Wall clock time and date at job start Tue Mar 31 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 115.55099 * 2 1 4 4 C 1.50704 * 109.47151 * 279.85857 * 3 2 1 5 5 O 1.21277 * 119.99765 * 354.88518 * 4 3 2 6 6 N 1.34774 * 119.99695 * 174.87977 * 4 3 2 7 7 C 1.46502 * 119.99690 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47002 * 180.02562 * 7 6 4 9 9 C 1.38325 * 119.96534 * 270.02036 * 8 7 6 10 10 C 1.38277 * 120.14052 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06982 * 359.76698 * 10 9 8 12 12 C 1.38856 * 119.92802 * 0.51379 * 11 10 9 13 13 O 1.35756 * 120.07119 * 179.74175 * 12 11 10 14 14 C 1.34827 * 116.99965 * 354.17921 * 13 12 11 15 15 H 1.08003 * 119.99547 * 3.43639 * 14 13 12 16 16 C 1.38656 * 120.00335 * 183.43637 * 14 13 12 17 17 N 1.31556 * 119.99382 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47510 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47020 * 120.00239 * 18 16 14 21 21 H 1.48501 * 109.47296 * 240.00096 * 18 16 14 22 22 C 1.38079 * 119.96899 * 90.00216 * 8 7 6 23 23 C 1.52995 * 117.51718 * 145.70678 * 2 1 3 24 24 C 1.52996 * 60.00269 * 107.47454 * 23 2 1 25 25 H 1.09001 * 109.46851 * 58.57061 * 1 2 3 26 26 H 1.08993 * 109.47238 * 178.57392 * 1 2 3 27 27 H 1.09000 * 109.46622 * 298.57769 * 1 2 3 28 28 H 1.08997 * 109.46705 * 159.86157 * 3 2 1 29 29 H 1.08997 * 109.46817 * 39.85567 * 3 2 1 30 30 H 0.96993 * 120.00098 * 0.02562 * 6 4 3 31 31 H 1.09005 * 109.46995 * 60.00572 * 7 6 4 32 32 H 1.08996 * 109.47636 * 300.00235 * 7 6 4 33 33 H 1.08007 * 119.93190 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.96824 * 180.02562 * 10 9 8 35 35 H 1.07994 * 120.03937 * 180.27283 * 11 10 9 36 36 H 0.97008 * 119.99774 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.03045 * 0.04642 * 22 8 7 38 38 H 1.09003 * 117.49814 * 214.96986 * 23 2 1 39 39 H 1.09004 * 117.50140 * 359.97438 * 23 2 1 40 40 H 1.09000 * 117.50354 * 252.50520 * 24 23 2 41 41 H 1.09007 * 117.49835 * 107.48643 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.1872 1.9385 -1.3999 5 8 1.7900 1.2592 -2.3227 6 7 2.6259 3.1926 -1.6261 7 6 2.6237 3.7350 -2.9870 8 6 3.1589 5.1436 -2.9672 9 6 2.2945 6.2086 -2.7888 10 6 2.7817 7.5026 -2.7695 11 6 4.1344 7.7351 -2.9236 12 6 5.0040 6.6685 -3.1087 13 8 6.3334 6.8941 -3.2657 14 6 6.7300 8.1798 -3.3530 15 1 6.0088 8.9760 -3.2418 16 6 8.0636 8.4797 -3.5854 17 7 8.9419 7.5097 -3.7213 18 14 8.6129 10.2609 -3.7070 19 1 7.4413 11.1541 -3.5202 20 1 9.6212 10.5410 -2.6533 21 1 9.2130 10.5038 -5.0434 22 6 4.5116 5.3698 -3.1268 23 6 2.2369 -1.1210 0.7645 24 6 2.2364 -1.1208 -0.7655 25 1 -0.3633 0.5359 -0.8769 26 1 -0.3633 -1.0273 -0.0256 27 1 -0.3632 0.4916 0.9025 28 1 3.2171 1.2919 0.3538 29 1 1.6349 2.0484 0.6586 30 1 2.9438 3.7357 -0.8881 31 1 1.6051 3.7384 -3.3752 32 1 3.2539 3.1163 -3.6259 33 1 1.2367 6.0292 -2.6643 34 1 2.1043 8.3320 -2.6296 35 1 4.5149 8.7456 -2.9040 36 1 9.8749 7.7195 -3.8842 37 1 5.1859 4.5379 -3.2665 38 1 3.1721 -0.8751 1.2676 39 1 1.6120 -1.8586 1.2681 40 1 1.6112 -1.8583 -1.2687 41 1 3.1713 -0.8747 -1.2691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320877741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:10 Heat of formation + Delta-G solvation = -44.715953 kcal Electronic energy + Delta-G solvation = -21753.735571 eV Core-core repulsion = 18405.952059 eV Total energy + Delta-G solvation = -3347.783511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12785 -40.64932 -38.78252 -38.16535 -35.67014 -34.29263 -32.46828 -30.97484 -30.36885 -29.03858 -27.49771 -26.49557 -23.29624 -23.25505 -22.51486 -21.78908 -20.07876 -19.49513 -18.85704 -17.80181 -17.05336 -16.82182 -16.67589 -16.24956 -16.08634 -15.88399 -15.49867 -15.21075 -14.91045 -14.67176 -14.33951 -13.92789 -13.79844 -13.73266 -13.45770 -13.13988 -13.04343 -12.83380 -12.57471 -12.37315 -12.31801 -12.28500 -12.09765 -12.08630 -11.26426 -11.21619 -10.87126 -10.80830 -10.49124 -10.06798 -9.75018 -9.04296 -8.47902 -6.16253 0.38186 0.69581 1.35620 1.43442 1.53692 1.71930 2.16724 2.25132 2.82250 3.00501 3.17261 3.39413 3.72048 3.80321 3.89075 3.96970 4.08263 4.11591 4.26659 4.30131 4.41126 4.52276 4.62902 4.68686 4.70172 4.73274 4.83429 4.97930 5.01175 5.03947 5.09237 5.11305 5.17571 5.24788 5.29898 5.40148 5.42914 5.61712 5.69819 5.71169 6.00995 6.15868 6.60650 6.97090 7.30501 7.77230 8.75514 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.002760 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.872460 B =10141.648988 C =10754.674497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.102 4.102 4 C 0.509 3.491 5 O -0.573 6.573 6 N -0.719 5.719 7 C 0.175 3.825 8 C -0.058 4.058 9 C -0.169 4.169 10 C -0.069 4.069 11 C -0.235 4.235 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.412 4.412 15 H 0.104 0.896 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.019 2.981 19 H -0.250 1.250 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.183 4.183 23 C -0.158 4.158 24 C -0.174 4.174 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.412 0.588 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.272 0.728 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 -8.610 9.917 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.141 4.141 4 C 0.297 3.703 5 O -0.452 6.452 6 N -0.372 5.372 7 C 0.051 3.949 8 C -0.058 4.058 9 C -0.188 4.188 10 C -0.087 4.087 11 C -0.255 4.255 12 C 0.063 3.937 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.121 0.879 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.173 1.173 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.202 4.202 23 C -0.195 4.195 24 C -0.211 4.211 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.140 0.860 30 H 0.248 0.752 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.003 -9.283 9.198 20.660 hybrid contribution 1.106 0.950 -0.238 1.477 sum -14.896 -8.333 8.960 19.278 Atomic orbital electron populations 1.21264 0.91468 1.02148 1.01739 1.21179 0.95314 0.89716 1.06117 1.21284 1.03980 0.96166 0.92685 1.21232 0.76046 0.80724 0.92302 1.90680 1.48271 1.59405 1.46860 1.46102 1.65772 1.15323 1.09966 1.19976 1.01141 0.89257 0.84504 1.19464 0.91404 0.95256 0.99722 1.20991 1.00071 0.91369 1.06334 1.21165 0.93457 0.97991 0.96046 1.21375 0.95016 0.98743 1.10326 1.19846 0.84443 0.94967 0.94467 1.83945 1.19098 1.29796 1.81109 1.21869 0.94664 0.81020 1.51220 0.87877 1.26587 0.94532 1.05160 0.95838 1.70195 1.03403 1.34671 1.47696 0.84525 0.78990 0.74206 0.78470 1.17275 1.19378 1.19571 1.20211 0.95838 0.93668 1.10523 1.23231 1.02455 1.00167 0.93609 1.22831 1.01939 1.01546 0.94822 0.93740 0.92057 0.90737 0.87341 0.85999 0.75248 0.89780 0.92368 0.83430 0.83302 0.86159 0.91878 0.87614 0.87842 0.87426 0.89353 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.70 71.98 0.70 -1.09 16 2 C -0.12 -2.17 1.63 -52.18 -0.08 -2.26 16 3 C -0.10 -1.69 5.63 29.85 0.17 -1.52 16 4 C 0.51 12.31 7.74 87.66 0.68 12.99 16 5 O -0.57 -18.22 15.16 -3.02 -0.05 -18.27 16 6 N -0.72 -16.77 5.55 -466.79 -2.59 -19.36 16 7 C 0.17 4.77 5.80 85.63 0.50 5.26 16 8 C -0.06 -1.82 5.25 -19.88 -0.10 -1.93 16 9 C -0.17 -4.73 9.70 22.30 0.22 -4.52 16 10 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 11 C -0.24 -9.62 9.16 22.39 0.21 -9.41 16 12 C 0.11 5.41 6.65 22.58 0.15 5.56 16 13 O -0.23 -13.72 9.76 -22.78 -0.22 -13.94 16 14 C -0.41 -23.45 9.49 67.92 0.64 -22.81 16 15 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 16 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 17 N -0.92 -56.11 13.67 21.61 0.30 -55.81 16 18 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 19 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 C -0.18 -7.46 9.65 22.39 0.22 -7.24 16 23 C -0.16 -2.29 9.89 30.59 0.30 -1.99 16 24 C -0.17 -3.53 8.92 30.59 0.27 -3.26 16 25 H 0.04 0.90 8.03 -2.39 -0.02 0.88 16 26 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.11 1.54 7.95 -2.39 -0.02 1.52 16 29 H 0.12 1.41 8.13 -2.39 -0.02 1.39 16 30 H 0.41 8.17 8.46 -92.71 -0.78 7.38 16 31 H 0.08 2.14 8.09 -2.38 -0.02 2.12 16 32 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 33 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.12 5.02 5.65 -2.91 -0.02 5.00 16 36 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 37 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.10 1.30 8.08 -2.39 -0.02 1.28 16 39 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -72.66 350.58 4.26 -68.39 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.25 Total: 29.82 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 4.55 Total: -34.97 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.29 Total: -75.17 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.27 Total: -32.21 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.66 4.26 -68.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320877741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.677 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds