Wall clock time and date at job start Tue Mar 31 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 115.55099 * 2 1 4 4 C 1.50704 * 109.47151 * 279.85857 * 3 2 1 5 5 O 1.21277 * 119.99765 * 354.88518 * 4 3 2 6 6 N 1.34774 * 119.99695 * 174.87977 * 4 3 2 7 7 C 1.46502 * 119.99690 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47002 * 180.02562 * 7 6 4 9 9 C 1.38325 * 119.96534 * 270.02036 * 8 7 6 10 10 C 1.38277 * 120.14052 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06982 * 359.76698 * 10 9 8 12 12 C 1.38856 * 119.92802 * 0.51379 * 11 10 9 13 13 O 1.35756 * 120.07119 * 179.74175 * 12 11 10 14 14 C 1.34827 * 116.99965 * 354.17921 * 13 12 11 15 15 H 1.08003 * 119.99547 * 3.43639 * 14 13 12 16 16 C 1.38656 * 120.00335 * 183.43637 * 14 13 12 17 17 N 1.31556 * 119.99382 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47510 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47020 * 120.00239 * 18 16 14 21 21 H 1.48501 * 109.47296 * 240.00096 * 18 16 14 22 22 C 1.38079 * 119.96899 * 90.00216 * 8 7 6 23 23 C 1.52995 * 117.51718 * 145.70678 * 2 1 3 24 24 C 1.52996 * 60.00269 * 107.47454 * 23 2 1 25 25 H 1.09001 * 109.46851 * 58.57061 * 1 2 3 26 26 H 1.08993 * 109.47238 * 178.57392 * 1 2 3 27 27 H 1.09000 * 109.46622 * 298.57769 * 1 2 3 28 28 H 1.08997 * 109.46705 * 159.86157 * 3 2 1 29 29 H 1.08997 * 109.46817 * 39.85567 * 3 2 1 30 30 H 0.96993 * 120.00098 * 0.02562 * 6 4 3 31 31 H 1.09005 * 109.46995 * 60.00572 * 7 6 4 32 32 H 1.08996 * 109.47636 * 300.00235 * 7 6 4 33 33 H 1.08007 * 119.93190 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.96824 * 180.02562 * 10 9 8 35 35 H 1.07994 * 120.03937 * 180.27283 * 11 10 9 36 36 H 0.97008 * 119.99774 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.03045 * 0.04642 * 22 8 7 38 38 H 1.09003 * 117.49814 * 214.96986 * 23 2 1 39 39 H 1.09004 * 117.50140 * 359.97438 * 23 2 1 40 40 H 1.09000 * 117.50354 * 252.50520 * 24 23 2 41 41 H 1.09007 * 117.49835 * 107.48643 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.1872 1.9385 -1.3999 5 8 1.7900 1.2592 -2.3227 6 7 2.6259 3.1926 -1.6261 7 6 2.6237 3.7350 -2.9870 8 6 3.1589 5.1436 -2.9672 9 6 2.2945 6.2086 -2.7888 10 6 2.7817 7.5026 -2.7695 11 6 4.1344 7.7351 -2.9236 12 6 5.0040 6.6685 -3.1087 13 8 6.3334 6.8941 -3.2657 14 6 6.7300 8.1798 -3.3530 15 1 6.0088 8.9760 -3.2418 16 6 8.0636 8.4797 -3.5854 17 7 8.9419 7.5097 -3.7213 18 14 8.6129 10.2609 -3.7070 19 1 7.4413 11.1541 -3.5202 20 1 9.6212 10.5410 -2.6533 21 1 9.2130 10.5038 -5.0434 22 6 4.5116 5.3698 -3.1268 23 6 2.2369 -1.1210 0.7645 24 6 2.2364 -1.1208 -0.7655 25 1 -0.3633 0.5359 -0.8769 26 1 -0.3633 -1.0273 -0.0256 27 1 -0.3632 0.4916 0.9025 28 1 3.2171 1.2919 0.3538 29 1 1.6349 2.0484 0.6586 30 1 2.9438 3.7357 -0.8881 31 1 1.6051 3.7384 -3.3752 32 1 3.2539 3.1163 -3.6259 33 1 1.2367 6.0292 -2.6643 34 1 2.1043 8.3320 -2.6296 35 1 4.5149 8.7456 -2.9040 36 1 9.8749 7.7195 -3.8842 37 1 5.1859 4.5379 -3.2665 38 1 3.1721 -0.8751 1.2676 39 1 1.6120 -1.8586 1.2681 40 1 1.6112 -1.8583 -1.2687 41 1 3.1713 -0.8747 -1.2691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320877741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:11 Heat of formation + Delta-G solvation = -25.775901 kcal Electronic energy + Delta-G solvation = -21752.914268 eV Core-core repulsion = 18405.952059 eV Total energy + Delta-G solvation = -3346.962209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00108 -39.12203 -37.72129 -36.71809 -34.42346 -32.35917 -31.16616 -29.73484 -29.08315 -28.22090 -25.79562 -24.98009 -22.53228 -21.74646 -20.98762 -20.70298 -19.15279 -17.85680 -17.20931 -16.64138 -16.00649 -15.64402 -15.25377 -14.97049 -14.70660 -14.42282 -14.15700 -13.80933 -13.63031 -13.47757 -12.94351 -12.85961 -12.51889 -12.42590 -12.32232 -11.93849 -11.69055 -11.61857 -11.42112 -11.33369 -10.96983 -10.83441 -10.71134 -10.47951 -10.42700 -9.98465 -9.60725 -9.43012 -8.94737 -8.91221 -8.25769 -7.35311 -6.51338 -4.10643 1.88723 2.24601 2.73414 3.07562 3.09744 3.15295 3.28152 3.80151 3.90681 4.46619 4.49003 4.61543 4.75269 4.83043 4.91193 5.04444 5.09907 5.26459 5.35113 5.37568 5.50984 5.52390 5.67233 5.72437 5.73914 5.82500 5.85330 5.87614 5.95501 6.03687 6.05872 6.12953 6.23164 6.51604 6.53794 6.79508 6.97619 7.16828 7.25169 7.33451 7.60967 7.69931 7.92874 8.32199 8.94163 9.62637 10.66536 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.002760 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.872460 B =10141.648988 C =10754.674497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.106 4.106 4 C 0.510 3.490 5 O -0.537 6.537 6 N -0.724 5.724 7 C 0.168 3.832 8 C -0.072 4.072 9 C -0.196 4.196 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.151 3.849 13 O -0.177 6.177 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.171 4.171 23 C -0.181 4.181 24 C -0.152 4.152 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.402 0.598 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.270 0.730 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 -9.384 8.209 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.296 3.704 5 O -0.414 6.414 6 N -0.376 5.376 7 C 0.046 3.954 8 C -0.073 4.073 9 C -0.215 4.215 10 C -0.094 4.094 11 C -0.246 4.246 12 C 0.097 3.903 13 O -0.080 6.080 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.191 4.191 23 C -0.218 4.218 24 C -0.189 4.189 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.237 0.763 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.008 -10.052 7.460 18.053 hybrid contribution 0.527 1.374 0.267 1.496 sum -12.481 -8.678 7.727 17.053 Atomic orbital electron populations 1.21277 0.91897 1.01825 1.01852 1.21028 0.94845 0.89542 1.05905 1.21220 1.02663 0.95970 0.94762 1.20619 0.77215 0.81293 0.91241 1.90688 1.46670 1.58625 1.45395 1.46186 1.65816 1.15028 1.10566 1.20122 1.01003 0.90921 0.83395 1.19282 0.92923 0.93572 1.01538 1.20477 0.98297 0.92360 1.10377 1.20746 0.94685 0.96089 0.97891 1.21243 0.93555 0.99723 1.10066 1.19317 0.85129 0.93066 0.92802 1.83978 1.16571 1.29435 1.78003 1.21378 0.93904 0.80498 1.51130 0.88971 1.25299 0.94743 1.00093 0.96376 1.70048 1.02939 1.31907 1.44659 0.85637 0.79092 0.80283 0.78353 1.19087 1.20106 1.20083 1.20083 0.94291 0.94919 1.09846 1.23171 1.02185 1.01118 0.95278 1.22865 1.02386 1.00493 0.93141 0.91739 0.92586 0.92535 0.88701 0.88626 0.76339 0.91076 0.91004 0.87534 0.87287 0.85455 0.91987 0.86437 0.88881 0.88868 0.88946 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.70 37.16 0.36 -0.67 16 2 C -0.11 -1.11 1.63 -154.51 -0.25 -1.36 16 3 C -0.11 -1.02 5.63 -27.88 -0.16 -1.17 16 4 C 0.51 6.59 7.74 -10.98 -0.09 6.51 16 5 O -0.54 -8.71 15.16 5.56 0.08 -8.63 16 6 N -0.72 -9.21 5.55 -61.47 -0.34 -9.55 16 7 C 0.17 2.46 5.80 -5.19 -0.03 2.43 16 8 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 9 C -0.20 -3.16 9.70 -39.54 -0.38 -3.55 16 10 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 11 C -0.23 -4.69 9.16 -39.40 -0.36 -5.05 16 12 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 13 O -0.18 -4.90 9.76 0.04 0.00 -4.90 16 14 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 15 H 0.09 2.32 5.21 -52.48 -0.27 2.05 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 18 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 23 C -0.18 -1.52 9.89 -26.74 -0.26 -1.79 16 24 C -0.15 -1.58 8.92 -26.73 -0.24 -1.82 16 25 H 0.06 0.70 8.03 -51.93 -0.42 0.28 16 26 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 29 H 0.10 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.40 4.51 8.46 -40.82 -0.35 4.17 16 31 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.66 5.65 -52.49 -0.30 2.36 16 36 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -31.04 350.58 -7.98 -39.02 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.94 Total: 7.77 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.80 Total: -20.00 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.42 Total: -33.62 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.04 -7.98 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320877741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.245 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds