Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21254 * 120.00408 * 2 1 4 4 C 1.47186 * 120.00031 * 180.02562 * 2 1 3 5 5 C 1.39809 * 120.14226 * 358.41936 * 4 2 1 6 6 C 1.38381 * 119.76252 * 180.02562 * 5 4 2 7 7 O 1.35915 * 119.96876 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00165 * 173.57579 * 7 6 5 9 9 C 1.53509 * 114.17220 * 200.99779 * 8 7 6 10 10 N 1.47482 * 87.93048 * 220.33031 * 9 8 7 11 11 C 1.46903 * 111.00102 * 138.70760 * 10 9 8 12 12 C 1.50697 * 109.47271 * 169.99874 * 11 10 9 13 13 H 1.07998 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99984 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99524 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00144 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46757 * 269.99817 * 16 14 12 18 18 H 1.48501 * 109.47137 * 29.99864 * 16 14 12 19 19 H 1.48496 * 109.47407 * 149.99915 * 16 14 12 20 20 C 1.47478 * 87.83714 * 27.00976 * 10 9 8 21 21 C 1.38894 * 120.06019 * 0.27966 * 6 5 4 22 22 C 1.38289 * 120.29351 * 359.45059 * 21 6 5 23 23 C 1.37935 * 120.23383 * 0.54916 * 22 21 6 24 24 C 1.50700 * 120.03103 * 179.70816 * 23 22 21 25 25 H 1.08996 * 109.47568 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46915 * 300.00267 * 1 2 3 27 27 H 1.08999 * 109.46751 * 59.99593 * 1 2 3 28 28 H 1.07999 * 120.11632 * 0.05402 * 5 4 2 29 29 H 1.09001 * 113.25462 * 333.95216 * 8 7 6 30 30 H 1.09000 * 113.47627 * 105.56837 * 9 8 7 31 31 H 1.08993 * 113.47763 * 335.09605 * 9 8 7 32 32 H 1.08996 * 109.47058 * 49.99234 * 11 10 9 33 33 H 1.09002 * 109.46757 * 289.99797 * 11 10 9 34 34 H 0.97006 * 119.99333 * 180.02562 * 15 14 12 35 35 H 1.09005 * 113.47424 * 87.75767 * 20 10 9 36 36 H 1.09000 * 113.47656 * 218.21939 * 20 10 9 37 37 H 1.08003 * 119.84852 * 179.70277 * 21 6 5 38 38 H 1.08001 * 119.88502 * 180.25116 * 22 21 6 39 39 H 1.09000 * 109.46948 * 262.72462 * 24 23 22 40 40 H 1.09001 * 109.47315 * 22.71963 * 24 23 22 41 41 H 1.08995 * 109.47136 * 142.72307 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5473 -2.4870 0.0322 6 6 2.2471 -3.6808 0.0320 7 8 1.5751 -4.8617 0.0633 8 6 2.3504 -6.0534 -0.0812 9 6 1.5441 -7.2759 -0.5414 10 7 2.3279 -8.0845 0.4109 11 6 1.4714 -9.0518 1.1099 12 6 2.3317 -10.0170 1.8841 13 1 3.4072 -9.9216 1.8591 14 6 1.7458 -11.0218 2.6245 15 7 0.4361 -11.1375 2.6554 16 14 2.8121 -12.2177 3.5848 17 1 3.1445 -13.3833 2.7268 18 1 4.0643 -11.5381 4.0035 19 1 2.0752 -12.6824 4.7873 20 6 2.5088 -6.8612 1.2145 21 6 3.6358 -3.6731 0.0051 22 6 4.3262 -2.4755 -0.0330 23 6 3.6409 -1.2785 -0.0331 24 6 4.3980 0.0240 -0.0681 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.4676 -2.4917 0.0572 29 1 3.2790 -5.8987 -0.6306 30 1 1.7177 -7.5433 -1.5837 31 1 0.4848 -7.2166 -0.2915 32 1 0.8741 -9.6008 0.3820 33 1 0.8109 -8.5224 1.7966 34 1 0.0239 -11.8442 3.1766 35 1 1.7069 -6.6912 1.9330 36 1 3.4999 -6.7771 1.6603 37 1 4.1786 -4.6068 0.0099 38 1 5.4059 -2.4774 -0.0578 39 1 4.4916 0.4171 0.9443 40 1 5.3907 -0.1438 -0.4858 41 1 3.8594 0.7409 -0.6878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234323218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -25.360459 kcal Electronic energy + Delta-G solvation = -22013.066196 eV Core-core repulsion = 18666.122002 eV Total energy + Delta-G solvation = -3346.944194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84047 -41.01398 -39.62991 -37.83753 -35.05195 -33.49638 -32.63069 -31.27904 -30.20277 -27.78516 -27.14642 -26.71185 -25.07013 -23.67820 -22.43787 -21.41430 -20.51988 -19.20015 -18.55178 -17.49470 -16.89716 -16.86981 -16.59062 -16.39433 -16.13534 -16.05499 -15.51359 -15.09181 -14.95308 -14.75239 -14.29691 -14.19025 -13.91718 -13.73884 -13.35641 -13.16108 -12.98832 -12.98287 -12.81791 -12.64286 -12.63543 -12.40981 -12.26094 -12.04484 -11.72270 -11.34998 -11.20250 -10.63787 -10.47825 -10.09656 -9.81727 -9.11702 -8.25176 -6.35756 -0.42137 0.35081 1.37668 1.40163 1.41566 1.52908 2.03487 2.38793 2.68435 3.07353 3.09373 3.23662 3.33703 3.72554 3.75388 3.91831 3.95113 4.10161 4.21744 4.30696 4.42144 4.43905 4.53709 4.59202 4.64189 4.64751 4.73242 4.79971 4.82316 4.84861 4.99814 5.00669 5.07869 5.12072 5.25138 5.30718 5.51980 5.54098 5.67531 5.71068 6.00824 6.33706 6.39037 6.51769 6.78137 7.33973 8.86229 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.002759 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.530721 B =10145.707765 C =10508.329047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.482 6.482 4 C -0.154 4.154 5 C -0.105 4.105 6 C 0.095 3.905 7 O -0.312 6.312 8 C 0.073 3.927 9 C 0.000 4.000 10 N -0.475 5.475 11 C 0.176 3.824 12 C -0.528 4.528 13 H 0.062 0.938 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.972 3.028 17 H -0.271 1.271 18 H -0.264 1.264 19 H -0.281 1.281 20 C -0.011 4.011 21 C -0.172 4.172 22 C -0.095 4.095 23 C -0.076 4.076 24 C -0.115 4.115 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.158 0.842 29 H 0.135 0.865 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.006 0.994 33 H -0.019 1.019 34 H 0.266 0.734 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 21.552 -6.952 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.360 6.360 4 C -0.155 4.155 5 C -0.124 4.124 6 C 0.050 3.950 7 O -0.225 6.225 8 C 0.016 3.984 9 C -0.129 4.129 10 N -0.199 5.199 11 C 0.049 3.951 12 C -0.566 4.566 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.197 1.197 18 H -0.189 1.189 19 H -0.206 1.206 20 C -0.140 4.140 21 C -0.190 4.190 22 C -0.113 4.113 23 C -0.077 4.077 24 C -0.171 4.171 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.175 0.825 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.024 0.976 33 H -0.001 1.001 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.457 21.533 -7.067 23.098 hybrid contribution -0.567 -0.885 0.997 1.449 sum 3.890 20.648 -6.071 21.871 Atomic orbital electron populations 1.22293 0.91077 1.06261 1.06010 1.22823 0.93048 0.86612 0.69636 1.90475 1.72250 1.35153 1.38171 1.20308 0.94109 0.94475 1.06565 1.20915 1.01387 0.88433 1.01619 1.19150 0.91412 0.86079 0.98363 1.86162 1.36729 1.12447 1.87138 1.24195 0.96168 0.80860 0.97171 1.24085 0.97580 0.90824 1.00373 1.68905 1.34578 1.05920 1.10499 1.19940 0.91553 0.91375 0.92249 1.21411 0.93779 1.13064 1.28337 0.92022 1.25949 0.96391 0.99630 0.97742 1.70078 1.10786 1.34107 1.42449 0.85345 0.78577 0.78641 0.77845 1.19683 1.18865 1.20636 1.24323 1.02698 0.90520 0.96447 1.21795 0.93081 1.00600 1.03526 1.21128 1.01279 0.90289 0.98591 1.20410 0.92820 0.96756 0.97680 1.21009 0.99628 0.93494 1.02943 0.88478 0.87615 0.87392 0.82464 0.84818 0.87508 0.91784 0.97602 1.00120 0.92533 0.92476 0.89088 0.83602 0.82816 0.91275 0.90516 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 10.19 71.24 0.73 -1.58 16 2 C 0.40 7.51 7.19 28.04 0.20 7.71 16 3 O -0.48 -11.43 14.01 -2.95 -0.04 -11.47 16 4 C -0.15 -3.16 5.87 -20.16 -0.12 -3.27 16 5 C -0.11 -2.18 9.38 22.68 0.21 -1.96 16 6 C 0.09 2.27 6.67 22.46 0.15 2.42 16 7 O -0.31 -8.69 10.18 -92.60 -0.94 -9.63 16 8 C 0.07 2.07 3.96 30.94 0.12 2.19 16 9 C 0.00 0.01 7.52 83.57 0.63 0.64 16 10 N -0.48 -20.07 6.32 -932.96 -5.89 -25.96 16 11 C 0.18 9.32 4.57 85.56 0.39 9.71 16 12 C -0.53 -30.13 9.39 25.60 0.24 -29.89 16 13 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 16 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.01 -0.38 7.55 83.58 0.63 0.25 16 21 C -0.17 -3.62 9.01 22.44 0.20 -3.42 16 22 C -0.10 -1.78 9.65 22.21 0.21 -1.57 16 23 C -0.08 -1.55 5.92 -19.55 -0.12 -1.67 16 24 C -0.11 -2.08 8.78 71.24 0.63 -1.46 16 25 H 0.10 0.90 5.61 -2.39 -0.01 0.89 16 26 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.16 2.60 5.93 -2.91 -0.02 2.58 16 29 H 0.13 3.13 6.07 -2.39 -0.01 3.11 16 30 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.06 2.28 7.91 -2.39 -0.02 2.27 16 32 H 0.01 0.33 8.08 -2.39 -0.02 0.32 16 33 H -0.02 -1.08 7.30 -2.39 -0.02 -1.10 16 34 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 35 H 0.06 2.26 7.42 -2.38 -0.02 2.25 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.15 2.76 5.95 -2.91 -0.02 2.75 16 38 H 0.15 2.08 8.05 -2.91 -0.02 2.05 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 41 H 0.08 1.66 5.76 -2.39 -0.01 1.64 16 Total: -1.00 -68.06 338.70 1.05 -67.02 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.04 Total: 11.06 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.57 Total: -21.36 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -5.61 Total: -81.74 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.98 Total: -21.11 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.06 1.05 -67.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234323218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.656 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds