Wall clock time and date at job start Tue Mar 31 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48493 * 109.47404 * 240.00849 * 3 2 1 5 5 H 1.48506 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47146 * 120.00644 * 3 2 1 7 7 C 1.38797 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00152 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99721 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46851 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47109 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.48856 * 111.13147 * 285.32028 * 13 12 11 15 15 C 1.54382 * 104.63073 * 201.00447 * 14 13 12 16 16 H 1.08997 * 110.32536 * 264.95830 * 15 14 13 17 17 C 1.53000 * 110.32322 * 142.75131 * 15 14 13 18 18 O 1.42893 * 109.47529 * 69.36192 * 17 15 14 19 19 C 1.54257 * 105.06052 * 23.85208 * 15 14 13 20 20 H 1.09002 * 110.32308 * 118.90057 * 19 15 14 21 21 C 1.53005 * 110.32310 * 241.10353 * 19 15 14 22 22 C 1.53000 * 109.46716 * 182.09179 * 21 19 15 23 23 O 1.42905 * 109.46742 * 180.02562 * 22 21 19 24 24 C 1.48562 * 111.00344 * 169.99909 * 13 12 11 25 25 H 0.96995 * 119.99936 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46880 * 60.00091 * 10 9 7 27 27 H 1.08998 * 109.47139 * 299.99602 * 10 9 7 28 28 H 1.08999 * 109.47426 * 60.00276 * 11 10 9 29 29 H 1.08999 * 109.47090 * 300.00124 * 11 10 9 30 30 H 1.08996 * 109.47570 * 59.99700 * 12 11 10 31 31 H 1.09009 * 109.47170 * 299.99902 * 12 11 10 32 32 H 1.09003 * 110.39541 * 82.21242 * 14 13 12 33 33 H 1.08998 * 110.39292 * 319.79096 * 14 13 12 34 34 H 1.09007 * 109.47109 * 189.36740 * 17 15 14 35 35 H 1.09000 * 109.46837 * 309.35508 * 17 15 14 36 36 H 0.96700 * 114.00394 * 180.02562 * 18 17 15 37 37 H 1.08990 * 109.46924 * 302.09062 * 21 19 15 38 38 H 1.08996 * 109.47125 * 62.09420 * 21 19 15 39 39 H 1.09004 * 109.47389 * 299.99328 * 22 21 19 40 40 H 1.08995 * 109.47647 * 60.00179 * 22 21 19 41 41 H 0.96702 * 113.99811 * 180.02562 * 23 22 21 42 42 H 1.09002 * 110.41176 * 40.25880 * 24 13 12 43 43 H 1.09002 * 110.41204 * 277.93787 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1042 1.6964 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0005 13 7 2.6365 -7.6833 -0.0018 14 6 2.1034 -8.0580 1.3366 15 6 2.1161 -9.6018 1.3432 16 1 1.1408 -9.9896 1.0492 17 6 2.5013 -10.1241 2.7287 18 8 1.4459 -9.8490 3.6520 19 6 3.1855 -9.9983 0.3047 20 1 3.9849 -10.5651 0.7820 21 6 2.5533 -10.8159 -0.8235 22 6 3.6386 -11.2425 -1.8140 23 8 3.0480 -12.0057 -2.8680 24 6 3.7291 -8.6608 -0.2421 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7312 0.8895 27 1 3.1246 -3.7313 -0.8905 28 1 1.3711 -5.4840 -0.8914 29 1 1.3706 -5.4846 0.8886 30 1 3.7595 -6.1478 0.8898 31 1 3.7608 -6.1474 -0.8901 32 1 1.0862 -7.6856 1.4582 33 1 2.7483 -7.6692 2.1247 34 1 2.6683 -11.2001 2.6779 35 1 3.4139 -9.6302 3.0624 36 1 1.6222 -10.1529 4.5529 37 1 2.0741 -11.7013 -0.4059 38 1 1.8091 -10.2090 -1.3391 39 1 4.1178 -10.3571 -2.2317 40 1 4.3828 -11.8495 -1.2985 41 1 3.6792 -12.3106 -3.5342 42 1 4.6284 -8.3663 0.2990 43 1 3.9380 -8.7429 -1.3087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308165023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:05 Heat of formation + Delta-G solvation = -148.589138 kcal Electronic energy + Delta-G solvation = -20741.274232 eV Core-core repulsion = 17524.430393 eV Total energy + Delta-G solvation = -3216.843839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72560 -37.86228 -37.60221 -35.86211 -34.61238 -33.19964 -31.83718 -28.52261 -27.84335 -27.13282 -25.46390 -23.71952 -22.21141 -21.40770 -20.87171 -19.55874 -18.53307 -17.93439 -17.06754 -16.90326 -16.69237 -16.51041 -16.20247 -15.81891 -15.35810 -15.02322 -14.90253 -14.61847 -14.16865 -13.96840 -13.85260 -13.39546 -13.22951 -12.98615 -12.86103 -12.80165 -12.65740 -12.42841 -12.29494 -12.09543 -11.81806 -11.68410 -11.61497 -11.49099 -11.31126 -11.13926 -10.85317 -10.76816 -10.33130 -9.44424 -8.68588 -8.37548 -6.14882 1.30344 1.40592 1.47402 1.73030 2.27929 2.94189 2.96313 3.15222 3.32280 3.42270 3.59837 3.76141 3.94578 4.11204 4.18269 4.21331 4.25147 4.33803 4.38726 4.44697 4.46014 4.54339 4.57337 4.58524 4.67579 4.69210 4.74018 4.78499 4.84827 5.04107 5.06252 5.12308 5.21633 5.23503 5.29585 5.38313 5.39652 5.90395 6.04457 6.17269 6.93504 6.94470 7.03871 8.71866 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.002744 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.233503 B =10200.613856 C =11002.562777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.013 3.987 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.203 6.203 10 C -0.085 4.085 11 C -0.079 4.079 12 C 0.062 3.938 13 N -0.524 5.524 14 C 0.043 3.957 15 C -0.087 4.087 16 H 0.074 0.926 17 C 0.086 3.914 18 O -0.596 6.596 19 C -0.069 4.069 20 H 0.106 0.894 21 C -0.106 4.106 22 C 0.074 3.926 23 O -0.600 6.600 24 C 0.031 3.969 25 H 0.272 0.728 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.056 0.944 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.401 -25.570 2.299 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.025 5.975 10 C -0.235 4.235 11 C -0.118 4.118 12 C -0.068 4.068 13 N -0.248 5.248 14 C -0.085 4.085 15 C -0.106 4.106 16 H 0.092 0.908 17 C 0.008 3.992 18 O -0.405 6.405 19 C -0.088 4.088 20 H 0.124 0.876 21 C -0.144 4.144 22 C -0.003 4.003 23 O -0.409 6.409 24 C -0.097 4.097 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.246 0.754 42 H 0.074 0.926 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.900 -25.284 1.688 27.205 hybrid contribution 2.590 1.269 0.774 2.987 sum 12.490 -24.015 2.462 27.180 Atomic orbital electron populations 1.70163 1.07777 1.28644 1.47919 1.26119 0.96061 1.03245 0.93717 0.85037 0.77906 0.75877 0.79407 1.18807 1.19942 1.18842 1.23008 0.94740 0.91872 1.58996 0.90799 1.84732 1.14310 1.01371 1.97044 1.23145 1.00045 0.97363 1.02927 1.21072 0.98044 0.90533 1.02158 1.22141 0.95456 0.87780 1.01460 1.65400 1.29599 1.02071 1.27768 1.23146 1.00078 0.95528 0.89751 1.21928 1.00082 0.94189 0.94427 0.90764 1.22315 0.89308 0.99600 0.87999 1.86482 1.44884 1.84992 1.24094 1.21738 0.97294 0.95326 0.94419 0.87589 1.21457 0.98189 0.99375 0.95352 1.22304 0.95076 0.94656 0.88284 1.86439 1.41123 1.74053 1.39264 1.23349 0.92896 0.91304 1.02126 0.91944 0.91989 0.91659 0.91970 0.92729 0.93984 0.89949 0.92164 0.93680 0.91378 0.92698 0.75336 0.91335 0.92828 0.92893 0.91758 0.75370 0.92557 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.54 -31.87 9.50 67.95 0.65 -31.23 16 8 H 0.07 4.18 7.80 -2.91 -0.02 4.15 16 9 S -0.20 -11.28 21.44 -56.49 -1.21 -12.49 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 11 C -0.08 -2.77 5.33 30.59 0.16 -2.61 16 12 C 0.06 1.66 4.83 86.30 0.42 2.08 16 13 N -0.52 -12.88 5.35 -880.67 -4.71 -17.59 16 14 C 0.04 1.04 5.38 86.39 0.46 1.50 16 15 C -0.09 -1.61 2.98 -9.90 -0.03 -1.64 16 16 H 0.07 1.62 7.71 -2.39 -0.02 1.60 16 17 C 0.09 1.21 6.15 71.98 0.44 1.65 16 18 O -0.60 -10.50 13.55 -148.98 -2.02 -12.52 16 19 C -0.07 -0.99 2.74 -9.90 -0.03 -1.02 16 20 H 0.11 0.97 7.71 -2.39 -0.02 0.95 16 21 C -0.11 -1.72 4.84 30.60 0.15 -1.58 16 22 C 0.07 0.96 6.88 71.98 0.49 1.46 16 23 O -0.60 -9.61 13.66 -148.98 -2.04 -11.64 16 24 C 0.03 0.53 5.84 86.45 0.50 1.04 16 25 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 27 H 0.06 2.65 8.14 -2.40 -0.02 2.63 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 2.01 7.49 -2.39 -0.02 1.99 16 30 H 0.04 1.08 7.78 -2.39 -0.02 1.06 16 31 H 0.08 2.07 8.08 -2.38 -0.02 2.05 16 32 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 33 H 0.04 1.08 7.37 -2.39 -0.02 1.06 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.05 0.67 7.98 -2.39 -0.02 0.65 16 36 H 0.40 3.19 9.12 -74.06 -0.68 2.52 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 0.64 6.47 -2.39 -0.02 0.62 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.40 2.58 9.12 -74.06 -0.68 1.90 16 42 H 0.06 0.86 8.00 -2.39 -0.02 0.84 16 43 H 0.09 1.47 6.20 -2.39 -0.01 1.46 16 Total: -1.00 -75.84 357.71 -3.92 -79.76 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.36 Total: 16.07 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.10 Total: -32.27 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -4.42 Total: -73.50 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -4.05 Total: -24.16 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -11.28 SS G_CDS: -1.21 Total: -12.49 kcal Total: -75.84 -3.92 -79.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308165023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.833 kcal (2) G-P(sol) polarization free energy of solvation -75.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds