Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 119.99777 * 2 1 4 4 H 1.07999 * 119.99680 * 162.51111 * 3 2 1 5 5 C 1.38812 * 120.00261 * 342.22999 * 3 2 1 6 6 N 1.31608 * 120.00152 * 343.09904 * 5 3 2 7 7 Si 1.86801 * 119.99824 * 163.09918 * 5 3 2 8 8 H 1.48502 * 109.47450 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47101 * 120.00108 * 7 5 3 10 10 H 1.48501 * 109.47383 * 240.00111 * 7 5 3 11 11 C 1.46495 * 119.99773 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47209 * 269.99930 * 11 2 1 13 13 C 1.38293 * 119.87972 * 259.72764 * 12 11 2 14 14 C 1.38388 * 120.60319 * 179.73280 * 13 12 11 15 15 C 1.38265 * 119.93238 * 0.53748 * 14 13 12 16 16 C 1.40156 * 119.76760 * 359.73168 * 15 14 13 17 17 C 1.38724 * 119.88116 * 79.99964 * 12 11 2 18 18 O 1.35826 * 120.28589 * 359.97438 * 17 12 11 19 19 C 1.47793 * 118.45066 * 179.97438 * 16 15 14 20 20 C 1.33180 * 118.05402 * 16.36907 * 19 16 15 21 21 C 1.50588 * 120.01924 * 0.61608 * 20 19 16 22 22 C 1.53002 * 109.25466 * 89.02906 * 21 20 19 23 23 C 1.53005 * 109.25458 * 208.49855 * 21 20 19 24 24 O 1.35772 * 121.38751 * 179.73203 * 15 14 13 25 25 H 1.09006 * 109.47182 * 84.77862 * 1 2 3 26 26 H 1.09005 * 109.47336 * 204.77792 * 1 2 3 27 27 H 1.09005 * 109.46922 * 324.77853 * 1 2 3 28 28 H 0.97000 * 120.00407 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47551 * 29.99864 * 11 2 1 30 30 H 1.09000 * 109.47101 * 150.00044 * 11 2 1 31 31 H 1.08001 * 119.69577 * 0.02562 * 13 12 11 32 32 H 1.07996 * 120.03250 * 180.25621 * 14 13 12 33 33 H 0.96705 * 113.99859 * 89.99691 * 18 17 12 34 34 H 1.07998 * 120.97150 * 196.38995 * 19 16 15 35 35 H 1.07997 * 119.98873 * 180.60337 * 20 19 16 36 36 H 1.09007 * 109.46571 * 59.99966 * 22 21 20 37 37 H 1.08994 * 109.47085 * 179.97438 * 22 21 20 38 38 H 1.08993 * 109.46970 * 300.00373 * 22 21 20 39 39 H 1.08999 * 109.47128 * 60.00138 * 23 21 20 40 40 H 1.09001 * 109.46946 * 180.02562 * 23 21 20 41 41 H 1.09004 * 109.46886 * 299.99862 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1922 1.2075 0.2811 5 6 1.5052 2.3594 -0.3669 6 7 0.3655 2.3069 -1.0228 7 14 2.2559 4.0131 0.0704 8 1 3.5305 3.8003 0.8022 9 1 2.5218 4.7803 -1.1730 10 1 1.3126 4.7735 0.9290 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4200 13 6 3.6861 -1.4882 1.9984 14 6 3.9313 -1.8773 3.3036 15 6 2.9371 -2.4981 4.0369 16 6 1.6823 -2.7253 3.4552 17 6 1.4395 -2.3259 2.1410 18 8 0.2253 -2.5432 1.5722 19 6 0.6410 -3.3917 4.2652 20 6 0.8135 -3.4466 5.5846 21 6 2.0352 -2.8280 6.2111 22 6 1.7450 -1.3630 6.5434 23 6 2.3770 -3.5794 7.4994 24 8 3.1472 -2.8968 5.3176 25 1 -0.3634 0.0935 -1.0234 26 1 -0.3634 -0.9331 0.4307 27 1 -0.3633 0.8396 0.5927 28 1 -0.0847 3.1268 -1.2795 29 1 1.6084 -2.0282 -0.5147 30 1 3.1499 -1.1382 -0.5143 31 1 4.4667 -1.0072 1.4277 32 1 4.8998 -1.7003 3.7474 33 1 0.1507 -3.3930 1.1168 34 1 -0.2340 -3.8217 3.8006 35 1 0.0769 -3.9347 6.2054 36 1 0.9090 -1.3075 7.2407 37 1 2.6271 -0.9119 6.9976 38 1 1.4918 -0.8264 5.6292 39 1 2.5753 -4.6259 7.2679 40 1 3.2608 -3.1341 7.9561 41 1 1.5380 -3.5132 8.1921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249252861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = -32.720383 kcal Electronic energy + Delta-G solvation = -23543.169007 eV Core-core repulsion = 20195.905663 eV Total energy + Delta-G solvation = -3347.263344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96151 -39.96752 -37.49773 -37.06550 -35.27878 -34.10819 -32.99874 -30.78584 -29.72911 -28.33513 -27.87381 -26.97857 -24.37532 -23.60874 -23.21556 -22.21329 -19.95563 -19.04023 -18.68225 -17.87573 -17.49688 -16.92083 -16.43853 -16.05769 -15.85093 -15.44461 -15.19815 -15.01301 -14.83796 -14.42930 -14.06066 -13.89178 -13.64615 -13.44300 -13.30314 -13.07052 -12.93460 -12.76552 -12.63703 -12.58210 -12.34355 -12.15338 -12.01157 -11.91017 -11.81947 -11.38076 -11.27178 -11.00401 -10.60182 -9.28696 -8.92013 -8.75219 -7.80097 -5.23323 -0.12925 0.34683 1.38258 1.43470 1.45314 1.55271 2.29627 2.51123 2.76385 3.24746 3.32304 3.59100 3.74328 3.87420 3.92834 3.96359 3.98623 4.10776 4.32960 4.44994 4.55335 4.66374 4.67939 4.76266 4.84217 4.87680 4.98128 5.04701 5.08934 5.11176 5.16925 5.21952 5.27149 5.42307 5.50856 5.60746 5.66368 5.70556 5.75192 5.83441 6.31900 6.42584 6.90323 7.16992 7.90940 8.33722 9.22923 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.004789 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.152649 B = 5845.361250 C = 6249.439803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.607 5.607 3 C -0.255 4.255 4 H 0.072 0.928 5 C -0.057 4.057 6 N -0.939 5.939 7 Si 0.961 3.039 8 H -0.266 1.266 9 H -0.290 1.290 10 H -0.296 1.296 11 C 0.194 3.806 12 C -0.152 4.152 13 C -0.066 4.066 14 C -0.160 4.160 15 C 0.123 3.877 16 C -0.176 4.176 17 C 0.156 3.844 18 O -0.491 6.491 19 C -0.100 4.100 20 C -0.187 4.187 21 C 0.134 3.866 22 C -0.170 4.170 23 C -0.129 4.129 24 O -0.317 6.317 25 H -0.004 1.004 26 H 0.054 0.946 27 H 0.000 1.000 28 H 0.245 0.755 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.402 0.598 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -15.291 15.301 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.329 5.329 3 C -0.385 4.385 4 H 0.090 0.910 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.790 3.210 8 H -0.191 1.191 9 H -0.217 1.217 10 H -0.223 1.223 11 C 0.068 3.932 12 C -0.156 4.156 13 C -0.085 4.085 14 C -0.178 4.178 15 C 0.078 3.922 16 C -0.177 4.177 17 C 0.111 3.889 18 O -0.303 6.303 19 C -0.118 4.118 20 C -0.205 4.205 21 C 0.097 3.903 22 C -0.228 4.228 23 C -0.186 4.186 24 O -0.233 6.233 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.178 0.822 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.934 -14.690 15.544 21.588 hybrid contribution -0.079 0.948 -0.568 1.108 sum 2.855 -13.742 14.976 20.525 Atomic orbital electron populations 1.20617 0.82578 0.96794 0.96727 1.44111 1.02146 1.01189 1.85449 1.19581 0.95681 0.85935 1.37274 0.90980 1.25616 0.98552 1.01253 0.99758 1.70299 1.19843 1.26461 1.42071 0.85289 0.77931 0.80509 0.77309 1.19051 1.21674 1.22287 1.19657 0.96250 0.87209 0.90071 1.21290 0.93379 1.00483 1.00411 1.20996 0.96554 0.96819 0.94111 1.20676 1.00482 1.01762 0.94916 1.18818 0.93370 0.95168 0.84829 1.19578 0.95903 1.06598 0.95663 1.17995 0.84539 0.96423 0.89972 1.84811 1.29150 1.43086 1.73298 1.21803 0.97245 0.98574 0.94180 1.24136 0.98912 1.01613 0.95844 1.21002 0.83687 0.95968 0.89631 1.22403 1.03629 0.94972 1.01759 1.21823 1.03991 1.00105 0.92631 1.86009 1.38443 1.81462 1.17370 0.98531 0.92780 0.98131 0.94535 0.92149 0.92519 0.84489 0.83619 0.73871 0.83816 0.82223 0.88706 0.90938 0.95201 0.91263 0.91010 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.39 8.98 127.77 1.15 10.54 16 2 N -0.61 -31.58 2.91 -731.30 -2.13 -33.71 16 3 C -0.25 -14.43 9.68 84.03 0.81 -13.62 16 4 H 0.07 3.94 7.89 -2.91 -0.02 3.91 16 5 C -0.06 -3.35 5.03 84.86 0.43 -2.92 16 6 N -0.94 -57.93 10.63 21.65 0.23 -57.70 16 7 Si 0.96 46.85 29.59 68.60 2.03 48.88 16 8 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 11 C 0.19 7.99 5.47 85.63 0.47 8.46 16 12 C -0.15 -5.65 5.48 -19.74 -0.11 -5.75 16 13 C -0.07 -2.24 9.64 22.32 0.22 -2.03 16 14 C -0.16 -5.02 10.01 22.31 0.22 -4.80 16 15 C 0.12 3.95 5.83 22.74 0.13 4.08 16 16 C -0.18 -5.66 5.78 -19.98 -0.12 -5.77 16 17 C 0.16 5.39 6.69 22.69 0.15 5.55 16 18 O -0.49 -15.37 9.53 -91.60 -0.87 -16.25 16 19 C -0.10 -2.61 9.75 23.66 0.23 -2.38 16 20 C -0.19 -4.03 8.75 24.51 0.21 -3.81 16 21 C 0.13 2.99 1.08 -11.57 -0.01 2.98 16 22 C -0.17 -3.89 8.51 71.98 0.61 -3.28 16 23 C -0.13 -1.87 8.79 71.98 0.63 -1.24 16 24 O -0.32 -9.10 9.79 -91.00 -0.89 -9.99 16 25 H 0.00 -0.21 7.46 -2.38 -0.02 -0.22 16 26 H 0.05 2.49 5.19 -2.38 -0.01 2.48 16 27 H 0.00 -0.01 7.10 -2.38 -0.02 -0.03 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.06 2.25 7.79 -2.39 -0.02 2.24 16 30 H 0.06 2.27 7.89 -2.39 -0.02 2.25 16 31 H 0.14 4.31 8.02 -2.91 -0.02 4.29 16 32 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.40 8.24 9.06 -74.05 -0.67 7.57 16 34 H 0.14 3.20 7.90 -2.91 -0.02 3.17 16 35 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.03 0.88 7.76 -2.39 -0.02 0.86 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.54 334.43 3.76 -68.78 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.36 Total: 13.99 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.03 Total: -14.00 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -1.90 Total: -91.41 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.76 Total: -26.23 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -72.54 3.76 -68.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249252861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.057 kcal (2) G-P(sol) polarization free energy of solvation -72.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds