Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00255 * 2 1 4 4 H 1.48495 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47116 * 300.00119 * 3 2 1 6 6 H 1.48500 * 109.47179 * 59.99861 * 3 2 1 7 7 C 1.38800 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99728 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99895 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46931 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47301 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47124 * 174.69748 * 12 11 10 14 14 C 1.47447 * 111.00119 * 174.90186 * 13 12 11 15 15 C 1.54312 * 107.23809 * 236.74583 * 14 13 12 16 16 H 1.08995 * 110.70625 * 96.09135 * 15 14 13 17 17 C 1.52994 * 110.70928 * 219.33181 * 15 14 13 18 18 O 1.42898 * 109.46931 * 293.54672 * 17 15 14 19 19 C 1.55142 * 103.01584 * 337.71479 * 15 14 13 20 20 H 1.08997 * 110.99132 * 277.55891 * 19 15 14 21 21 C 1.53003 * 110.98955 * 153.74356 * 19 15 14 22 22 C 1.53005 * 109.47037 * 181.27594 * 21 19 15 23 23 O 1.42894 * 109.46945 * 180.02562 * 22 21 19 24 24 C 1.47842 * 111.00036 * 54.06021 * 13 12 11 25 25 H 0.96998 * 119.99511 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47122 * 60.00072 * 10 9 7 27 27 H 1.09000 * 109.47023 * 300.00071 * 10 9 7 28 28 H 1.08998 * 109.47203 * 59.99430 * 11 10 9 29 29 H 1.09000 * 109.47071 * 299.99731 * 11 10 9 30 30 H 1.09005 * 109.46882 * 54.69881 * 12 11 10 31 31 H 1.08997 * 109.47272 * 294.70006 * 12 11 10 32 32 H 1.09004 * 109.88281 * 356.15257 * 14 13 12 33 33 H 1.08997 * 109.89106 * 117.33436 * 14 13 12 34 34 H 1.09005 * 109.47217 * 53.54374 * 17 15 14 35 35 H 1.09002 * 109.47192 * 173.54309 * 17 15 14 36 36 H 0.96709 * 113.99784 * 179.97438 * 18 17 15 37 37 H 1.08990 * 109.47227 * 301.27658 * 21 19 15 38 38 H 1.09004 * 109.46805 * 61.28192 * 21 19 15 39 39 H 1.09000 * 109.47159 * 300.00019 * 22 21 19 40 40 H 1.09000 * 109.47098 * 60.00205 * 22 21 19 41 41 H 0.96706 * 113.99994 * 180.02562 * 23 22 21 42 42 H 1.08999 * 110.37665 * 265.19036 * 24 13 12 43 43 H 1.08999 * 110.37373 * 27.53277 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1513 -6.3078 -0.0018 13 7 2.6399 -7.6790 0.1255 14 6 3.7314 -8.6632 0.0069 15 6 3.3633 -9.6171 -1.1488 16 1 3.8411 -9.3014 -2.0762 17 6 3.7466 -11.0576 -0.8042 18 8 5.1691 -11.1651 -0.7212 19 6 1.8222 -9.4682 -1.2475 20 1 1.3212 -10.0974 -0.5119 21 6 1.3305 -9.7842 -2.6615 22 6 -0.1865 -9.5960 -2.7279 23 8 -0.6457 -9.8917 -4.0483 24 6 1.6310 -7.9671 -0.9160 25 1 -0.4849 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8894 27 1 3.1244 -3.7313 -0.8905 28 1 1.3708 -5.4840 -0.8913 29 1 1.3704 -5.4846 0.8886 30 1 3.8114 -6.0868 0.8369 31 1 3.7055 -6.2120 -0.9355 32 1 4.6680 -8.1527 -0.2175 33 1 3.8264 -9.2254 0.9359 34 1 3.3050 -11.3319 0.1539 35 1 3.3762 -11.7277 -1.5801 36 1 5.4845 -12.0534 -0.5050 37 1 1.8114 -9.1120 -3.3721 38 1 1.5800 -10.8156 -2.9109 39 1 -0.6674 -10.2682 -2.0173 40 1 -0.4359 -8.5647 -2.4785 41 1 -1.6007 -9.7929 -4.1639 42 1 0.6269 -7.7883 -0.5316 43 1 1.8139 -7.3569 -1.8005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308165022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = -149.828939 kcal Electronic energy + Delta-G solvation = -20821.537679 eV Core-core repulsion = 17604.640078 eV Total energy + Delta-G solvation = -3216.897601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77412 -37.88793 -37.65823 -35.78962 -34.61846 -33.43697 -31.60666 -28.69046 -27.93085 -27.10425 -25.22160 -23.91264 -22.17953 -21.26578 -21.14733 -19.55786 -18.42621 -18.00097 -17.05863 -16.91025 -16.77530 -16.60754 -16.10802 -15.77442 -15.35910 -15.06715 -14.92759 -14.58790 -14.45834 -14.05055 -13.52692 -13.37110 -13.29191 -13.08975 -12.98266 -12.91461 -12.63984 -12.41164 -12.27842 -12.03121 -11.97821 -11.80456 -11.57884 -11.53143 -11.30843 -11.16463 -10.88767 -10.79294 -10.33880 -9.30684 -8.67970 -8.38782 -6.14991 1.30657 1.37492 1.48490 1.72768 2.26782 2.91143 2.95451 3.12364 3.29518 3.37738 3.51737 3.79143 3.94811 4.02500 4.13818 4.19866 4.25934 4.32379 4.36191 4.41106 4.44296 4.51047 4.52982 4.59192 4.66646 4.70268 4.76638 4.80230 4.89787 4.96623 5.00981 5.10316 5.13653 5.21550 5.26194 5.37631 5.38769 5.98980 6.05109 6.17164 6.89212 6.93757 7.03570 8.70976 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019608 B = 0.002931 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.626286 B = 9550.124855 C =10666.050464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.071 0.929 9 S -0.194 6.194 10 C -0.088 4.088 11 C -0.082 4.082 12 C 0.065 3.935 13 N -0.536 5.536 14 C 0.054 3.946 15 C -0.102 4.102 16 H 0.070 0.930 17 C 0.091 3.909 18 O -0.594 6.594 19 C -0.074 4.074 20 H 0.103 0.897 21 C -0.105 4.105 22 C 0.072 3.928 23 O -0.598 6.598 24 C 0.042 3.958 25 H 0.272 0.728 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.397 0.603 42 H 0.083 0.917 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 -25.280 -2.706 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.686 4.686 8 H 0.089 0.911 9 S 0.034 5.966 10 C -0.238 4.238 11 C -0.121 4.121 12 C -0.064 4.064 13 N -0.260 5.260 14 C -0.074 4.074 15 C -0.121 4.121 16 H 0.088 0.912 17 C 0.013 3.987 18 O -0.403 6.403 19 C -0.093 4.093 20 H 0.122 0.878 21 C -0.143 4.143 22 C -0.006 4.006 23 O -0.407 6.407 24 C -0.086 4.086 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.247 0.753 42 H 0.101 0.899 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.443 -24.869 -2.438 25.224 hybrid contribution 1.421 1.191 -0.577 1.942 sum 4.864 -23.677 -3.015 24.359 Atomic orbital electron populations 1.70158 1.07654 1.28509 1.48013 1.26076 0.96068 1.03117 0.93739 0.84956 0.78386 0.76605 0.78357 1.18747 1.19609 1.19550 1.23072 0.94702 0.92036 1.58832 0.91053 1.84588 1.13894 1.01074 1.97021 1.23157 1.00232 0.97613 1.02791 1.21182 0.97822 0.90416 1.02657 1.22203 0.96019 0.87814 1.00407 1.63661 1.12740 1.02115 1.47477 1.22812 0.92744 0.93151 0.98670 1.22370 0.95425 0.95657 0.98669 0.91158 1.22120 0.81121 0.94796 1.00670 1.86449 1.21981 1.37539 1.94347 1.22157 0.94137 0.95901 0.97095 0.87848 1.21429 0.94632 1.02749 0.95477 1.22256 0.94828 0.99647 0.83833 1.86397 1.30174 1.92531 1.31557 1.23196 0.96938 0.95525 0.92924 0.91923 0.91887 0.92271 0.91889 0.91284 0.90470 0.94897 0.93414 0.89901 0.92015 0.92134 0.75242 0.92606 0.90253 0.91831 0.93629 0.75302 0.89884 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.22 21.65 0.29 -54.98 16 2 C 0.01 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.51 29.55 68.60 2.03 46.54 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.71 9.50 67.95 0.65 -31.06 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.19 -10.56 21.44 -56.49 -1.21 -11.77 16 10 C -0.09 -3.68 5.67 71.98 0.41 -3.27 16 11 C -0.08 -2.75 4.87 30.59 0.15 -2.60 16 12 C 0.07 1.82 4.63 86.30 0.40 2.22 16 13 N -0.54 -13.08 5.28 -885.55 -4.67 -17.76 16 14 C 0.05 1.14 6.34 86.64 0.55 1.69 16 15 C -0.10 -1.77 2.70 -9.62 -0.03 -1.80 16 16 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 17 C 0.09 1.18 6.36 71.98 0.46 1.63 16 18 O -0.59 -8.83 13.50 -148.98 -2.01 -10.84 16 19 C -0.07 -1.19 2.51 -9.41 -0.02 -1.21 16 20 H 0.10 1.40 8.05 -2.39 -0.02 1.38 16 21 C -0.10 -1.69 5.10 30.60 0.16 -1.54 16 22 C 0.07 1.12 6.90 71.98 0.50 1.62 16 23 O -0.60 -10.49 13.66 -148.98 -2.03 -12.52 16 24 C 0.04 0.91 4.08 86.78 0.35 1.26 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.06 2.58 8.14 -2.40 -0.02 2.57 16 27 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 28 H 0.06 2.12 6.94 -2.39 -0.02 2.10 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.03 0.92 8.10 -2.39 -0.02 0.90 16 32 H 0.05 1.10 7.56 -2.38 -0.02 1.08 16 33 H 0.08 1.67 7.77 -2.39 -0.02 1.65 16 34 H 0.06 0.66 8.06 -2.38 -0.02 0.64 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.40 2.14 9.12 -74.05 -0.68 1.47 16 37 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.76 7.45 -2.39 -0.02 0.74 16 41 H 0.40 3.54 9.12 -74.05 -0.68 2.87 16 42 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 43 H 0.04 0.99 7.17 -2.39 -0.02 0.97 16 Total: -1.00 -72.98 358.76 -3.95 -76.93 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.36 Total: 16.14 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 4.03 Total: -31.74 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -4.39 Total: -72.74 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -4.05 Total: -23.36 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.21 Total: -11.77 kcal Total: -72.98 -3.95 -76.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308165022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.896 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds