 -19.47 -0.20 -4.57 16 8 C 0.04 0.62 3.96 -26.20 -0.10 0.51 16 9 C 0.00 0.07 7.52 -7.54 -0.06 0.02 16 10 N -0.46 -9.65 6.32 -246.12 -1.55 -11.21 16 11 C 0.16 4.12 4.57 -4.98 -0.02 4.10 16 12 C -0.51 -14.25 9.39 -34.44 -0.32 -14.58 16 13 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 C 0.00 -0.08 7.55 -7.55 -0.06 -0.14 16 21 C -0.17 -1.95 9.01 -39.32 -0.35 -2.31 16 22 C -0.10 -1.00 9.65 -39.67 -0.38 -1.38 16 23 C -0.07 -0.74 5.92 -104.14 -0.62 -1.36 16 24 C -0.12 -1.16 8.78 36.01 0.32 -0.84 16 25 H 0.09 0.50 5.61 -51.93 -0.29 0.21 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.14 1.29 5.93 -52.49 -0.31 0.98 16 29 H 0.11 1.40 6.07 -51.93 -0.31 1.08 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 32 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.08 1.45 7.42 -51.93 -0.39 1.07 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.14 1.48 5.95 -52.48 -0.31 1.17 16 38 H 0.13 1.08 8.05 -52.49 -0.42 0.66 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 41 H 0.09 0.98 5.76 -51.93 -0.30 0.68 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -31.23 338.70 -9.27 -40.51 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.62 Total: -0.85 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.80 Total: -14.22 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.82 Total: -36.97 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.12 Total: -10.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.23 -9.27 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234323218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.248 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds