Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 119.99777 * 2 1 4 4 H 1.07999 * 119.99680 * 162.51111 * 3 2 1 5 5 C 1.38812 * 120.00261 * 342.22999 * 3 2 1 6 6 N 1.31608 * 120.00152 * 343.09904 * 5 3 2 7 7 Si 1.86801 * 119.99824 * 163.09918 * 5 3 2 8 8 H 1.48502 * 109.47450 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47101 * 120.00108 * 7 5 3 10 10 H 1.48501 * 109.47383 * 240.00111 * 7 5 3 11 11 C 1.46495 * 119.99773 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47209 * 269.99930 * 11 2 1 13 13 C 1.38293 * 119.87972 * 259.72764 * 12 11 2 14 14 C 1.38388 * 120.60319 * 179.73280 * 13 12 11 15 15 C 1.38265 * 119.93238 * 0.53748 * 14 13 12 16 16 C 1.40156 * 119.76760 * 359.73168 * 15 14 13 17 17 C 1.38724 * 119.88116 * 79.99964 * 12 11 2 18 18 O 1.35826 * 120.28589 * 359.97438 * 17 12 11 19 19 C 1.47793 * 118.45066 * 179.97438 * 16 15 14 20 20 C 1.33180 * 118.05402 * 16.36907 * 19 16 15 21 21 C 1.50588 * 120.01924 * 0.61608 * 20 19 16 22 22 C 1.53002 * 109.25466 * 89.02906 * 21 20 19 23 23 C 1.53005 * 109.25458 * 208.49855 * 21 20 19 24 24 O 1.35772 * 121.38751 * 179.73203 * 15 14 13 25 25 H 1.09006 * 109.47182 * 84.77862 * 1 2 3 26 26 H 1.09005 * 109.47336 * 204.77792 * 1 2 3 27 27 H 1.09005 * 109.46922 * 324.77853 * 1 2 3 28 28 H 0.97000 * 120.00407 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47551 * 29.99864 * 11 2 1 30 30 H 1.09000 * 109.47101 * 150.00044 * 11 2 1 31 31 H 1.08001 * 119.69577 * 0.02562 * 13 12 11 32 32 H 1.07996 * 120.03250 * 180.25621 * 14 13 12 33 33 H 0.96705 * 113.99859 * 89.99691 * 18 17 12 34 34 H 1.07998 * 120.97150 * 196.38995 * 19 16 15 35 35 H 1.07997 * 119.98873 * 180.60337 * 20 19 16 36 36 H 1.09007 * 109.46571 * 59.99966 * 22 21 20 37 37 H 1.08994 * 109.47085 * 179.97438 * 22 21 20 38 38 H 1.08993 * 109.46970 * 300.00373 * 22 21 20 39 39 H 1.08999 * 109.47128 * 60.00138 * 23 21 20 40 40 H 1.09001 * 109.46946 * 180.02562 * 23 21 20 41 41 H 1.09004 * 109.46886 * 299.99862 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1922 1.2075 0.2811 5 6 1.5052 2.3594 -0.3669 6 7 0.3655 2.3069 -1.0228 7 14 2.2559 4.0131 0.0704 8 1 3.5305 3.8003 0.8022 9 1 2.5218 4.7803 -1.1730 10 1 1.3126 4.7735 0.9290 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4200 13 6 3.6861 -1.4882 1.9984 14 6 3.9313 -1.8773 3.3036 15 6 2.9371 -2.4981 4.0369 16 6 1.6823 -2.7253 3.4552 17 6 1.4395 -2.3259 2.1410 18 8 0.2253 -2.5432 1.5722 19 6 0.6410 -3.3917 4.2652 20 6 0.8135 -3.4466 5.5846 21 6 2.0352 -2.8280 6.2111 22 6 1.7450 -1.3630 6.5434 23 6 2.3770 -3.5794 7.4994 24 8 3.1472 -2.8968 5.3176 25 1 -0.3634 0.0935 -1.0234 26 1 -0.3634 -0.9331 0.4307 27 1 -0.3633 0.8396 0.5927 28 1 -0.0847 3.1268 -1.2795 29 1 1.6084 -2.0282 -0.5147 30 1 3.1499 -1.1382 -0.5143 31 1 4.4667 -1.0072 1.4277 32 1 4.8998 -1.7003 3.7474 33 1 0.1507 -3.3930 1.1168 34 1 -0.2340 -3.8217 3.8006 35 1 0.0769 -3.9347 6.2054 36 1 0.9090 -1.3075 7.2407 37 1 2.6271 -0.9119 6.9976 38 1 1.4918 -0.8264 5.6292 39 1 2.5753 -4.6259 7.2679 40 1 3.2608 -3.1341 7.9561 41 1 1.5380 -3.5132 8.1921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249252861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = -11.867883 kcal Electronic energy + Delta-G solvation = -23542.264775 eV Core-core repulsion = 20195.905663 eV Total energy + Delta-G solvation = -3346.359112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80616 -38.70865 -36.15566 -35.30074 -34.19886 -32.76849 -31.25434 -29.24313 -28.54281 -27.45809 -25.79690 -25.35126 -23.13068 -22.19507 -22.02384 -20.57906 -18.73811 -17.82993 -16.84434 -16.59844 -16.20710 -15.31502 -15.02071 -14.81237 -14.36734 -14.20749 -13.86856 -13.36026 -13.32578 -12.99709 -12.79972 -12.75447 -12.44534 -12.28406 -12.19188 -11.68509 -11.61046 -11.41672 -11.02886 -10.85302 -10.80265 -10.60548 -10.34508 -10.24154 -10.03816 -9.95036 -9.73594 -9.68599 -8.46808 -8.02055 -7.64090 -6.72090 -5.65090 -3.06075 1.04342 1.64937 2.51567 3.38523 3.42019 3.49334 3.51286 3.99603 4.45428 4.57512 4.59482 4.70361 4.86057 4.91743 5.14830 5.36795 5.38842 5.46008 5.52780 5.59543 5.61348 5.68211 5.73203 5.84839 5.88701 6.04079 6.09712 6.13541 6.21458 6.32007 6.37130 6.62630 6.67715 6.80580 7.00548 7.07903 7.16039 7.56930 7.60409 7.81810 7.92036 8.01297 8.44317 9.30980 9.95632 10.42823 11.39316 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.004789 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.152649 B = 5845.361250 C = 6249.439803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.590 5.590 3 C -0.252 4.252 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.905 5.905 7 Si 0.899 3.101 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.290 1.290 11 C 0.193 3.807 12 C -0.130 4.130 13 C -0.058 4.058 14 C -0.155 4.155 15 C 0.129 3.871 16 C -0.170 4.170 17 C 0.162 3.838 18 O -0.479 6.479 19 C -0.070 4.070 20 C -0.207 4.207 21 C 0.150 3.850 22 C -0.173 4.173 23 C -0.134 4.134 24 O -0.309 6.309 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.036 0.964 28 H 0.250 0.750 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.380 0.620 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -13.984 12.828 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.311 5.311 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.729 3.271 8 H -0.204 1.204 9 H -0.218 1.218 10 H -0.217 1.217 11 C 0.065 3.935 12 C -0.134 4.134 13 C -0.077 4.077 14 C -0.174 4.174 15 C 0.084 3.916 16 C -0.171 4.171 17 C 0.116 3.884 18 O -0.288 6.288 19 C -0.088 4.088 20 C -0.225 4.225 21 C 0.112 3.888 22 C -0.230 4.230 23 C -0.191 4.191 24 O -0.224 6.224 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.236 0.764 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.419 -13.328 13.058 18.815 hybrid contribution 0.061 0.691 0.074 0.698 sum 2.480 -12.636 13.132 18.392 Atomic orbital electron populations 1.20940 0.81971 0.96996 0.98854 1.43902 1.02159 0.99946 1.85075 1.19237 0.95367 0.84787 1.38714 0.91380 1.24853 0.97741 0.98008 0.99146 1.70145 1.18336 1.26137 1.40424 0.86270 0.78457 0.84604 0.77765 1.20373 1.21840 1.21713 1.19569 0.96589 0.88931 0.88416 1.21542 0.92027 0.98251 1.01614 1.20878 0.96746 0.96655 0.93461 1.20477 0.99562 1.02025 0.95319 1.18617 0.93302 0.95564 0.84074 1.19323 0.95042 1.06921 0.95813 1.17945 0.84638 0.96384 0.89430 1.84923 1.29678 1.41213 1.73017 1.21633 0.96801 0.96884 0.93495 1.23719 0.98951 1.03740 0.96070 1.20535 0.83997 0.95424 0.88805 1.22406 1.02383 0.95306 1.02908 1.21781 1.02596 1.00524 0.94205 1.86004 1.36901 1.81726 1.17820 0.95932 0.95632 0.94509 0.93966 0.93648 0.92668 0.85177 0.85511 0.76433 0.85302 0.85618 0.91128 0.91504 0.91696 0.91628 0.91422 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.98 59.85 0.54 4.58 16 2 N -0.59 -15.15 2.91 -182.50 -0.53 -15.68 16 3 C -0.25 -7.06 9.68 -15.06 -0.15 -7.20 16 4 H 0.07 1.86 7.89 -52.49 -0.41 1.44 16 5 C 0.00 0.01 5.03 -17.44 -0.09 -0.08 16 6 N -0.90 -27.14 10.63 55.49 0.59 -26.55 16 7 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 C 0.19 3.97 5.47 -5.20 -0.03 3.94 16 12 C -0.13 -2.43 5.48 -104.42 -0.57 -3.00 16 13 C -0.06 -1.00 9.64 -39.51 -0.38 -1.38 16 14 C -0.16 -2.50 10.01 -39.52 -0.40 -2.90 16 15 C 0.13 2.14 5.83 -38.85 -0.23 1.91 16 16 C -0.17 -2.81 5.78 -104.80 -0.61 -3.42 16 17 C 0.16 2.83 6.69 -38.94 -0.26 2.57 16 18 O -0.48 -7.71 9.53 -19.19 -0.18 -7.90 16 19 C -0.07 -0.98 9.75 -37.44 -0.37 -1.35 16 20 C -0.21 -2.55 8.75 -36.13 -0.32 -2.87 16 21 C 0.15 1.88 1.08 -91.82 -0.10 1.78 16 22 C -0.17 -2.16 8.51 37.16 0.32 -1.84 16 23 C -0.13 -1.24 8.79 37.16 0.33 -0.91 16 24 O -0.31 -4.72 9.79 -19.03 -0.19 -4.91 16 25 H 0.02 0.62 7.46 -51.93 -0.39 0.23 16 26 H 0.03 0.58 5.19 -51.93 -0.27 0.31 16 27 H 0.04 1.04 7.10 -51.93 -0.37 0.68 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 0.86 7.79 -51.93 -0.40 0.45 16 30 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 31 H 0.13 2.07 8.02 -52.49 -0.42 1.65 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.38 4.14 9.06 45.56 0.41 4.55 16 34 H 0.13 1.57 7.90 -52.49 -0.41 1.16 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.00 7.76 -51.93 -0.40 0.59 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -33.18 334.43 -7.78 -40.96 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.17 Total: 1.77 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.30 Total: -10.16 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.06 Total: -42.23 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.37 Total: -12.81 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.18 -7.78 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249252861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.087 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds