Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99904 * 2 1 4 4 H 1.48503 * 109.47210 * 270.00066 * 3 2 1 5 5 H 1.48498 * 109.47207 * 30.00512 * 3 2 1 6 6 H 1.48504 * 109.46582 * 149.99990 * 3 2 1 7 7 C 1.38797 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00273 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99935 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47293 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47357 * 179.97438 * 12 11 10 14 14 C 1.48551 * 111.00202 * 170.00092 * 13 12 11 15 15 C 1.54374 * 104.59541 * 200.95973 * 14 13 12 16 16 H 1.08992 * 110.32801 * 264.95820 * 15 14 13 17 17 C 1.53008 * 110.40872 * 142.79278 * 15 14 13 18 18 C 1.53004 * 109.46594 * 69.31524 * 17 15 14 19 19 O 1.42906 * 109.46795 * 180.02562 * 18 17 15 20 20 C 1.54259 * 105.06107 * 23.85769 * 15 14 13 21 21 H 1.09002 * 110.32223 * 241.10101 * 20 15 14 22 22 C 1.53001 * 110.32668 * 118.99339 * 20 15 14 23 23 O 1.42897 * 109.46997 * 176.42666 * 22 20 15 24 24 C 1.48561 * 110.99547 * 54.58150 * 13 12 11 25 25 H 0.97007 * 119.99947 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47375 * 59.99887 * 10 9 7 27 27 H 1.09003 * 109.47318 * 299.99725 * 10 9 7 28 28 H 1.08998 * 109.46948 * 60.00062 * 11 10 9 29 29 H 1.09003 * 109.47048 * 300.00298 * 11 10 9 30 30 H 1.09006 * 109.47045 * 60.00495 * 12 11 10 31 31 H 1.08990 * 109.47419 * 300.00551 * 12 11 10 32 32 H 1.09004 * 110.40983 * 82.18271 * 14 13 12 33 33 H 1.09000 * 110.41267 * 319.74422 * 14 13 12 34 34 H 1.08992 * 109.47011 * 189.31081 * 17 15 14 35 35 H 1.08997 * 109.47032 * 309.31770 * 17 15 14 36 36 H 1.08994 * 109.47570 * 299.99669 * 18 17 15 37 37 H 1.08997 * 109.47230 * 60.00367 * 18 17 15 38 38 H 0.96699 * 114.00023 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47002 * 296.42688 * 22 20 15 40 40 H 1.09004 * 109.46984 * 56.42794 * 22 20 15 41 41 H 0.96706 * 113.99636 * 180.02562 * 23 22 20 42 42 H 1.09005 * 110.41198 * 40.26544 * 24 13 12 43 43 H 1.08998 * 110.41368 * 277.82066 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5957 -3.2363 -0.0002 12 6 5.8614 -4.7431 0.0002 13 7 7.3104 -4.9849 -0.0006 14 6 7.6109 -6.4196 0.2406 15 6 9.0708 -6.4323 0.7423 16 1 9.7543 -6.6172 -0.0863 17 6 9.2528 -7.4954 1.8276 18 6 9.1386 -8.8871 1.2022 19 8 9.3080 -9.8801 2.2159 20 6 9.3060 -5.0242 1.3269 21 1 10.1050 -4.5180 0.7851 22 6 9.6500 -5.1172 2.8148 23 8 9.9453 -3.8127 3.3178 24 6 7.9684 -4.2792 1.1291 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8904 27 1 3.6433 -3.4318 0.8896 28 1 6.0387 -2.7894 0.8898 29 1 6.0386 -2.7891 -0.8902 30 1 5.4184 -5.1904 -0.8897 31 1 5.4185 -5.1899 0.8902 32 1 7.5222 -6.9874 -0.6856 33 1 6.9438 -6.8250 1.0014 34 1 10.2353 -7.3824 2.2856 35 1 8.4812 -7.3742 2.5878 36 1 8.1561 -9.0002 0.7441 37 1 9.9101 -9.0083 0.4419 38 1 9.2480 -10.7887 1.8904 39 1 8.8016 -5.5329 3.3586 40 1 10.5182 -5.7628 2.9474 41 1 10.1731 -3.7958 4.2575 42 1 7.3573 -4.3497 2.0290 43 1 8.1489 -3.2355 0.8719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308165024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -144.431399 kcal Electronic energy + Delta-G solvation = -20920.205762 eV Core-core repulsion = 17703.542216 eV Total energy + Delta-G solvation = -3216.663546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89762 -37.91663 -37.62577 -35.93622 -34.70266 -33.35448 -31.62089 -28.73983 -27.95268 -27.19759 -25.37441 -23.71884 -22.84424 -21.64954 -20.02595 -19.56351 -18.48798 -18.06987 -17.20033 -17.12419 -16.78679 -16.58356 -16.24804 -15.74267 -15.55161 -14.95160 -14.88562 -14.85549 -14.40260 -14.07213 -13.80796 -13.46597 -13.26352 -13.10759 -13.01985 -12.95574 -12.66057 -12.53453 -12.19760 -12.06655 -11.90422 -11.75894 -11.58436 -11.50607 -11.32147 -11.17910 -10.94725 -10.65389 -10.58479 -9.49400 -9.01602 -8.53625 -6.25195 1.10671 1.30879 1.46799 1.71899 2.23621 2.66507 2.84331 2.91913 3.22524 3.32978 3.53006 3.74496 3.93676 4.05514 4.12057 4.14445 4.22801 4.31159 4.32902 4.38668 4.43811 4.54061 4.54706 4.57322 4.65115 4.66413 4.72493 4.77355 4.85133 4.93855 5.05660 5.09481 5.18070 5.20876 5.22668 5.36597 5.68190 5.83881 6.00161 6.08188 6.90228 6.90483 6.91383 8.59512 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.002850 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.670092 B = 9822.671156 C =10491.796305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.038 3.962 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.231 1.231 7 C -0.522 4.522 8 H 0.051 0.949 9 S -0.222 6.222 10 C -0.068 4.068 11 C -0.087 4.087 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.033 3.967 15 C -0.070 4.070 16 H 0.099 0.901 17 C -0.115 4.115 18 C 0.073 3.927 19 O -0.599 6.599 20 C -0.086 4.086 21 H 0.083 0.917 22 C 0.082 3.918 23 O -0.595 6.595 24 C 0.043 3.957 25 H 0.277 0.723 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.397 0.603 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.037 0.963 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.870 -18.197 3.890 30.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.167 4.167 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.154 1.154 7 C -0.669 4.669 8 H 0.069 0.931 9 S 0.006 5.994 10 C -0.217 4.217 11 C -0.126 4.126 12 C -0.072 4.072 13 N -0.242 5.242 14 C -0.094 4.094 15 C -0.090 4.090 16 H 0.117 0.883 17 C -0.153 4.153 18 C -0.005 4.005 19 O -0.407 6.407 20 C -0.105 4.105 21 H 0.102 0.898 22 C 0.004 3.996 23 O -0.403 6.403 24 C -0.085 4.085 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.247 0.753 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.245 0.755 42 H 0.055 0.945 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.527 -16.351 3.121 29.643 hybrid contribution -1.881 -1.110 0.933 2.375 sum 22.646 -17.461 4.054 28.882 Atomic orbital electron populations 1.70038 1.07609 1.29138 1.49227 1.25781 0.95436 1.02759 0.92726 0.85712 0.80709 0.78641 0.80277 1.18526 1.18598 1.15407 1.22327 0.89968 0.96277 1.58350 0.93101 1.83899 1.07663 1.10297 1.97567 1.23063 1.00024 0.95091 1.03522 1.21251 0.91899 0.96446 1.03007 1.22186 0.88485 0.95000 1.01495 1.65439 1.09540 1.07641 1.41618 1.23344 0.95814 0.89218 1.01065 1.21760 0.96598 0.92528 0.98068 0.88262 1.21696 1.03170 0.92541 0.97860 1.22263 1.00464 0.87807 0.89936 1.86410 1.96048 1.19872 1.38400 1.21880 0.97272 0.96014 0.95376 0.89823 1.22468 0.99576 0.84163 0.93375 1.86462 1.92107 1.30209 1.31542 1.23070 0.94527 0.98858 0.92080 0.91353 0.91324 0.91788 0.91755 0.90943 0.89732 0.94425 0.88780 0.93588 0.90127 0.91970 0.93045 0.92131 0.75306 0.93511 0.91328 0.75463 0.94475 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.55 13.97 21.65 0.30 -57.25 16 2 C 0.04 2.25 5.50 84.86 0.47 2.72 16 3 Si 0.93 45.03 27.74 68.60 1.90 46.94 16 4 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.23 -10.88 6.74 99.48 0.67 -10.21 16 7 C -0.52 -31.43 10.04 67.95 0.68 -30.75 16 8 H 0.05 3.32 8.03 -2.91 -0.02 3.30 16 9 S -0.22 -11.05 19.41 -56.49 -1.10 -12.15 16 10 C -0.07 -2.68 5.67 71.98 0.41 -2.28 16 11 C -0.09 -2.74 4.93 30.59 0.15 -2.59 16 12 C 0.06 1.48 5.06 86.30 0.44 1.92 16 13 N -0.52 -11.79 5.49 -881.51 -4.84 -16.63 16 14 C 0.03 0.56 5.31 86.45 0.46 1.02 16 15 C -0.07 -0.97 3.06 -9.90 -0.03 -1.00 16 16 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 17 C -0.12 -1.41 3.80 30.60 0.12 -1.29 16 18 C 0.07 0.77 6.92 71.98 0.50 1.27 16 19 O -0.60 -7.69 13.66 -148.98 -2.04 -9.73 16 20 C -0.09 -1.53 3.33 -9.90 -0.03 -1.56 16 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 22 C 0.08 1.26 5.18 71.98 0.37 1.63 16 23 O -0.59 -10.77 13.52 -148.98 -2.01 -12.78 16 24 C 0.04 0.98 4.53 86.45 0.39 1.37 16 25 H 0.28 15.90 8.31 -92.70 -0.77 15.13 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.06 2.07 6.84 -2.39 -0.02 2.05 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.04 0.94 7.88 -2.39 -0.02 0.93 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 0.79 7.43 -2.39 -0.02 0.78 16 34 H 0.08 0.93 6.39 -2.39 -0.02 0.92 16 35 H 0.06 0.91 7.04 -2.39 -0.02 0.89 16 36 H 0.05 0.50 7.59 -2.39 -0.02 0.48 16 37 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.40 1.61 9.12 -74.06 -0.68 0.94 16 39 H 0.05 0.72 7.03 -2.39 -0.02 0.70 16 40 H 0.07 0.81 6.45 -2.39 -0.02 0.79 16 41 H 0.40 3.63 9.12 -74.05 -0.68 2.96 16 42 H 0.04 0.92 7.64 -2.38 -0.02 0.90 16 43 H 0.07 1.83 7.67 -2.39 -0.02 1.81 16 Total: -1.00 -73.34 349.73 -4.25 -77.58 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.39 Total: 13.55 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 3.92 Total: -29.53 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -4.54 Total: -73.88 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -4.05 Total: -22.51 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.94 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.10 Total: -12.15 kcal Total: -73.34 -4.25 -77.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308165024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.848 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds