Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99904 * 2 1 4 4 H 1.48503 * 109.47210 * 270.00066 * 3 2 1 5 5 H 1.48498 * 109.47207 * 30.00512 * 3 2 1 6 6 H 1.48504 * 109.46582 * 149.99990 * 3 2 1 7 7 C 1.38797 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00273 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99935 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47293 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47357 * 179.97438 * 12 11 10 14 14 C 1.48551 * 111.00202 * 170.00092 * 13 12 11 15 15 C 1.54374 * 104.59541 * 200.95973 * 14 13 12 16 16 H 1.08992 * 110.32801 * 264.95820 * 15 14 13 17 17 C 1.53008 * 110.40872 * 142.79278 * 15 14 13 18 18 C 1.53004 * 109.46594 * 69.31524 * 17 15 14 19 19 O 1.42906 * 109.46795 * 180.02562 * 18 17 15 20 20 C 1.54259 * 105.06107 * 23.85769 * 15 14 13 21 21 H 1.09002 * 110.32223 * 241.10101 * 20 15 14 22 22 C 1.53001 * 110.32668 * 118.99339 * 20 15 14 23 23 O 1.42897 * 109.46997 * 176.42666 * 22 20 15 24 24 C 1.48561 * 110.99547 * 54.58150 * 13 12 11 25 25 H 0.97007 * 119.99947 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47375 * 59.99887 * 10 9 7 27 27 H 1.09003 * 109.47318 * 299.99725 * 10 9 7 28 28 H 1.08998 * 109.46948 * 60.00062 * 11 10 9 29 29 H 1.09003 * 109.47048 * 300.00298 * 11 10 9 30 30 H 1.09006 * 109.47045 * 60.00495 * 12 11 10 31 31 H 1.08990 * 109.47419 * 300.00551 * 12 11 10 32 32 H 1.09004 * 110.40983 * 82.18271 * 14 13 12 33 33 H 1.09000 * 110.41267 * 319.74422 * 14 13 12 34 34 H 1.08992 * 109.47011 * 189.31081 * 17 15 14 35 35 H 1.08997 * 109.47032 * 309.31770 * 17 15 14 36 36 H 1.08994 * 109.47570 * 299.99669 * 18 17 15 37 37 H 1.08997 * 109.47230 * 60.00367 * 18 17 15 38 38 H 0.96699 * 114.00023 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47002 * 296.42688 * 22 20 15 40 40 H 1.09004 * 109.46984 * 56.42794 * 22 20 15 41 41 H 0.96706 * 113.99636 * 180.02562 * 23 22 20 42 42 H 1.09005 * 110.41198 * 40.26544 * 24 13 12 43 43 H 1.08998 * 110.41368 * 277.82066 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5957 -3.2363 -0.0002 12 6 5.8614 -4.7431 0.0002 13 7 7.3104 -4.9849 -0.0006 14 6 7.6109 -6.4196 0.2406 15 6 9.0708 -6.4323 0.7423 16 1 9.7543 -6.6172 -0.0863 17 6 9.2528 -7.4954 1.8276 18 6 9.1386 -8.8871 1.2022 19 8 9.3080 -9.8801 2.2159 20 6 9.3060 -5.0242 1.3269 21 1 10.1050 -4.5180 0.7851 22 6 9.6500 -5.1172 2.8148 23 8 9.9453 -3.8127 3.3178 24 6 7.9684 -4.2792 1.1291 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8904 27 1 3.6433 -3.4318 0.8896 28 1 6.0387 -2.7894 0.8898 29 1 6.0386 -2.7891 -0.8902 30 1 5.4184 -5.1904 -0.8897 31 1 5.4185 -5.1899 0.8902 32 1 7.5222 -6.9874 -0.6856 33 1 6.9438 -6.8250 1.0014 34 1 10.2353 -7.3824 2.2856 35 1 8.4812 -7.3742 2.5878 36 1 8.1561 -9.0002 0.7441 37 1 9.9101 -9.0083 0.4419 38 1 9.2480 -10.7887 1.8904 39 1 8.8016 -5.5329 3.3586 40 1 10.5182 -5.7628 2.9474 41 1 10.1731 -3.7958 4.2575 42 1 7.3573 -4.3497 2.0290 43 1 8.1489 -3.2355 0.8719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308165024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -115.937021 kcal Electronic energy + Delta-G solvation = -20918.970153 eV Core-core repulsion = 17703.542216 eV Total energy + Delta-G solvation = -3215.427937 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11231 -37.33094 -36.88704 -34.99932 -32.42551 -32.28403 -30.84971 -27.84923 -26.34234 -25.66662 -24.40435 -23.00495 -21.83776 -20.59825 -19.25811 -17.83153 -17.53998 -17.41531 -16.46100 -15.69677 -15.68911 -15.42664 -14.94964 -14.63206 -14.24406 -14.19800 -13.96384 -13.48146 -13.08054 -12.83356 -12.68232 -12.40058 -12.22067 -11.85562 -11.83627 -11.61858 -11.32856 -11.13669 -11.04527 -11.02782 -10.91694 -10.65350 -10.43423 -10.39665 -10.10836 -10.03109 -9.74508 -8.98511 -8.54376 -8.53316 -6.91696 -6.26560 -3.98480 3.02725 3.32278 3.47969 3.56706 3.67729 3.82029 4.04474 4.23189 4.33830 4.45310 4.66915 4.71805 4.81682 4.86009 4.95351 5.04236 5.12013 5.12284 5.13850 5.22601 5.26575 5.35739 5.37643 5.40990 5.54064 5.56292 5.65078 5.73898 5.78685 5.87595 5.94016 6.01914 6.08287 6.23835 6.49628 6.64390 6.76806 6.98493 7.18911 7.37886 7.97291 8.45977 9.19521 10.82949 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.002850 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.670092 B = 9822.671156 C =10491.796305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.501 4.501 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.081 4.081 11 C -0.101 4.101 12 C 0.050 3.950 13 N -0.511 5.511 14 C 0.034 3.966 15 C -0.082 4.082 16 H 0.086 0.914 17 C -0.120 4.120 18 C 0.074 3.926 19 O -0.577 6.577 20 C -0.087 4.087 21 H 0.089 0.911 22 C 0.080 3.920 23 O -0.572 6.572 24 C 0.043 3.957 25 H 0.270 0.730 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.380 0.620 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.379 0.621 42 H 0.047 0.953 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.676 -17.480 3.913 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.649 4.649 8 H 0.105 0.895 9 S 0.013 5.987 10 C -0.230 4.230 11 C -0.139 4.139 12 C -0.080 4.080 13 N -0.234 5.234 14 C -0.094 4.094 15 C -0.101 4.101 16 H 0.105 0.895 17 C -0.157 4.157 18 C -0.004 4.004 19 O -0.383 6.383 20 C -0.106 4.106 21 H 0.107 0.893 22 C 0.002 3.998 23 O -0.377 6.377 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.227 0.773 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.065 0.935 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.328 -15.606 3.134 27.421 hybrid contribution -1.192 -1.201 0.915 1.924 sum 21.136 -16.807 4.050 27.306 Atomic orbital electron populations 1.69943 1.05929 1.27683 1.48423 1.24801 0.94516 0.99031 0.93360 0.86665 0.81758 0.83167 0.79730 1.19350 1.20137 1.16138 1.22130 0.87144 0.97383 1.58249 0.89460 1.84174 1.11584 1.05428 1.97517 1.23011 0.97299 0.99170 1.03566 1.21384 0.95078 0.94141 1.03324 1.22342 0.87190 0.97438 1.01013 1.65453 1.10779 1.05792 1.41409 1.23249 0.94900 0.90960 1.00307 1.21835 0.97409 0.93288 0.97591 0.89529 1.21766 1.03335 0.92195 0.98434 1.22241 0.99727 0.88443 0.89969 1.86463 1.95976 1.18420 1.37432 1.21884 0.98957 0.95433 0.94357 0.89307 1.22455 0.98812 0.84289 0.94251 1.86509 1.91966 1.29412 1.29794 1.23117 0.93247 0.99425 0.92640 0.92001 0.91391 0.91646 0.91461 0.90630 0.90430 0.94646 0.90059 0.93563 0.90560 0.90907 0.93402 0.93531 0.77332 0.93494 0.93175 0.77456 0.93505 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.12 13.97 55.49 0.78 -26.35 16 2 C 0.09 2.70 5.50 -17.43 -0.10 2.61 16 3 Si 0.86 21.91 27.74 -169.99 -4.72 17.20 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.50 -14.80 10.04 30.94 0.31 -14.49 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -5.37 19.41 -107.50 -2.09 -7.45 16 10 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 11 C -0.10 -1.62 4.93 -26.73 -0.13 -1.75 16 12 C 0.05 0.67 5.06 -3.82 -0.02 0.65 16 13 N -0.51 -6.18 5.49 -229.98 -1.26 -7.45 16 14 C 0.03 0.32 5.31 -2.19 -0.01 0.31 16 15 C -0.08 -0.66 3.06 -89.24 -0.27 -0.93 16 16 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 17 C -0.12 -0.87 3.80 -26.72 -0.10 -0.97 16 18 C 0.07 0.49 6.92 37.16 0.26 0.74 16 19 O -0.58 -4.32 13.66 -35.23 -0.48 -4.80 16 20 C -0.09 -0.84 3.33 -89.24 -0.30 -1.13 16 21 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.08 0.68 5.18 37.16 0.19 0.87 16 23 O -0.57 -5.50 13.52 -35.23 -0.48 -5.98 16 24 C 0.04 0.52 4.53 -2.18 -0.01 0.51 16 25 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 27 H 0.06 1.30 8.14 -51.91 -0.42 0.88 16 28 H 0.07 1.10 6.84 -51.93 -0.36 0.75 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.47 7.88 -51.93 -0.41 0.06 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.45 7.43 -51.93 -0.39 0.06 16 34 H 0.08 0.54 6.39 -51.93 -0.33 0.21 16 35 H 0.07 0.60 7.04 -51.93 -0.37 0.23 16 36 H 0.05 0.29 7.59 -51.93 -0.39 -0.10 16 37 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.38 1.16 9.12 45.56 0.42 1.58 16 39 H 0.05 0.39 7.03 -51.93 -0.37 0.03 16 40 H 0.05 0.35 6.45 -51.93 -0.33 0.02 16 41 H 0.38 1.97 9.12 45.56 0.42 2.39 16 42 H 0.05 0.59 7.64 -51.93 -0.40 0.19 16 43 H 0.09 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -34.14 349.73 -8.81 -42.95 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.86 Total: 1.61 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 0.03 Total: -15.00 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: -0.49 Total: -33.79 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.96 Total: -10.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.14 -8.81 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308165024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.988 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds