Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 115.54784 * 2 1 4 4 C 1.53004 * 109.46994 * 34.33287 * 3 2 1 5 5 C 1.50697 * 109.46882 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00060 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99895 * 179.97438 * 5 4 3 8 8 C 1.39922 * 119.99812 * 174.55619 * 7 5 4 9 9 C 1.38958 * 120.03888 * 325.02606 * 8 7 5 10 10 C 1.38160 * 120.06860 * 180.29558 * 9 8 7 11 11 C 1.38169 * 120.13814 * 359.95954 * 10 9 8 12 12 C 1.38914 * 120.07007 * 0.04367 * 11 10 9 13 13 O 1.35747 * 120.03039 * 179.97438 * 12 11 10 14 14 C 1.34837 * 116.99840 * 185.62408 * 13 12 11 15 15 H 1.07995 * 119.99867 * 5.35499 * 14 13 12 16 16 C 1.38649 * 119.99976 * 185.35819 * 14 13 12 17 17 N 1.31560 * 120.00166 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99961 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46930 * 60.00071 * 18 16 14 20 20 H 1.48497 * 109.47146 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47235 * 299.99834 * 18 16 14 22 22 C 1.38714 * 120.02953 * 145.30052 * 8 7 5 23 23 C 1.52995 * 117.51814 * 145.70327 * 2 1 3 24 24 C 1.52999 * 117.49891 * 214.33718 * 2 1 3 25 25 H 1.08999 * 109.46746 * 85.57974 * 1 2 3 26 26 H 1.09001 * 109.47279 * 205.57993 * 1 2 3 27 27 H 1.08996 * 109.47175 * 325.57854 * 1 2 3 28 28 H 1.08993 * 109.47223 * 274.33199 * 3 2 1 29 29 H 1.09004 * 109.46800 * 154.32661 * 3 2 1 30 30 H 1.09006 * 109.47095 * 59.99676 * 4 3 2 31 31 H 1.08997 * 109.47096 * 299.99633 * 4 3 2 32 32 H 0.96999 * 119.99661 * 354.56161 * 7 5 4 33 33 H 1.08003 * 119.96806 * 0.27878 * 9 8 7 34 34 H 1.08003 * 119.93017 * 179.97438 * 10 9 8 35 35 H 1.07997 * 119.96405 * 180.02562 * 11 10 9 36 36 H 0.96998 * 120.00076 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.07649 * 359.70480 * 22 8 7 38 38 H 1.09002 * 117.49918 * 214.96939 * 23 2 1 39 39 H 1.09001 * 117.50199 * 359.97438 * 23 2 1 40 40 H 1.08999 * 117.49781 * 359.97163 * 24 2 1 41 41 H 1.08996 * 117.50410 * 144.99814 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3543 0.8136 5 6 1.9853 3.7137 0.8141 6 8 3.0294 3.8868 0.2216 7 7 1.4061 4.7375 1.4721 8 6 2.0642 5.9685 1.5691 9 6 3.4482 6.0100 1.6865 10 6 4.0981 7.2249 1.7885 11 6 3.3748 8.4021 1.7731 12 6 1.9911 8.3673 1.6560 13 8 1.2812 9.5243 1.6415 14 6 -0.0629 9.4178 1.6432 15 1 -0.5276 8.4480 1.7428 16 6 -0.8485 10.5532 1.5169 17 7 -0.2824 11.7345 1.3949 18 14 -2.7107 10.4056 1.5184 19 1 -3.1581 9.8004 2.7985 20 1 -3.3143 11.7543 1.3702 21 1 -3.1399 9.5448 0.3871 22 6 1.3352 7.1486 1.5537 23 6 2.2369 -1.1209 0.7646 24 6 2.2365 -1.1206 -0.7655 25 1 -0.3633 0.0792 -1.0246 26 1 -0.3634 -0.9269 0.4437 27 1 -0.3633 0.8477 0.5809 28 1 2.2765 1.7417 -1.0247 29 1 3.1823 1.3087 0.4453 30 1 1.2484 1.9929 1.8384 31 1 0.3427 2.4260 0.3684 32 1 0.5331 4.6209 1.8784 33 1 4.0164 5.0916 1.6984 34 1 5.1739 7.2546 1.8801 35 1 3.8858 9.3502 1.8526 36 1 -0.8320 12.5290 1.3069 37 1 0.2595 7.1190 1.4622 38 1 3.1721 -0.8750 1.2676 39 1 1.6120 -1.8585 1.2682 40 1 1.6112 -1.8581 -1.2687 41 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262264248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -21.837839 kcal Electronic energy + Delta-G solvation = -21899.178280 eV Core-core repulsion = 18552.386838 eV Total energy + Delta-G solvation = -3346.791442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25775 -38.90175 -38.30988 -36.42977 -34.20379 -32.57922 -32.21095 -29.41852 -28.73029 -28.32907 -25.48669 -25.00309 -22.70524 -21.88104 -21.75033 -19.96897 -18.99763 -17.98316 -17.71156 -16.89687 -15.82664 -15.65232 -15.38812 -15.03236 -14.65145 -14.39946 -14.20351 -13.79887 -13.59538 -13.35513 -13.15161 -12.95453 -12.53513 -12.41512 -12.28169 -11.81633 -11.73455 -11.54291 -11.41099 -11.22537 -11.10324 -10.94514 -10.81215 -10.48373 -10.38284 -9.86333 -9.84547 -9.61928 -9.37830 -8.81406 -7.73711 -7.16200 -6.45535 -4.05470 1.97059 2.37177 2.87277 3.10909 3.12558 3.15169 3.25075 3.48648 3.95059 4.39278 4.43308 4.57425 4.63558 4.66632 4.93176 5.04113 5.09817 5.10223 5.27469 5.34400 5.37567 5.46827 5.53880 5.63242 5.71179 5.76728 5.83124 5.86741 5.97636 5.98238 6.07181 6.13036 6.25883 6.28264 6.63621 6.97495 6.99406 7.11476 7.30459 7.41482 7.70380 7.81439 7.98451 8.33964 8.99613 9.70136 10.72482 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020029 B = 0.003182 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.634180 B = 8797.272697 C =10013.901927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.128 4.128 3 C -0.066 4.066 4 C -0.139 4.139 5 C 0.508 3.492 6 O -0.522 6.522 7 N -0.672 5.672 8 C 0.180 3.820 9 C -0.205 4.205 10 C -0.063 4.063 11 C -0.201 4.201 12 C 0.168 3.832 13 O -0.176 6.176 14 C -0.393 4.393 15 H 0.089 0.911 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.256 4.256 23 C -0.177 4.177 24 C -0.176 4.176 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.406 0.594 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -21.785 -0.080 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.179 4.179 5 C 0.295 3.705 6 O -0.397 6.397 7 N -0.317 5.317 8 C 0.087 3.913 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.221 4.221 12 C 0.114 3.886 13 O -0.079 6.079 14 C -0.469 4.469 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.278 4.278 23 C -0.214 4.214 24 C -0.213 4.213 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.241 0.759 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.042 -21.222 -0.536 21.255 hybrid contribution -1.481 -0.192 0.160 1.502 sum -0.439 -21.415 -0.377 21.422 Atomic orbital electron populations 1.21499 0.92090 1.02274 1.02188 1.21535 0.94840 0.91080 1.05377 1.20854 0.98029 0.90513 1.00940 1.21772 1.01024 0.91895 1.03172 1.20834 0.85484 0.86155 0.78003 1.90723 1.23165 1.83898 1.41909 1.43568 1.22286 1.10815 1.55017 1.17417 0.91744 0.83610 0.98511 1.20500 0.92560 0.98000 1.11544 1.20527 0.98521 0.91430 0.97734 1.20248 0.91478 0.98445 1.11881 1.19092 0.91339 0.86154 0.92065 1.84021 1.19805 1.24906 1.79189 1.21219 0.78064 0.95232 1.52393 0.89324 1.25276 1.00404 0.94291 0.96494 1.70026 1.36255 0.97983 1.45451 0.85799 0.80669 0.77977 0.79071 1.19521 1.20261 1.19572 1.20830 1.00587 0.90835 1.15513 1.23180 1.02507 1.01251 0.94418 1.23024 1.02588 1.01246 0.94446 0.92123 0.92545 0.91313 0.90668 0.90893 0.88609 0.88370 0.75884 0.86567 0.86632 0.86376 0.91951 0.85273 0.88803 0.88975 0.88912 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.49 37.16 0.35 -0.50 16 2 C -0.13 -1.04 2.47 -154.51 -0.38 -1.42 16 3 C -0.07 -0.65 4.69 -26.73 -0.13 -0.77 16 4 C -0.14 -1.31 4.71 -27.88 -0.13 -1.44 16 5 C 0.51 7.26 7.55 -10.98 -0.08 7.17 16 6 O -0.52 -9.49 13.79 5.55 0.08 -9.41 16 7 N -0.67 -9.98 5.33 -9.88 -0.05 -10.03 16 8 C 0.18 3.46 6.24 -83.72 -0.52 2.94 16 9 C -0.21 -3.98 8.66 -39.34 -0.34 -4.32 16 10 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 11 C -0.20 -4.35 9.99 -39.36 -0.39 -4.75 16 12 C 0.17 4.09 6.64 -39.13 -0.26 3.83 16 13 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16 14 C -0.39 -10.87 9.44 30.88 0.29 -10.57 16 15 H 0.09 2.24 5.29 -52.49 -0.28 1.96 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 18 Si 0.94 20.21 29.55 -169.99 -5.02 15.18 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.26 -5.57 9.05 -39.21 -0.35 -5.92 16 23 C -0.18 -1.32 9.82 -26.73 -0.26 -1.58 16 24 C -0.18 -1.35 9.97 -26.73 -0.27 -1.61 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 27 H 0.07 0.43 5.59 -51.93 -0.29 0.14 16 28 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 29 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.76 6.45 -51.93 -0.33 0.43 16 32 H 0.41 4.65 8.82 -40.82 -0.36 4.29 16 33 H 0.12 2.19 6.53 -52.48 -0.34 1.85 16 34 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.13 2.74 5.71 -52.49 -0.30 2.44 16 38 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 39 H 0.09 0.60 8.05 -51.93 -0.42 0.19 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -32.77 343.01 -7.69 -40.47 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.65 Total: 7.63 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.97 Total: -19.56 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.71 Total: -34.48 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.77 -7.69 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262264248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.630 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds