Wall clock time and date at job start Tue Mar 31 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48493 * 109.47404 * 240.00849 * 3 2 1 5 5 H 1.48506 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47146 * 120.00644 * 3 2 1 7 7 C 1.38797 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00152 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99721 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46851 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47109 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.48856 * 111.13147 * 285.32028 * 13 12 11 15 15 C 1.54382 * 104.63073 * 201.00447 * 14 13 12 16 16 H 1.08997 * 110.32536 * 264.95830 * 15 14 13 17 17 C 1.53000 * 110.32322 * 142.75131 * 15 14 13 18 18 O 1.42893 * 109.47529 * 69.36192 * 17 15 14 19 19 C 1.54257 * 105.06052 * 23.85208 * 15 14 13 20 20 H 1.09002 * 110.32308 * 118.90057 * 19 15 14 21 21 C 1.53005 * 110.32310 * 241.10353 * 19 15 14 22 22 C 1.53000 * 109.46716 * 182.09179 * 21 19 15 23 23 O 1.42905 * 109.46742 * 180.02562 * 22 21 19 24 24 C 1.48562 * 111.00344 * 169.99909 * 13 12 11 25 25 H 0.96995 * 119.99936 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46880 * 60.00091 * 10 9 7 27 27 H 1.08998 * 109.47139 * 299.99602 * 10 9 7 28 28 H 1.08999 * 109.47426 * 60.00276 * 11 10 9 29 29 H 1.08999 * 109.47090 * 300.00124 * 11 10 9 30 30 H 1.08996 * 109.47570 * 59.99700 * 12 11 10 31 31 H 1.09009 * 109.47170 * 299.99902 * 12 11 10 32 32 H 1.09003 * 110.39541 * 82.21242 * 14 13 12 33 33 H 1.08998 * 110.39292 * 319.79096 * 14 13 12 34 34 H 1.09007 * 109.47109 * 189.36740 * 17 15 14 35 35 H 1.09000 * 109.46837 * 309.35508 * 17 15 14 36 36 H 0.96700 * 114.00394 * 180.02562 * 18 17 15 37 37 H 1.08990 * 109.46924 * 302.09062 * 21 19 15 38 38 H 1.08996 * 109.47125 * 62.09420 * 21 19 15 39 39 H 1.09004 * 109.47389 * 299.99328 * 22 21 19 40 40 H 1.08995 * 109.47647 * 60.00179 * 22 21 19 41 41 H 0.96702 * 113.99811 * 180.02562 * 23 22 21 42 42 H 1.09002 * 110.41176 * 40.25880 * 24 13 12 43 43 H 1.09002 * 110.41204 * 277.93787 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1042 1.6964 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0005 13 7 2.6365 -7.6833 -0.0018 14 6 2.1034 -8.0580 1.3366 15 6 2.1161 -9.6018 1.3432 16 1 1.1408 -9.9896 1.0492 17 6 2.5013 -10.1241 2.7287 18 8 1.4459 -9.8490 3.6520 19 6 3.1855 -9.9983 0.3047 20 1 3.9849 -10.5651 0.7820 21 6 2.5533 -10.8159 -0.8235 22 6 3.6386 -11.2425 -1.8140 23 8 3.0480 -12.0057 -2.8680 24 6 3.7291 -8.6608 -0.2421 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7312 0.8895 27 1 3.1246 -3.7313 -0.8905 28 1 1.3711 -5.4840 -0.8914 29 1 1.3706 -5.4846 0.8886 30 1 3.7595 -6.1478 0.8898 31 1 3.7608 -6.1474 -0.8901 32 1 1.0862 -7.6856 1.4582 33 1 2.7483 -7.6692 2.1247 34 1 2.6683 -11.2001 2.6779 35 1 3.4139 -9.6302 3.0624 36 1 1.6222 -10.1529 4.5529 37 1 2.0741 -11.7013 -0.4059 38 1 1.8091 -10.2090 -1.3391 39 1 4.1178 -10.3571 -2.2317 40 1 4.3828 -11.8495 -1.2985 41 1 3.6792 -12.3106 -3.5342 42 1 4.6284 -8.3663 0.2990 43 1 3.9380 -8.7429 -1.3087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308165023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:06 Heat of formation + Delta-G solvation = -120.227077 kcal Electronic energy + Delta-G solvation = -20740.044361 eV Core-core repulsion = 17524.430393 eV Total energy + Delta-G solvation = -3215.613968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90009 -37.23960 -36.84235 -34.81381 -32.41015 -32.09265 -30.99089 -27.63098 -26.27309 -25.51638 -24.59986 -22.70744 -21.10072 -20.45052 -20.11316 -17.91144 -17.42046 -17.29200 -16.19863 -15.83244 -15.44874 -15.24707 -14.77546 -14.39106 -14.33950 -14.06095 -13.83011 -13.51068 -13.05366 -12.81508 -12.76504 -12.14241 -12.11327 -11.70264 -11.54409 -11.36149 -11.21071 -11.03872 -11.01653 -10.99117 -10.79500 -10.73005 -10.58583 -10.22949 -10.22193 -10.19097 -9.49164 -9.01790 -8.47776 -8.25113 -6.48072 -6.18895 -3.88850 3.23741 3.25234 3.29851 3.56814 3.67563 3.98981 4.05680 4.26031 4.34336 4.46944 4.74371 4.83606 4.90657 4.97870 5.08711 5.12207 5.16526 5.17822 5.25925 5.31723 5.39612 5.40623 5.45935 5.51918 5.60374 5.77900 5.81346 5.85432 5.91092 5.96492 6.02946 6.11358 6.16212 6.39455 6.62939 6.79183 6.86828 7.07522 7.31364 7.35175 7.63487 8.39907 9.26919 10.89261 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.002744 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.233503 B =10200.613856 C =11002.562777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.071 0.929 9 S -0.131 6.131 10 C -0.112 4.112 11 C -0.091 4.091 12 C 0.050 3.950 13 N -0.508 5.508 14 C 0.043 3.957 15 C -0.088 4.088 16 H 0.091 0.909 17 C 0.084 3.916 18 O -0.569 6.569 19 C -0.081 4.081 20 H 0.076 0.924 21 C -0.108 4.108 22 C 0.074 3.926 23 O -0.575 6.575 24 C 0.031 3.969 25 H 0.267 0.733 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.378 0.622 42 H 0.043 0.957 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -24.607 2.039 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.097 5.903 10 C -0.262 4.262 11 C -0.129 4.129 12 C -0.079 4.079 13 N -0.232 5.232 14 C -0.084 4.084 15 C -0.107 4.107 16 H 0.109 0.891 17 C 0.006 3.994 18 O -0.374 6.374 19 C -0.100 4.100 20 H 0.095 0.905 21 C -0.146 4.146 22 C -0.004 4.004 23 O -0.380 6.380 24 C -0.097 4.097 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.061 0.939 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.228 -24.290 1.426 25.383 hybrid contribution 3.452 1.073 0.863 3.716 sum 10.680 -23.217 2.289 25.658 Atomic orbital electron populations 1.70018 1.05904 1.27386 1.47229 1.25014 0.95077 0.99048 0.94676 0.86231 0.79233 0.81291 0.78796 1.19956 1.20817 1.19993 1.22655 0.94464 0.90898 1.58480 0.91085 1.84660 1.09546 0.99275 1.96828 1.23237 1.02816 0.97540 1.02575 1.21200 0.96861 0.91656 1.03221 1.22345 0.97258 0.87692 1.00640 1.65478 1.28002 1.02292 1.27397 1.23196 1.01687 0.93610 0.89945 1.21948 1.00160 0.96137 0.92503 0.89070 1.22284 0.89470 0.98287 0.89366 1.86529 1.43926 1.84477 1.22507 1.21790 0.97240 0.95886 0.95096 0.90527 1.21511 0.98243 0.99857 0.94988 1.22276 0.95409 0.94110 0.88557 1.86491 1.39440 1.73793 1.38311 1.23256 0.93416 0.91591 1.01433 0.92274 0.92458 0.92219 0.90773 0.91730 0.94726 0.90942 0.89424 0.93679 0.93617 0.93762 0.77484 0.91306 0.89930 0.93301 0.94036 0.77518 0.93905 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 10 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 11 C -0.09 -1.57 5.33 -26.73 -0.14 -1.71 16 12 C 0.05 0.70 4.83 -3.83 -0.02 0.69 16 13 N -0.51 -6.44 5.35 -229.71 -1.23 -7.67 16 14 C 0.04 0.53 5.38 -2.01 -0.01 0.52 16 15 C -0.09 -0.87 2.98 -89.24 -0.27 -1.13 16 16 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 17 C 0.08 0.69 6.15 37.16 0.23 0.91 16 18 O -0.57 -5.33 13.55 -35.23 -0.48 -5.81 16 19 C -0.08 -0.68 2.74 -89.24 -0.24 -0.92 16 20 H 0.08 0.51 7.71 -51.93 -0.40 0.11 16 21 C -0.11 -0.96 4.84 -26.73 -0.13 -1.08 16 22 C 0.07 0.57 6.88 37.16 0.26 0.82 16 23 O -0.58 -5.05 13.66 -35.23 -0.48 -5.53 16 24 C 0.03 0.31 5.84 -2.18 -0.01 0.29 16 25 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.15 7.49 -51.93 -0.39 0.76 16 30 H 0.03 0.48 7.78 -51.93 -0.40 0.07 16 31 H 0.07 0.98 8.08 -51.92 -0.42 0.56 16 32 H 0.09 1.21 7.87 -51.93 -0.41 0.80 16 33 H 0.04 0.56 7.37 -51.93 -0.38 0.17 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.04 0.33 7.98 -51.93 -0.41 -0.08 16 36 H 0.38 1.79 9.12 45.56 0.42 2.21 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.35 6.47 -51.93 -0.34 0.02 16 40 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.38 1.56 9.12 45.56 0.42 1.98 16 42 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 43 H 0.08 0.79 6.20 -51.93 -0.32 0.47 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -34.52 357.71 -9.29 -43.81 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.96 Total: 1.20 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 0.07 Total: -16.64 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: -0.49 Total: -33.40 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.96 Total: -11.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.52 -9.29 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308165023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.416 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds